Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|2859
Gene name
Location	Contig_1704:759..1700
Strand	-
Gene length (bp)	941
Transcript length (bp)	729
Coding sequence length (bp)	729
Protein length (aa)	243

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09430	EMC7_beta-sandw	ER membrane protein complex subunit 7, beta-sandwich domain	5.1E-20	27	151

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q0IHY5\|EMC7_XENTR	ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1	43	178	3.0E-10
sp\|Q9EP72\|EMC7_MOUSE	ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1	43	178	8.0E-10
sp\|Q9NPA0\|EMC7_HUMAN	ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1	43	178	1.0E-09
sp\|A5PJA8\|EMC7_BOVIN	ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1	43	178	2.0E-09
sp\|Q4R5V2\|EMC7_MACFA	ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1	43	178	3.0E-09

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q0IHY5\|EMC7_XENTR	ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1	43	178	3.0E-10
sp\|Q9EP72\|EMC7_MOUSE	ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1	43	178	8.0E-10
sp\|Q9NPA0\|EMC7_HUMAN	ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1	43	178	1.0E-09
sp\|A5PJA8\|EMC7_BOVIN	ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1	43	178	2.0E-09
sp\|Q4R5V2\|EMC7_MACFA	ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1	43	178	3.0E-09
sp\|Q8VY97\|Y4213_ARATH	ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1	56	184	6.0E-08

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 16	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	147	166	19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|2859 MRPSAALLLAAPAAASTVTLYLPSQPNPFALPARTHATLVSLGARAAAPLSAVNTFVFRNVTPGSYLVDVHCPVE AFRPLRLDVAAAADAPLAAWETFRGNGWDDRGEALPLREGSAGPGFELRPLGRKQYFLERPRFSILSILKNPMIL MGLVSMLLFIGMPYLLDNMDPEMKAEFEAQQRKGPMAAMMGGAGGGQQAANPLGNFDMAAFLAGSKPREDAAAAA DDAAAADGPARNQGVRR*
Coding	>Hirsu2\|2859 ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATTCTCCATCCTCAGCATCCTCAAGAACCCCATGATCCTG ATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACATGGACCCGGAGATGAAGGCC GAGTTCGAGGCCCAGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCC AACCCGCTCGGCAACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCC GACGACGCCGCTGCCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA
Transcript	>Hirsu2\|2859 ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATTCTCCATCCTCAGCATCCTCAAGAACCCCATGATCCTG ATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACATGGACCCGGAGATGAAGGCC GAGTTCGAGGCCCAGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCC AACCCGCTCGGCAACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCC GACGACGCCGCTGCCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA
Gene	>Hirsu2\|2859 ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATGTGAGTTTGGACTTAGTCTCTTCTTTTCTTTCTCTCTC TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTCTGTGTTTGCAGCGCTTCCGATTCACGGCACACCGATT CGTGGCCCGACCTCGTCTCACTCGTCGCTAACGCCACCCAGTCTCCATCCTCAGCATCCTCAAGAACCCCATGAT CCTGATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACAGTACGTTTTCCCCCTC CCCCCTCTGCTCCCGGGCCCCGCCCCCTTTGACGCCCGCCAGTGGACCCGGAGATGAAGGCCGAGTTCGAGGCCC AGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCCAACCCGCTCGGCA ACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCCGACGACGCCGCTG CCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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