© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2845 |
| Gene name | |
| Location | Contig_170:29099..31267 |
| Strand | + |
| Gene length (bp) | 2168 |
| Transcript length (bp) | 2046 |
| Coding sequence length (bp) | 2046 |
| Protein length (aa) | 682 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05602 | CLPTM1 | Cleft lip and palate transmembrane protein 1 (CLPTM1) | 1.5E-149 | 34 | 511 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O96005|CLPT1_HUMAN | Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1 | 153 | 622 | 2.0E-107 |
| sp|Q2NL17|CLPT1_BOVIN | Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1 | 153 | 617 | 9.0E-107 |
| sp|Q8VBZ3|CLPT1_MOUSE | Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1 | 153 | 617 | 2.0E-103 |
| sp|Q6DEL2|CLPT1_DANRE | Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1 | 156 | 638 | 7.0E-100 |
| sp|Q54RJ1|CNRB_DICDI | CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1 | 94 | 608 | 2.0E-93 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O96005|CLPT1_HUMAN | Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1 | 153 | 622 | 2.0E-107 |
| sp|Q2NL17|CLPT1_BOVIN | Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1 | 153 | 617 | 9.0E-107 |
| sp|Q8VBZ3|CLPT1_MOUSE | Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1 | 153 | 617 | 2.0E-103 |
| sp|Q6DEL2|CLPT1_DANRE | Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1 | 156 | 638 | 7.0E-100 |
| sp|Q54RJ1|CNRB_DICDI | CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1 | 94 | 608 | 2.0E-93 |
| sp|Q5R7B1|CLP1L_PONAB | Cleft lip and palate transmembrane protein 1-like protein OS=Pongo abelii GN=CLPTM1L PE=2 SV=1 | 129 | 628 | 9.0E-85 |
| sp|Q96KA5|CLP1L_HUMAN | Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1 | 129 | 628 | 4.0E-84 |
| sp|Q5ZKJ0|CLP1L_CHICK | Cleft lip and palate transmembrane protein 1-like protein OS=Gallus gallus GN=CLPTM1L PE=2 SV=1 | 90 | 615 | 2.0E-80 |
| sp|Q8BXA5|CLP1L_MOUSE | Cleft lip and palate transmembrane protein 1-like protein OS=Mus musculus GN=Clptm1l PE=1 SV=1 | 129 | 615 | 2.0E-80 |
| sp|Q6DHU1|CLP1L_DANRE | Cleft lip and palate transmembrane protein 1-like protein OS=Danio rerio GN=clptm1l PE=2 SV=1 | 111 | 629 | 9.0E-80 |
| sp|A2VE61|CLP1L_BOVIN | Cleft lip and palate transmembrane protein 1-like protein OS=Bos taurus GN=CLPTM1L PE=2 SV=1 | 129 | 615 | 1.0E-77 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 364 | 386 | 22 |
| 2 | 399 | 421 | 22 |
| 3 | 431 | 450 | 19 |
| 4 | 488 | 510 | 22 |
| 5 | 520 | 542 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2845 MPSSSAGPAAGQPQQQEQRGGGFNLNRLLLGGAVYFGLNYLMSYAMQKNQRGVAVTNPETGQVVTVAGNTDGIPP YELRPRTLDEGAQYRPVPAKIAPIWPQDSRLDIVVTLSPSFSPAPLSQTPAEYVVLREHGFHMDNRSDARSVDTT FAVPPAVQRNGTLWGHFYVGLAGSVLDPRQPGFDPGAAYHFAHPLTQYLAKKKVAKTRNLLEGRADAAAADAADD QRGPVIASHYHPNASFAFVPAMGVRDFSQLHPAIKQFLRLEATGARDGSGQNGWYYPLLFVNNFWQLTSHMTVLN ETVKELPLHIELKNMAFWQFQLLASIEMNSKENARQAAHGASLPGGGDGTEIEMVKEIFIDTNPILLAITAVVTV AHLILETLAFGSDIAHYRKKKDNVGISVRSILANVVMQAIIFLYLLDNSQNTSWMILGTQVVGIVIELWKITTVV DVRVRPAPAGSLLPWRLAMEDKHTLTETEEKTKEYDEIAFRYMYMAAVPLLVAYGAYSLVYESHKSWYSFVITTL VGSVYTYGFLMMVPSLYINYRLKSVAHMPAKAMMYKFLNTFIDDLFAFTIKMPILHRLATFRDDVIFFVYLYQKW AYRTDYTRVNEFGQGGDGDEAAKAEATEEKKEEEEEEEAAEEEGGAGNKSKSKSKSKSKSKTGPAGEATGRDARQ AATRRR* |
| Coding | >Hirsu2|2845 ATGCCCTCGTCCTCAGCCGGGCCGGCGGCGGGCCAGCCGCAGCAGCAGGAACAACGAGGAGGCGGCTTCAACCTC AACCGGCTGCTGCTCGGCGGCGCCGTCTACTTCGGCCTCAACTACCTCATGTCGTACGCGATGCAGAAGAACCAG CGGGGCGTGGCCGTGACCAACCCCGAGACGGGCCAGGTGGTGACGGTGGCCGGCAACACGGACGGCATCCCGCCC TACGAGCTGCGGCCCCGGACGCTCGACGAGGGCGCCCAGTACCGGCCGGTGCCGGCCAAGATCGCGCCCATCTGG CCGCAGGACAGCCGGCTCGACATCGTCGTCACCCTGTCGCCGTCGTTCAGCCCGGCGCCGCTGTCGCAGACGCCG GCCGAGTACGTCGTCCTGCGCGAGCACGGCTTCCACATGGACAACCGGTCGGACGCGCGCTCCGTCGACACCACC TTCGCCGTGCCGCCGGCCGTCCAGCGCAACGGCACGCTCTGGGGCCACTTCTACGTCGGCCTCGCCGGCAGCGTC CTCGACCCGCGCCAGCCGGGCTTCGACCCGGGCGCCGCCTACCACTTCGCCCACCCGCTGACGCAGTACCTGGCC AAGAAGAAGGTGGCCAAGACGCGGAACCTGCTCGAGGGCCGCGCCGACGCGGCCGCGGCCGACGCGGCCGACGAC CAGCGCGGGCCCGTCATCGCCAGCCACTACCACCCCAACGCCAGCTTCGCCTTCGTGCCGGCCATGGGCGTCCGG GACTTTTCGCAGCTGCACCCGGCCATCAAGCAGTTTCTGCGGCTCGAGGCAACGGGGGCGCGCGACGGCAGCGGC CAAAACGGCTGGTACTACCCGCTCTTGTTCGTCAACAACTTCTGGCAGCTGACGAGCCACATGACGGTGCTCAAC GAGACGGTCAAGGAGCTGCCGCTGCACATCGAGCTCAAGAACATGGCGTTTTGGCAGTTCCAGCTGCTGGCGTCG ATCGAGATGAACTCCAAGGAGAACGCGCGGCAGGCGGCGCACGGGGCGTCGCTGCCCGGTGGCGGCGACGGAACC GAGATCGAGATGGTCAAGGAGATCTTTATCGACACCAACCCGATCCTGCTGGCCATCACGGCCGTGGTGACGGTG GCGCACCTGATCCTCGAGACGTTGGCCTTTGGGTCGGACATTGCGCACTACCGCAAGAAGAAGGACAACGTCGGC ATCTCGGTGCGGTCGATCCTGGCCAACGTGGTGATGCAGGCCATCATCTTCCTGTACCTGCTCGACAACTCGCAG AACACGAGCTGGATGATCCTGGGGACGCAGGTGGTGGGCATCGTCATCGAGTTGTGGAAAATAACGACGGTCGTC GACGTGCGGGTGCGGCCGGCGCCGGCCGGATCGCTGCTGCCGTGGCGGCTGGCGATGGAGGACAAGCACACGCTG ACGGAGACGGAGGAGAAGACGAAGGAGTACGACGAGATCGCGTTCCGGTACATGTACATGGCGGCGGTGCCGCTG CTGGTGGCGTACGGGGCCTACTCGCTGGTGTACGAGTCGCACAAGTCGTGGTACTCGTTCGTCATCACGACGCTG GTCGGGTCCGTCTACACGTACGGCTTCCTGATGATGGTGCCGTCGCTCTACATCAACTACCGGCTCAAGAGCGTG GCGCACATGCCGGCCAAGGCGATGATGTACAAGTTCCTCAACACCTTCATCGACGACCTGTTCGCCTTCACCATC AAGATGCCGATCCTGCACCGGCTGGCGACGTTCCGCGACGACGTCATCTTCTTCGTCTACCTGTACCAGAAGTGG GCGTACCGGACCGACTACACGCGCGTCAACGAGTTTGGCCAGGGCGGCGACGGCGACGAGGCGGCCAAGGCCGAG GCCACGGAGGAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGGCGGCGCCGGCAACAAGAGC AAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGACAGGGCCGGCGGGCGAGGCGACGGGACGCGATGCCCGACAG GCGGCGACCCGGCGCCGGTGA |
| Transcript | >Hirsu2|2845 ATGCCCTCGTCCTCAGCCGGGCCGGCGGCGGGCCAGCCGCAGCAGCAGGAACAACGAGGAGGCGGCTTCAACCTC AACCGGCTGCTGCTCGGCGGCGCCGTCTACTTCGGCCTCAACTACCTCATGTCGTACGCGATGCAGAAGAACCAG CGGGGCGTGGCCGTGACCAACCCCGAGACGGGCCAGGTGGTGACGGTGGCCGGCAACACGGACGGCATCCCGCCC TACGAGCTGCGGCCCCGGACGCTCGACGAGGGCGCCCAGTACCGGCCGGTGCCGGCCAAGATCGCGCCCATCTGG CCGCAGGACAGCCGGCTCGACATCGTCGTCACCCTGTCGCCGTCGTTCAGCCCGGCGCCGCTGTCGCAGACGCCG GCCGAGTACGTCGTCCTGCGCGAGCACGGCTTCCACATGGACAACCGGTCGGACGCGCGCTCCGTCGACACCACC TTCGCCGTGCCGCCGGCCGTCCAGCGCAACGGCACGCTCTGGGGCCACTTCTACGTCGGCCTCGCCGGCAGCGTC CTCGACCCGCGCCAGCCGGGCTTCGACCCGGGCGCCGCCTACCACTTCGCCCACCCGCTGACGCAGTACCTGGCC AAGAAGAAGGTGGCCAAGACGCGGAACCTGCTCGAGGGCCGCGCCGACGCGGCCGCGGCCGACGCGGCCGACGAC CAGCGCGGGCCCGTCATCGCCAGCCACTACCACCCCAACGCCAGCTTCGCCTTCGTGCCGGCCATGGGCGTCCGG GACTTTTCGCAGCTGCACCCGGCCATCAAGCAGTTTCTGCGGCTCGAGGCAACGGGGGCGCGCGACGGCAGCGGC CAAAACGGCTGGTACTACCCGCTCTTGTTCGTCAACAACTTCTGGCAGCTGACGAGCCACATGACGGTGCTCAAC GAGACGGTCAAGGAGCTGCCGCTGCACATCGAGCTCAAGAACATGGCGTTTTGGCAGTTCCAGCTGCTGGCGTCG ATCGAGATGAACTCCAAGGAGAACGCGCGGCAGGCGGCGCACGGGGCGTCGCTGCCCGGTGGCGGCGACGGAACC GAGATCGAGATGGTCAAGGAGATCTTTATCGACACCAACCCGATCCTGCTGGCCATCACGGCCGTGGTGACGGTG GCGCACCTGATCCTCGAGACGTTGGCCTTTGGGTCGGACATTGCGCACTACCGCAAGAAGAAGGACAACGTCGGC ATCTCGGTGCGGTCGATCCTGGCCAACGTGGTGATGCAGGCCATCATCTTCCTGTACCTGCTCGACAACTCGCAG AACACGAGCTGGATGATCCTGGGGACGCAGGTGGTGGGCATCGTCATCGAGTTGTGGAAAATAACGACGGTCGTC GACGTGCGGGTGCGGCCGGCGCCGGCCGGATCGCTGCTGCCGTGGCGGCTGGCGATGGAGGACAAGCACACGCTG ACGGAGACGGAGGAGAAGACGAAGGAGTACGACGAGATCGCGTTCCGGTACATGTACATGGCGGCGGTGCCGCTG CTGGTGGCGTACGGGGCCTACTCGCTGGTGTACGAGTCGCACAAGTCGTGGTACTCGTTCGTCATCACGACGCTG GTCGGGTCCGTCTACACGTACGGCTTCCTGATGATGGTGCCGTCGCTCTACATCAACTACCGGCTCAAGAGCGTG GCGCACATGCCGGCCAAGGCGATGATGTACAAGTTCCTCAACACCTTCATCGACGACCTGTTCGCCTTCACCATC AAGATGCCGATCCTGCACCGGCTGGCGACGTTCCGCGACGACGTCATCTTCTTCGTCTACCTGTACCAGAAGTGG GCGTACCGGACCGACTACACGCGCGTCAACGAGTTTGGCCAGGGCGGCGACGGCGACGAGGCGGCCAAGGCCGAG GCCACGGAGGAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGAGGAGGAGGGCGGCGCCGGCAACAAGAGC AAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGACAGGGCCGGCGGGCGAGGCGACGGGACGCGATGCCCGACAG GCGGCGACCCGGCGCCGGTGA |
| Gene | >Hirsu2|2845 ATGCCCTCGTCCTCAGCCGGGCCGGCGGCGGGCCAGCCGCAGCAGCAGGAACAACGAGGAGGCGTAAGTCGGCAC GATGCGGCCGGAGACGGGCAGAGCCGACGCTGACAGCAGACGCAGGGCTTCAACCTCAACCGGCTGCTGCTCGGC GGCGCCGTCTACTTCGGCCTCAACTACCTCATGTCGTACGCGATGCAGAAGAACCAGCGGGGCGTGGCCGTGACC AACCCCGAGACGGGCCAGGTGGTGACGGTGGCCGGCAACACGGACGGCATCCCGCCCTACGAGCTGCGGCCCCGG ACGCTCGACGAGGGCGCCCAGTACCGGCCGGTGCCGGCCAAGATCGCGCCCATCTGGCCGCAGGACAGCCGGCTC GACATCGTCGTCACCCTGTCGCCGTCGTTCAGCCCGGCGCCGCTGTCGCAGACGCCGGCCGAGTACGTCGTCCTG CGCGAGCACGGCTTCCACATGGACAACCGGTCGGACGCGCGCTCCGTCGACACCACCTTCGCCGTGCCGCCGGCC GTCCAGCGCAACGGCACGCTCTGGGGCCACTTCTACGTCGGCCTCGCCGGCAGCGTCCTCGACCCGCGCCAGCCG GGCTTCGACCCGGGCGCCGCCTACCACTTCGCCCACCCGCTGACGCAGTACCTGGCCAAGAAGAAGGTGGCCAAG ACGCGGAACCTGCTCGAGGGCCGCGCCGACGCGGCCGCGGCCGACGCGGCCGACGACCAGCGCGGGCCCGTCATC GCCAGCCACTACCACCCCAACGCCAGCTTCGCCTTCGTGCCGGCCATGGGCGTCCGGGACTTTTCGCAGCTGCAC CCGGCCATCAAGCAGTTTCTGCGGCTCGAGGCAACGGGGGCGCGCGACGGCAGCGGCCAAAACGGCTGGTACTGT CCGTCATCCTCCTCCCTCGGCTGGTCTTGGGCTTATGCTGACCCACGCACGCGCTCCCTCCAGACCCGCTCTTGT TCGTCAACAACTTCTGGCAGCTGACGAGCCACATGACGGTGCTCAACGAGACGGTCAAGGAGCTGCCGCTGCACA TCGAGCTCAAGAACATGGCGTTTTGGCAGTTCCAGCTGCTGGCGTCGATCGAGATGAACTCCAAGGAGAACGCGC GGCAGGCGGCGCACGGGGCGTCGCTGCCCGGTGGCGGCGACGGAACCGAGATCGAGATGGTCAAGGAGATCTTTA TCGACACCAACCCGATCCTGCTGGCCATCACGGCCGTGGTGACGGTGGCGCACCTGATCCTCGAGACGTTGGCCT TTGGGTCGGACATTGCGCACTACCGCAAGAAGAAGGACAACGTCGGCATCTCGGTGCGGTCGATCCTGGCCAACG TGGTGATGCAGGCCATCATCTTCCTGTACCTGCTCGACAACTCGCAGAACACGAGCTGGATGATCCTGGGGACGC AGGTGGTGGGCATCGTCATCGAGTTGTGGAAAATAACGACGGTCGTCGACGTGCGGGTGCGGCCGGCGCCGGCCG GATCGCTGCTGCCGTGGCGGCTGGCGATGGAGGACAAGCACACGCTGACGGAGACGGAGGAGAAGACGAAGGAGT ACGACGAGATCGCGTTCCGGTACATGTACATGGCGGCGGTGCCGCTGCTGGTGGCGTACGGGGCCTACTCGCTGG TGTACGAGTCGCACAAGTCGTGGTACTCGTTCGTCATCACGACGCTGGTCGGGTCCGTCTACACGTACGGCTTCC TGATGATGGTGCCGTCGCTCTACATCAACTACCGGCTCAAGAGCGTGGCGCACATGCCGGCCAAGGCGATGATGT ACAAGTTCCTCAACACCTTCATCGACGACCTGTTCGCCTTCACCATCAAGATGCCGATCCTGCACCGGCTGGCGA CGTTCCGCGACGACGTCATCTTCTTCGTCTACCTGTACCAGAAGTGGGCGTACCGGACCGACTACACGCGCGTCA ACGAGTTTGGCCAGGGCGGCGACGGCGACGAGGCGGCCAAGGCCGAGGCCACGGAGGAGAAGAAGGAGGAGGAGG AGGAGGAGGAGGCGGCGGAGGAGGAGGGCGGCGCCGGCAACAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGA GCAAGACAGGGCCGGCGGGCGAGGCGACGGGACGCGATGCCCGACAGGCGGCGACCCGGCGCCGGTGA |