Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2868
Gene name
LocationContig_1708:1945..2670
Strand-
Gene length (bp)725
Transcript length (bp)591
Coding sequence length (bp)591
Protein length (aa) 197

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04133 Vps55 Vacuolar protein sorting 55 2.3E-44 76 193

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UUH1|VPS55_SCHPO Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps55 PE=3 SV=2 73 196 4.0E-28
sp|P47111|VPS55_YEAST Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS55 PE=1 SV=1 73 193 9.0E-26
sp|Q54VP1|VPS55_DICDI Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoideum GN=vps55 PE=3 SV=1 76 195 7.0E-22
sp|O89013|OBRG_MOUSE Leptin receptor gene-related protein OS=Mus musculus GN=Leprot PE=1 SV=1 71 196 2.0E-15
sp|Q9JLS8|OBRG_RAT Leptin receptor gene-related protein OS=Rattus norvegicus GN=Leprot PE=1 SV=1 71 196 1.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|Q9UUH1|VPS55_SCHPO Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps55 PE=3 SV=2 73 196 4.0E-28
sp|P47111|VPS55_YEAST Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS55 PE=1 SV=1 73 193 9.0E-26
sp|Q54VP1|VPS55_DICDI Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoideum GN=vps55 PE=3 SV=1 76 195 7.0E-22
sp|O89013|OBRG_MOUSE Leptin receptor gene-related protein OS=Mus musculus GN=Leprot PE=1 SV=1 71 196 2.0E-15
sp|Q9JLS8|OBRG_RAT Leptin receptor gene-related protein OS=Rattus norvegicus GN=Leprot PE=1 SV=1 71 196 1.0E-13
sp|Q32PD8|LERL1_BOVIN Leptin receptor overlapping transcript-like 1 OS=Bos taurus GN=LEPROTL1 PE=2 SV=1 71 196 2.0E-13
sp|Q561T9|OBRG_DANRE Leptin receptor gene-related protein OS=Danio rerio GN=leprot PE=2 SV=1 71 196 3.0E-13
sp|Q3SYT0|OBRG_BOVIN Leptin receptor gene-related protein OS=Bos taurus GN=LEPROT PE=2 SV=1 71 196 3.0E-13
sp|Q5RDE9|LERL1_PONAB Leptin receptor overlapping transcript-like 1 OS=Pongo abelii GN=LEPROTL1 PE=2 SV=1 71 196 4.0E-13
sp|O95214|LERL1_HUMAN Leptin receptor overlapping transcript-like 1 OS=Homo sapiens GN=LEPROTL1 PE=2 SV=2 71 196 4.0E-13
sp|O15243|OBRG_HUMAN Leptin receptor gene-related protein OS=Homo sapiens GN=LEPROT PE=2 SV=1 71 196 6.0E-13
sp|Q9CQ74|LERL1_MOUSE Leptin receptor overlapping transcript-like 1 OS=Mus musculus GN=Leprotl1 PE=2 SV=1 71 196 8.0E-13
sp|B9TRX0|OBRG_PIG Leptin receptor gene-related protein OS=Sus scrofa GN=LEPROT PE=2 SV=1 71 196 9.0E-13
sp|Q6PDU4|LERL1_RAT Leptin receptor overlapping transcript-like 1 OS=Rattus norvegicus GN=Leprotl1 PE=1 SV=1 71 196 1.0E-12
sp|Q18319|VPS55_CAEEL Vacuolar protein sorting-associated protein 55 homolog OS=Caenorhabditis elegans GN=C30B5.2 PE=3 SV=3 71 195 8.0E-11
sp|Q5PSV5|OBRG_MELGA Leptin receptor gene-related protein OS=Meleagris gallopavo GN=LEPROT PE=2 SV=1 71 196 6.0E-10
sp|Q5ZJD9|OBRG_CHICK Leptin receptor gene-related protein OS=Gallus gallus GN=LEPROT PE=2 SV=1 71 196 6.0E-10
sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1 79 169 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

Domain # Start End Length
1 75 97 22
2 99 119 20
3 139 161 22
4 168 190 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2868
LLSSQGPRSHPSCPASCCRQFDNDDDDDDDDDDDSSLFAPASISSILSEGPKRPALDLRAIPATASTMSGAGLKT
IIALSFVLAVGFLLVILSCALFKVYYPLLVVATFVIAPLPNWICSRCANPDDFVESSGAAVLDLGRFFTGFFVVM
GIALPIVLAHSDLIRVEAMIMSIIGGLLIYGTIISFSMFFHEEQEF*
Coding >Hirsu2|2868
CTGCTGTCATCGCAGGGCCCTCGGTCGCATCCATCGTGTCCAGCCAGCTGCTGCCGCCAGTTCGACAACGACGAC
GACGACGACGACGACGACGACGACGACAGTTCGCTCTTCGCGCCAGCATCGATCTCCTCGATCCTCTCCGAAGGC
CCGAAAAGGCCCGCTCTTGACCTGCGCGCCATCCCGGCCACCGCCTCCACCATGTCCGGGGCCGGCCTCAAGACC
ATCATCGCCCTCTCCTTCGTCCTCGCCGTCGGCTTCCTGCTCGTCATCCTGTCGTGCGCCCTGTTCAAGGTCTAC
TACCCGCTGCTCGTCGTCGCCACTTTCGTCATCGCCCCGCTGCCCAACTGGATCTGCAGCCGCTGCGCCAACCCG
GATGACTTCGTCGAGAGCTCCGGCGCCGCCGTCCTCGACCTCGGCCGCTTCTTCACCGGCTTCTTCGTCGTCATG
GGCATCGCCCTCCCCATCGTGCTCGCGCATTCCGACCTCATACGAGTCGAGGCCATGATCATGTCCATAATCGGC
GGCCTCCTGATCTACGGGACCATCATAAGCTTCAGCATGTTCTTCCACGAGGAACAGGAGTTTTGA
Transcript >Hirsu2|2868
CTGCTGTCATCGCAGGGCCCTCGGTCGCATCCATCGTGTCCAGCCAGCTGCTGCCGCCAGTTCGACAACGACGAC
GACGACGACGACGACGACGACGACGACAGTTCGCTCTTCGCGCCAGCATCGATCTCCTCGATCCTCTCCGAAGGC
CCGAAAAGGCCCGCTCTTGACCTGCGCGCCATCCCGGCCACCGCCTCCACCATGTCCGGGGCCGGCCTCAAGACC
ATCATCGCCCTCTCCTTCGTCCTCGCCGTCGGCTTCCTGCTCGTCATCCTGTCGTGCGCCCTGTTCAAGGTCTAC
TACCCGCTGCTCGTCGTCGCCACTTTCGTCATCGCCCCGCTGCCCAACTGGATCTGCAGCCGCTGCGCCAACCCG
GATGACTTCGTCGAGAGCTCCGGCGCCGCCGTCCTCGACCTCGGCCGCTTCTTCACCGGCTTCTTCGTCGTCATG
GGCATCGCCCTCCCCATCGTGCTCGCGCATTCCGACCTCATACGAGTCGAGGCCATGATCATGTCCATAATCGGC
GGCCTCCTGATCTACGGGACCATCATAAGCTTCAGCATGTTCTTCCACGAGGAACAGGAGTTTTGA
Gene >Hirsu2|2868
CTGCTGTCATCGCAGGGCCCTCGGTCGCATCCATCGTGTCCAGCCAGCTGCTGCCGCCAGTTCGACAACGACGAC
GACGACGACGACGACGACGACGACGACAGTTCGCTCTTCGCGCCAGCATCGATCTCCTCGATCCTCTCCGAAGGC
CCGAAAAGGCCCGCTCTTGACCTGCGCGCCATCCCGGCCACCGCCTCCACCATGTCCGGGGCCGGCCTCAAGACC
ATCATCGCCCTCTCCTTCGTCCTCGCCGTCGGCTTCCTGCTCGTCATCCTGTCGTGCGCCCTGTTCAAGGTCTAC
TACCCGCTGCTCGTCGTCGCCACTTTCGTCATCGCCCCGCTGCCCAACTGGATCTGCAGCCGCTGCGCCAACCCG
GATGACTTCGTCGAGAGCTCCGGCGCCGCCGTCCTCGACCTCGGCCGCTTCTTCACCGGCTTCTTCGTCGTCATG
GGCATCGGTGCGTCTCTGGTCTTCGGCTCAGCCGCCACCCCGTCTTTTTTTTCTTCTCCGGATTCCCGTCCCGCT
GCACATGTGCTTCCTCTCTGTGCGTCTCCATGTCCTTTTTATGCTGACGGCCGATGCCTCGCCAAGCCCTCCCCA
TCGTGCTCGCGCATTCCGACCTCATACGAGTCGAGGCCATGATCATGTCCATAATCGGCGGCCTCCTGATCTACG
GGACCATCATAAGCTTCAGCATGTTCTTCCACGAGGAACAGGAGTTTTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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