© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|284 |
| Gene name | |
| Location | Contig_1052:7744..8761 |
| Strand | + |
| Gene length (bp) | 1017 |
| Transcript length (bp) | 1017 |
| Coding sequence length (bp) | 1017 |
| Protein length (aa) | 339 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 3.1E-32 | 9 | 256 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 80 | 102 | 22 |
| 3 | 164 | 186 | 22 |
| 4 | 196 | 218 | 22 |
| 5 | 239 | 261 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|284 MAVGRFVCVSVPLVLTIAAIISLLVATLSGVTHNSLYVFRVNISGLSVNPSSLGDLRNLVNIPQVKPRADLPAIL GKLPLAGGNITAAAFGVGGVVDVNLWGFCTTDKDGKRECTKSQFDWASRELNTTRLEGLGDAVGVKVNLPNEVQD GLKAFAALAKWTEVAFIVALVALGIELVVGILSTFSRVISCLTWLTAGVTAVLVGVAAGLATAMGSLVVGTVEAT ARAYGVKGDIGGRFLAACWLAFAFATAAAFFWFFTICCCKPGDRRSRGGGVRHRDTPDGEKLMPSRAYAPIGNEN EMSGGGFAHQGPTPSHPPRYPGGTGRADLAYEPYSHRV* |
| Coding | >Hirsu2|284 ATGGCCGTCGGTCGCTTCGTCTGCGTCTCGGTCCCGCTCGTCCTGACCATCGCCGCCATCATCAGCCTCCTGGTG GCCACGCTGTCGGGCGTCACCCACAACAGCCTCTACGTCTTCCGCGTCAACATCTCGGGCCTGTCCGTCAACCCC AGCTCGCTAGGCGACCTGCGGAACCTGGTCAACATCCCCCAGGTCAAGCCCCGGGCCGACCTGCCCGCCATCCTC GGCAAGCTGCCCCTGGCCGGCGGCAACATCACGGCGGCCGCCTTTGGCGTCGGCGGCGTCGTCGACGTCAACCTC TGGGGCTTCTGCACCACCGACAAGGATGGCAAGCGGGAGTGCACCAAGTCCCAGTTCGACTGGGCCTCGCGCGAG CTCAACACGACCCGGCTCGAGGGCCTCGGCGATGCCGTCGGCGTCAAGGTCAACCTGCCCAATGAGGTCCAGGAC GGCCTCAAGGCTTTCGCCGCCCTGGCCAAGTGGACCGAGGTGGCCTTCATCGTCGCCCTCGTCGCCCTCGGCATC GAGCTCGTCGTCGGCATCTTGTCGACCTTCTCGCGCGTCATCTCGTGCCTGACGTGGCTGACGGCCGGCGTCACG GCCGTCCTGGTCGGCGTCGCCGCCGGCCTCGCCACCGCCATGGGCAGCCTCGTCGTCGGCACCGTCGAGGCCACC GCCCGCGCCTACGGCGTCAAGGGCGACATCGGCGGCCGCTTCCTGGCCGCCTGCTGGCTCGCCTTCGCCTTCGCC ACCGCCGCCGCCTTCTTCTGGTTCTTCACCATCTGCTGCTGCAAGCCGGGCGACAGGCGCAGCCGCGGCGGCGGT GTGCGTCACCGCGACACCCCCGACGGCGAGAAGCTGATGCCGTCGCGCGCCTACGCGCCCATCGGCAACGAGAAC GAGATGAGCGGCGGAGGCTTCGCCCACCAAGGCCCGACGCCGTCGCACCCGCCGCGCTACCCCGGCGGGACTGGC CGGGCGGACCTGGCCTACGAGCCCTATTCTCACCGCGTGTAG |
| Transcript | >Hirsu2|284 ATGGCCGTCGGTCGCTTCGTCTGCGTCTCGGTCCCGCTCGTCCTGACCATCGCCGCCATCATCAGCCTCCTGGTG GCCACGCTGTCGGGCGTCACCCACAACAGCCTCTACGTCTTCCGCGTCAACATCTCGGGCCTGTCCGTCAACCCC AGCTCGCTAGGCGACCTGCGGAACCTGGTCAACATCCCCCAGGTCAAGCCCCGGGCCGACCTGCCCGCCATCCTC GGCAAGCTGCCCCTGGCCGGCGGCAACATCACGGCGGCCGCCTTTGGCGTCGGCGGCGTCGTCGACGTCAACCTC TGGGGCTTCTGCACCACCGACAAGGATGGCAAGCGGGAGTGCACCAAGTCCCAGTTCGACTGGGCCTCGCGCGAG CTCAACACGACCCGGCTCGAGGGCCTCGGCGATGCCGTCGGCGTCAAGGTCAACCTGCCCAATGAGGTCCAGGAC GGCCTCAAGGCTTTCGCCGCCCTGGCCAAGTGGACCGAGGTGGCCTTCATCGTCGCCCTCGTCGCCCTCGGCATC GAGCTCGTCGTCGGCATCTTGTCGACCTTCTCGCGCGTCATCTCGTGCCTGACGTGGCTGACGGCCGGCGTCACG GCCGTCCTGGTCGGCGTCGCCGCCGGCCTCGCCACCGCCATGGGCAGCCTCGTCGTCGGCACCGTCGAGGCCACC GCCCGCGCCTACGGCGTCAAGGGCGACATCGGCGGCCGCTTCCTGGCCGCCTGCTGGCTCGCCTTCGCCTTCGCC ACCGCCGCCGCCTTCTTCTGGTTCTTCACCATCTGCTGCTGCAAGCCGGGCGACAGGCGCAGCCGCGGCGGCGGT GTGCGTCACCGCGACACCCCCGACGGCGAGAAGCTGATGCCGTCGCGCGCCTACGCGCCCATCGGCAACGAGAAC GAGATGAGCGGCGGAGGCTTCGCCCACCAAGGCCCGACGCCGTCGCACCCGCCGCGCTACCCCGGCGGGACTGGC CGGGCGGACCTGGCCTACGAGCCCTATTCTCACCGCGTGTAG |
| Gene | >Hirsu2|284 ATGGCCGTCGGTCGCTTCGTCTGCGTCTCGGTCCCGCTCGTCCTGACCATCGCCGCCATCATCAGCCTCCTGGTG GCCACGCTGTCGGGCGTCACCCACAACAGCCTCTACGTCTTCCGCGTCAACATCTCGGGCCTGTCCGTCAACCCC AGCTCGCTAGGCGACCTGCGGAACCTGGTCAACATCCCCCAGGTCAAGCCCCGGGCCGACCTGCCCGCCATCCTC GGCAAGCTGCCCCTGGCCGGCGGCAACATCACGGCGGCCGCCTTTGGCGTCGGCGGCGTCGTCGACGTCAACCTC TGGGGCTTCTGCACCACCGACAAGGATGGCAAGCGGGAGTGCACCAAGTCCCAGTTCGACTGGGCCTCGCGCGAG CTCAACACGACCCGGCTCGAGGGCCTCGGCGATGCCGTCGGCGTCAAGGTCAACCTGCCCAATGAGGTCCAGGAC GGCCTCAAGGCTTTCGCCGCCCTGGCCAAGTGGACCGAGGTGGCCTTCATCGTCGCCCTCGTCGCCCTCGGCATC GAGCTCGTCGTCGGCATCTTGTCGACCTTCTCGCGCGTCATCTCGTGCCTGACGTGGCTGACGGCCGGCGTCACG GCCGTCCTGGTCGGCGTCGCCGCCGGCCTCGCCACCGCCATGGGCAGCCTCGTCGTCGGCACCGTCGAGGCCACC GCCCGCGCCTACGGCGTCAAGGGCGACATCGGCGGCCGCTTCCTGGCCGCCTGCTGGCTCGCCTTCGCCTTCGCC ACCGCCGCCGCCTTCTTCTGGTTCTTCACCATCTGCTGCTGCAAGCCGGGCGACAGGCGCAGCCGCGGCGGCGGT GTGCGTCACCGCGACACCCCCGACGGCGAGAAGCTGATGCCGTCGCGCGCCTACGCGCCCATCGGCAACGAGAAC GAGATGAGCGGCGGAGGCTTCGCCCACCAAGGCCCGACGCCGTCGCACCCGCCGCGCTACCCCGGCGGGACTGGC CGGGCGGACCTGGCCTACGAGCCCTATTCTCACCGCGTGTAG |