Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2859
Gene name
LocationContig_1704:759..1700
Strand-
Gene length (bp)941
Transcript length (bp)729
Coding sequence length (bp)729
Protein length (aa) 243

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09430 DUF2012 Protein of unknown function (DUF2012) 6.2E-20 27 151

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q0IHY5|EMC7_XENTR ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1 43 178 3.0E-10
sp|Q9EP72|EMC7_MOUSE ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1 43 178 8.0E-10
sp|Q9NPA0|EMC7_HUMAN ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1 43 178 1.0E-09
sp|A5PJA8|EMC7_BOVIN ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1 43 178 2.0E-09
sp|Q4R5V2|EMC7_MACFA ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1 43 178 3.0E-09
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q0IHY5|EMC7_XENTR ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1 43 178 3.0E-10
sp|Q9EP72|EMC7_MOUSE ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1 43 178 8.0E-10
sp|Q9NPA0|EMC7_HUMAN ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1 43 178 1.0E-09
sp|A5PJA8|EMC7_BOVIN ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1 43 178 2.0E-09
sp|Q4R5V2|EMC7_MACFA ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1 43 178 3.0E-09
sp|Q8VY97|Y4213_ARATH ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1 56 184 6.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 147 166 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2859
MRPSAALLLAAPAAASTVTLYLPSQPNPFALPARTHATLVSLGARAAAPLSAVNTFVFRNVTPGSYLVDVHCPVE
AFRPLRLDVAAAADAPLAAWETFRGNGWDDRGEALPLREGSAGPGFELRPLGRKQYFLERPRFSILSILKNPMIL
MGLVSMLLFIGMPYLLDNMDPEMKAEFEAQQRKGPMAAMMGGAGGGQQAANPLGNFDMAAFLAGSKPREDAAAAA
DDAAAADGPARNQGVRR*
Coding >Hirsu2|2859
ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG
CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG
TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG
GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC
AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG
CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATTCTCCATCCTCAGCATCCTCAAGAACCCCATGATCCTG
ATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACATGGACCCGGAGATGAAGGCC
GAGTTCGAGGCCCAGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCC
AACCCGCTCGGCAACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCC
GACGACGCCGCTGCCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA
Transcript >Hirsu2|2859
ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG
CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG
TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG
GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC
AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG
CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATTCTCCATCCTCAGCATCCTCAAGAACCCCATGATCCTG
ATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACATGGACCCGGAGATGAAGGCC
GAGTTCGAGGCCCAGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCC
AACCCGCTCGGCAACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCC
GACGACGCCGCTGCCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA
Gene >Hirsu2|2859
ATGCGCCCTTCCGCCGCGCTGCTGCTCGCCGCCCCGGCCGCCGCCTCGACGGTGACGCTCTACCTGCCCTCGCAG
CCGAACCCGTTCGCGCTGCCGGCGCGCACGCACGCGACGCTGGTCTCGCTCGGCGCCCGCGCCGCCGCCCCGCTG
TCGGCCGTCAACACCTTCGTCTTCCGCAACGTCACGCCCGGCTCGTACCTCGTCGACGTCCACTGCCCCGTCGAG
GCCTTCCGCCCGCTGCGCCTCGACGTTGCCGCTGCCGCCGACGCGCCCCTCGCCGCTTGGGAGACGTTCCGCGGC
AATGGCTGGGATGATAGGGGCGAGGCGCTGCCGCTGAGGGAGGGTAGCGCGGGGCCGGGCTTTGAGCTGCGGCCG
CTGGGGCGGAAGCAGTACTTTCTCGAGAGGCCGCGATGTGAGTTTGGACTTAGTCTCTTCTTTTCTTTCTCTCTC
TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTCTGTGTTTGCAGCGCTTCCGATTCACGGCACACCGATT
CGTGGCCCGACCTCGTCTCACTCGTCGCTAACGCCACCCAGTCTCCATCCTCAGCATCCTCAAGAACCCCATGAT
CCTGATGGGCCTCGTCAGCATGCTCCTCTTCATCGGCATGCCCTACCTCCTCGACAACAGTACGTTTTCCCCCTC
CCCCCTCTGCTCCCGGGCCCCGCCCCCTTTGACGCCCGCCAGTGGACCCGGAGATGAAGGCCGAGTTCGAGGCCC
AGCAGCGCAAGGGCCCCATGGCCGCCATGATGGGCGGCGCCGGCGGCGGCCAGCAGGCCGCCAACCCGCTCGGCA
ACTTCGACATGGCCGCCTTCCTGGCCGGCTCCAAGCCGAGGGAGGACGCTGCTGCTGCTGCCGACGACGCCGCTG
CCGCCGACGGGCCCGCCCGGAACCAGGGCGTCAGGAGGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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