Protein ID | Hirsu2|2859 |
Gene name | |
Location | Contig_1704:759..1700 |
Strand | - |
Gene length (bp) | 941 |
Transcript length (bp) | 729 |
Coding sequence length (bp) | 729 |
Protein length (aa) | 243 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09430 | EMC7_beta-sandw | ER membrane protein complex subunit 7, beta-sandwich domain | 5.1E-20 | 27 | 151 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q0IHY5|EMC7_XENTR | ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1 | 43 | 178 | 3.0E-10 |
sp|Q9EP72|EMC7_MOUSE | ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1 | 43 | 178 | 8.0E-10 |
sp|Q9NPA0|EMC7_HUMAN | ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1 | 43 | 178 | 1.0E-09 |
sp|A5PJA8|EMC7_BOVIN | ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1 | 43 | 178 | 2.0E-09 |
sp|Q4R5V2|EMC7_MACFA | ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1 | 43 | 178 | 3.0E-09 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q0IHY5|EMC7_XENTR | ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1 | 43 | 178 | 3.0E-10 |
sp|Q9EP72|EMC7_MOUSE | ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1 | 43 | 178 | 8.0E-10 |
sp|Q9NPA0|EMC7_HUMAN | ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1 | 43 | 178 | 1.0E-09 |
sp|A5PJA8|EMC7_BOVIN | ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1 | 43 | 178 | 2.0E-09 |
sp|Q4R5V2|EMC7_MACFA | ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1 | 43 | 178 | 3.0E-09 |
sp|Q8VY97|Y4213_ARATH | ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1 | 56 | 184 | 6.0E-08 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide | 0.1018 | 0.1143 | 0.2498 | 0.1249 | 0.139 | 0.0057 | 0.6096 | 0.0526 | 0.1224 | 0.0289 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 147 | 166 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 2233 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2859 MRPSAALLLAAPAAASTVTLYLPSQPNPFALPARTHATLVSLGARAAAPLSAVNTFVFRNVTPGSYLVDVHCPVE AFRPLRLDVAAAADAPLAAWETFRGNGWDDRGEALPLREGSAGPGFELRPLGRKQYFLERPRFSILSILKNPMIL MGLVSMLLFIGMPYLLDNMDPEMKAEFEAQQRKGPMAAMMGGAGGGQQAANPLGNFDMAAFLAGSKPREDAAAAA DDAAAADGPARNQGVRR* |
Coding | >Hirsu2|2859 ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATTCTCCATCCTCAGCATCCTCAAGAACCCCATGATCCTG ATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACATGGACCCGGAGATGAAGGCC GAGTTCGAGGCCCAGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCC AACCCGCTCGGCAACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCC GACGACGCCGCTGCCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA |
Transcript | >Hirsu2|2859 ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATTCTCCATCCTCAGCATCCTCAAGAACCCCATGATCCTG ATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACATGGACCCGGAGATGAAGGCC GAGTTCGAGGCCCAGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCC AACCCGCTCGGCAACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCC GACGACGCCGCTGCCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA |
Gene | >Hirsu2|2859 ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATGTGAGTTTGGACTTAGTCTCTTCTTTTCTTTCTCTCTC TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTCTGTGTTTGCAGCGCTTCCGATTCACGGCACACCGATT CGTGGCCCGACCTCGTCTCACTCGTCGCTAACGCCACCCAGTCTCCATCCTCAGCATCCTCAAGAACCCCATGAT CCTGATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACAGTACGTTTTCCCCCTC CCCCCTCTGCTCCCGGGCCCCGCCCCCTTTGACGCCCGCCAGTGGACCCGGAGATGAAGGCCGAGTTCGAGGCCC AGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCCAACCCGCTCGGCA ACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCCGACGACGCCGCTG CCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA |