© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2821 |
| Gene name | |
| Location | Contig_17:36627..37353 |
| Strand | + |
| Gene length (bp) | 726 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1354 | 0.071 | 0.9364 | 0.0887 | 0.1006 | 0.0396 | 0.0883 | 0.0957 | 0.0922 | 0.0013 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999727 |
| Orthofinder run ID | 4 |
| Orthogroup | 152 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2821 MRLFSIIAAAAMAPAAVSAFNGQSADLGQMKPNPAAYEGLPTTVYAKDYRCVVETDDKKYDCAWSYCTGWTEGAN PGAGFKYYTSTKHHTISQLNAPNRTDLNPPRPGDACYNVYTGVGCAWPSWSQLVCKERTEEYHQKWYYGGAWSDS GKKCRRGRDGKYPSWCEWHVGTDRFCRAGKSGEEIEACLYGRRPPFLEPAWAGSFDGWAEDDMGTVKWCFLDEIK GIYDSERACVEFRTRA* |
| Coding | >Hirsu2|2821 ATGCGCTTATTCAGTATCATCGCTGCTGCCGCTATGGCTCCAGCTGCTGTGTCGGCTTTCAACGGCCAGTCTGCG GACTTGGGGCAGATGAAGCCGAACCCTGCAGCCTATGAAGGTCTCCCTACGACCGTCTACGCGAAAGACTACCGA TGTGTTGTTGAAACAGACGATAAAAAATACGACTGCGCCTGGAGTTACTGCACAGGCTGGACCGAAGGGGCTAAC CCGGGTGCCGGGTTCAAGTACTACACCAGCACCAAGCATCATACCATTTCTCAGCTCAACGCCCCTAACCGAACC GACCTGAATCCTCCTCGCCCCGGAGACGCATGCTACAATGTATATACGGGGGTCGGCTGCGCTTGGCCGAGTTGG AGCCAGCTGGTATGCAAGGAGAGAACCGAGGAGTACCATCAGAAGTGGTACTATGGAGGCGCTTGGAGTGACAGC GGGAAGAAGTGCCGCCGGGGTAGGGACGGAAAGTATCCTTCCTGGTGTGAATGGCATGTTGGAACTGATCGTTTC TGCCGCGCTGGGAAATCAGGCGAGGAGATAGAGGCTTGCTTGTACGGGAGAAGGCCCCCTTTTCTCGAGCCCGCT TGGGCTGGATCATTTGACGGCTGGGCAGAAGATGATATGGGAACGGTGAAGTGGTGTTTCCTGGATGAAATCAAG GGGATCTACGACTCAGAAAGAGCATGTGTCGAATTCCGAACTCGTGCCTAG |
| Transcript | >Hirsu2|2821 ATGCGCTTATTCAGTATCATCGCTGCTGCCGCTATGGCTCCAGCTGCTGTGTCGGCTTTCAACGGCCAGTCTGCG GACTTGGGGCAGATGAAGCCGAACCCTGCAGCCTATGAAGGTCTCCCTACGACCGTCTACGCGAAAGACTACCGA TGTGTTGTTGAAACAGACGATAAAAAATACGACTGCGCCTGGAGTTACTGCACAGGCTGGACCGAAGGGGCTAAC CCGGGTGCCGGGTTCAAGTACTACACCAGCACCAAGCATCATACCATTTCTCAGCTCAACGCCCCTAACCGAACC GACCTGAATCCTCCTCGCCCCGGAGACGCATGCTACAATGTATATACGGGGGTCGGCTGCGCTTGGCCGAGTTGG AGCCAGCTGGTATGCAAGGAGAGAACCGAGGAGTACCATCAGAAGTGGTACTATGGAGGCGCTTGGAGTGACAGC GGGAAGAAGTGCCGCCGGGGTAGGGACGGAAAGTATCCTTCCTGGTGTGAATGGCATGTTGGAACTGATCGTTTC TGCCGCGCTGGGAAATCAGGCGAGGAGATAGAGGCTTGCTTGTACGGGAGAAGGCCCCCTTTTCTCGAGCCCGCT TGGGCTGGATCATTTGACGGCTGGGCAGAAGATGATATGGGAACGGTGAAGTGGTGTTTCCTGGATGAAATCAAG GGGATCTACGACTCAGAAAGAGCATGTGTCGAATTCCGAACTCGTGCCTAG |
| Gene | >Hirsu2|2821 ATGCGCTTATTCAGTATCATCGCTGCTGCCGCTATGGCTCCAGCTGCTGTGTCGGCTTTCAACGGCCAGTCTGCG GACTTGGGGCAGATGAAGCCGAACCCTGCAGCCTATGAAGGTCTCCCTACGACCGTCTACGCGAAAGACTACCGA TGTGTTGTTGAAACAGACGATAAAAAATACGACTGCGCCTGGAGTTACTGCACAGGCTGGACCGAAGGGGCTAAC CCGGGTGCCGGGTTCAAGTACTACACCAGCACCAAGCATCATACCATTTCTCAGCTCAACGCCCCTAACCGAACC GACCTGAATCCTCCTCGCCCCGGAGACGCATGCTACAATGTATATACGGGGGTCGGCTGCGCTTGGCCGAGTTGG AGCCAGCTGGTATGCAAGGAGAGAACCGAGGAGTACCATCAGAAGTGGTACTATGGAGGCGCTTGGAGTGACAGC GGGAAGAAGTGCCGCCGGGGTAGGGACGGAAAGTATCCTTCCTGGTGTGAATGGCATGTTGGAACTGATCGTTTC TGCCGCGCTGGGAAATCAGGCGAGGAGATAGAGGCTTGCTTGTACGGGAGAAGGCCCCCTTTTCTCGAGCCCGCT TGGGCTGGATCATTTGACGGCTGGGCAGAAGATGATATGGGAACGGTGAAGTGGTGTTTCCTGGATGAAATCAAG GGGATCTACGACTCAGAAAGAGCATGTGTCGAATTCCGAACTCGTGCCTAG |