Protein ID | Hirsu2|284 |
Gene name | |
Location | Contig_1052:7744..8761 |
Strand | + |
Gene length (bp) | 1017 |
Transcript length (bp) | 1017 |
Coding sequence length (bp) | 1017 |
Protein length (aa) | 339 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06687 | SUR7 | SUR7/PalI family | 3.1E-32 | 9 | 256 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005886 | plasma membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0016020 | membrane | No |
GO:0110165 | cellular anatomical entity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide | 0.16 | 0.0958 | 0.4099 | 0.6525 | 0.1457 | 0.0072 | 0.0654 | 0.747 | 0.3666 | 0.0076 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 80 | 102 | 22 |
3 | 164 | 186 | 22 |
4 | 196 | 218 | 22 |
5 | 239 | 261 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2224 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|284 MAVGRFVCVSVPLVLTIAAIISLLVATLSGVTHNSLYVFRVNISGLSVNPSSLGDLRNLVNIPQVKPRADLPAIL GKLPLAGGNITAAAFGVGGVVDVNLWGFCTTDKDGKRECTKSQFDWASRELNTTRLEGLGDAVGVKVNLPNEVQD GLKAFAALAKWTEVAFIVALVALGIELVVGILSTFSRVISCLTWLTAGVTAVLVGVAAGLATAMGSLVVGTVEAT ARAYGVKGDIGGRFLAACWLAFAFATAAAFFWFFTICCCKPGDRRSRGGGVRHRDTPDGEKLMPSRAYAPIGNEN EMSGGGFAHQGPTPSHPPRYPGGTGRADLAYEPYSHRV* |
Coding | >Hirsu2|284 ATGGCCGTCGGTCGCTTCGTCTGCGTCTCGGTCCCGCTCGTCCTGACCATCGCCGCCATCATCAGCCTCCTGGTG GCCACGCTGTCGGGCGTCACCCACAACAGCCTCTACGTCTTCCGCGTCAACATCTCGGGCCTGTCCGTCAACCCC AGCTCGCTAGGCGACCTGCGGAACCTGGTCAACATCCCCCAGGTCAAGCCCCGGGCCGACCTGCCCGCCATCCTC GGCAAGCTGCCCCTGGCCGGCGGCAACATCACGGCGGCCGCCTTTGGCGTCGGCGGCGTCGTCGACGTCAACCTC TGGGGCTTCTGCACCACCGACAAGGATGGCAAGCGGGAGTGCACCAAGTCCCAGTTCGACTGGGCCTCGCGCGAG CTCAACACGACCCGGCTCGAGGGCCTCGGCGATGCCGTCGGCGTCAAGGTCAACCTGCCCAATGAGGTCCAGGAC GGCCTCAAGGCTTTCGCCGCCCTGGCCAAGTGGACCGAGGTGGCCTTCATCGTCGCCCTCGTCGCCCTCGGCATC GAGCTCGTCGTCGGCATCTTGTCGACCTTCTCGCGCGTCATCTCGTGCCTGACGTGGCTGACGGCCGGCGTCACG GCCGTCCTGGTCGGCGTCGCCGCCGGCCTCGCCACCGCCATGGGCAGCCTCGTCGTCGGCACCGTCGAGGCCACC GCCCGCGCCTACGGCGTCAAGGGCGACATCGGCGGCCGCTTCCTGGCCGCCTGCTGGCTCGCCTTCGCCTTCGCC ACCGCCGCCGCCTTCTTCTGGTTCTTCACCATCTGCTGCTGCAAGCCGGGCGACAGGCGCAGCCGCGGCGGCGGT GTGCGTCACCGCGACACCCCCGACGGCGAGAAGCTGATGCCGTCGCGCGCCTACGCGCCCATCGGCAACGAGAAC GAGATGAGCGGCGGAGGCTTCGCCCACCAAGGCCCGACGCCGTCGCACCCGCCGCGCTACCCCGGCGGGACTGGC CGGGCGGACCTGGCCTACGAGCCCTATTCTCACCGCGTGTAG |
Transcript | >Hirsu2|284 ATGGCCGTCGGTCGCTTCGTCTGCGTCTCGGTCCCGCTCGTCCTGACCATCGCCGCCATCATCAGCCTCCTGGTG GCCACGCTGTCGGGCGTCACCCACAACAGCCTCTACGTCTTCCGCGTCAACATCTCGGGCCTGTCCGTCAACCCC AGCTCGCTAGGCGACCTGCGGAACCTGGTCAACATCCCCCAGGTCAAGCCCCGGGCCGACCTGCCCGCCATCCTC GGCAAGCTGCCCCTGGCCGGCGGCAACATCACGGCGGCCGCCTTTGGCGTCGGCGGCGTCGTCGACGTCAACCTC TGGGGCTTCTGCACCACCGACAAGGATGGCAAGCGGGAGTGCACCAAGTCCCAGTTCGACTGGGCCTCGCGCGAG CTCAACACGACCCGGCTCGAGGGCCTCGGCGATGCCGTCGGCGTCAAGGTCAACCTGCCCAATGAGGTCCAGGAC GGCCTCAAGGCTTTCGCCGCCCTGGCCAAGTGGACCGAGGTGGCCTTCATCGTCGCCCTCGTCGCCCTCGGCATC GAGCTCGTCGTCGGCATCTTGTCGACCTTCTCGCGCGTCATCTCGTGCCTGACGTGGCTGACGGCCGGCGTCACG GCCGTCCTGGTCGGCGTCGCCGCCGGCCTCGCCACCGCCATGGGCAGCCTCGTCGTCGGCACCGTCGAGGCCACC GCCCGCGCCTACGGCGTCAAGGGCGACATCGGCGGCCGCTTCCTGGCCGCCTGCTGGCTCGCCTTCGCCTTCGCC ACCGCCGCCGCCTTCTTCTGGTTCTTCACCATCTGCTGCTGCAAGCCGGGCGACAGGCGCAGCCGCGGCGGCGGT GTGCGTCACCGCGACACCCCCGACGGCGAGAAGCTGATGCCGTCGCGCGCCTACGCGCCCATCGGCAACGAGAAC GAGATGAGCGGCGGAGGCTTCGCCCACCAAGGCCCGACGCCGTCGCACCCGCCGCGCTACCCCGGCGGGACTGGC CGGGCGGACCTGGCCTACGAGCCCTATTCTCACCGCGTGTAG |
Gene | >Hirsu2|284 ATGGCCGTCGGTCGCTTCGTCTGCGTCTCGGTCCCGCTCGTCCTGACCATCGCCGCCATCATCAGCCTCCTGGTG GCCACGCTGTCGGGCGTCACCCACAACAGCCTCTACGTCTTCCGCGTCAACATCTCGGGCCTGTCCGTCAACCCC AGCTCGCTAGGCGACCTGCGGAACCTGGTCAACATCCCCCAGGTCAAGCCCCGGGCCGACCTGCCCGCCATCCTC GGCAAGCTGCCCCTGGCCGGCGGCAACATCACGGCGGCCGCCTTTGGCGTCGGCGGCGTCGTCGACGTCAACCTC TGGGGCTTCTGCACCACCGACAAGGATGGCAAGCGGGAGTGCACCAAGTCCCAGTTCGACTGGGCCTCGCGCGAG CTCAACACGACCCGGCTCGAGGGCCTCGGCGATGCCGTCGGCGTCAAGGTCAACCTGCCCAATGAGGTCCAGGAC GGCCTCAAGGCTTTCGCCGCCCTGGCCAAGTGGACCGAGGTGGCCTTCATCGTCGCCCTCGTCGCCCTCGGCATC GAGCTCGTCGTCGGCATCTTGTCGACCTTCTCGCGCGTCATCTCGTGCCTGACGTGGCTGACGGCCGGCGTCACG GCCGTCCTGGTCGGCGTCGCCGCCGGCCTCGCCACCGCCATGGGCAGCCTCGTCGTCGGCACCGTCGAGGCCACC GCCCGCGCCTACGGCGTCAAGGGCGACATCGGCGGCCGCTTCCTGGCCGCCTGCTGGCTCGCCTTCGCCTTCGCC ACCGCCGCCGCCTTCTTCTGGTTCTTCACCATCTGCTGCTGCAAGCCGGGCGACAGGCGCAGCCGCGGCGGCGGT GTGCGTCACCGCGACACCCCCGACGGCGAGAAGCTGATGCCGTCGCGCGCCTACGCGCCCATCGGCAACGAGAAC GAGATGAGCGGCGGAGGCTTCGCCCACCAAGGCCCGACGCCGTCGCACCCGCCGCGCTACCCCGGCGGGACTGGC CGGGCGGACCTGGCCTACGAGCCCTATTCTCACCGCGTGTAG |