Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2808
Gene name
LocationContig_1696:3408..4477
Strand-
Gene length (bp)1069
Transcript length (bp)597
Coding sequence length (bp)597
Protein length (aa) 199

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02115 Rho_GDI RHO protein GDP dissociation inhibitor 2.3E-67 4 197

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1 22 198 9.0E-55
sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1 16 196 5.0E-43
sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3 21 198 9.0E-40
sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3 21 198 8.0E-39
sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3 21 198 2.0E-38
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Swissprot ID Swissprot Description Start End E-value
sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1 22 198 9.0E-55
sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1 16 196 5.0E-43
sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3 21 198 9.0E-40
sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3 21 198 8.0E-39
sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3 21 198 2.0E-38
sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1 5 198 1.0E-37
sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1 2 198 1.0E-37
sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3 2 198 1.0E-37
sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3 2 198 3.0E-37
sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3 2 198 3.0E-37
sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1 2 198 3.0E-37
sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor OS=Caenorhabditis elegans GN=rhi-1 PE=3 SV=1 1 197 2.0E-33
sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1 21 198 2.0E-32
sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=1 SV=2 22 198 1.0E-30
sp|Q0II80|GDIR3_BOVIN Rho GDP-dissociation inhibitor 3 OS=Bos taurus GN=ARHGDIG PE=2 SV=1 22 198 4.0E-30
sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2 SV=1 22 198 8.0E-30
sp|P80237|GDIR1_CAVPO Rho GDP-dissociation inhibitor 1 (Fragments) OS=Cavia porcellus GN=ARHGDIA PE=1 SV=1 54 196 1.0E-08
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GO

GO Term Description Terminal node
GO:0005737 cytoplasm Yes
GO:0005094 Rho GDP-dissociation inhibitor activity Yes
GO:0005575 cellular_component No
GO:0060589 nucleoside-triphosphatase regulator activity No
GO:0044464 cell part No
GO:0044424 intracellular part No
GO:0003674 molecular_function No
GO:0005092 GDP-dissociation inhibitor activity No
GO:0030234 enzyme regulator activity No
GO:0030695 GTPase regulator activity No
GO:0098772 molecular function regulator No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2808
MASHEEDTMPEETQGYKLSQPKQSLAEYQQMDAGDESLQRYKESLGLGLGKDMSDAQDPRVCIILSLTMDSPGRD
PVTIDLSQPGSEKSLKDRPFKIKEGARFTMSAQFKVQHEILSGLHYVQVVKRKGIKVSKDSEMIGSYAPNTDKQT
TYTKKFQEEEAPSGMLARGHYNAISSFVDDDKKKHLEFEWSFDIAKDW*
Coding >Hirsu2|2808
ATGGCCTCCCACGAAGAGGACACGATGCCCGAGGAGACGCAGGGCTACAAGCTCTCCCAGCCCAAGCAGAGCTTG
GCTGAGTACCAGCAGATGGATGCCGGCGACGAATCGCTCCAACGGTACAAGGAGTCGCTCGGGCTCGGGCTCGGC
AAGGACATGTCCGACGCCCAAGACCCGCGCGTGTGCATCATCCTGTCCCTGACCATGGACTCGCCCGGCCGCGAC
CCGGTCACCATCGACCTGTCCCAGCCCGGCAGCGAGAAGTCGCTCAAGGACCGGCCCTTCAAGATCAAGGAGGGC
GCCCGCTTCACCATGAGCGCCCAGTTCAAGGTCCAGCACGAGATCCTCAGCGGCCTGCACTACGTCCAGGTCGTC
AAGCGCAAGGGCATCAAGGTCTCCAAGGACTCCGAGATGATTGGAAGCTATGCCCCCAACACGGACAAGCAAACC
ACGTACACCAAGAAATTCCAAGAGGAGGAAGCCCCGTCCGGCATGCTCGCCCGCGGCCACTACAACGCCATCTCG
AGCTTCGTCGACGACGACAAGAAGAAGCACCTCGAGTTCGAGTGGAGTTTCGACATCGCCAAGGACTGGTGA
Transcript >Hirsu2|2808
ATGGCCTCCCACGAAGAGGACACGATGCCCGAGGAGACGCAGGGCTACAAGCTCTCCCAGCCCAAGCAGAGCTTG
GCTGAGTACCAGCAGATGGATGCCGGCGACGAATCGCTCCAACGGTACAAGGAGTCGCTCGGGCTCGGGCTCGGC
AAGGACATGTCCGACGCCCAAGACCCGCGCGTGTGCATCATCCTGTCCCTGACCATGGACTCGCCCGGCCGCGAC
CCGGTCACCATCGACCTGTCCCAGCCCGGCAGCGAGAAGTCGCTCAAGGACCGGCCCTTCAAGATCAAGGAGGGC
GCCCGCTTCACCATGAGCGCCCAGTTCAAGGTCCAGCACGAGATCCTCAGCGGCCTGCACTACGTCCAGGTCGTC
AAGCGCAAGGGCATCAAGGTCTCCAAGGACTCCGAGATGATTGGAAGCTATGCCCCCAACACGGACAAGCAAACC
ACGTACACCAAGAAATTCCAAGAGGAGGAAGCCCCGTCCGGCATGCTCGCCCGCGGCCACTACAACGCCATCTCG
AGCTTCGTCGACGACGACAAGAAGAAGCACCTCGAGTTCGAGTGGAGTTTCGACATCGCCAAGGACTGGTGA
Gene >Hirsu2|2808
ATGGCCTCCCACGAAGAGGACACGATGCCCGAGGAGACGCAGGGCTACAAGCTCTCCCAGCCCAAGCAGAGCTTG
GCTGAGTACCAGCAGATGGGTATGCACCGCGCGTCCCGGCCCCATCGCAACGCCGAGAGGGAGAGAGAGAAAGAG
AGGGAGGGGGAGAGAGAGAGAGAGAGAGGGAGAGATGGGAGCCGAAGCCGGACGCGTCGAGCGAGGAACTCTGCC
CGCGGAGACCGTCGAATCCACGACCGCATCTCTCCTCTCCCCGTTGACGTCCTGCTCCCGCCAAAACGACCAAGA
CCAAAAACACACACACACACACACACCGACCACTTCCTACCGCCCTCCCTCTTCTCCCTCCTCTCCCAAGCCCGC
AACGAACCGAGCGTGAGCGGCGGCGGCTGACCCCTCCCCGCAACGGAATAGATGCCGGCGACGAATCGCTCCAAC
GGTACAAGGAGTCGCTCGGGCTCGGGCTCGGCAAGGACATGTCCGACGCCCAAGACCCGCGCGTGTGCATCATCC
TGTCCCTGACCATGGACTCGCCCGGCCGCGACCCGGTCACCATCGACCTGTCCCAGCCCGGCAGCGAGAAGTCGC
TCAAGGACCGGCCCTTCAAGATCAAGGAGGGCGCCCGCTTCACCATGAGCGCCCAGTTCAAGGTCCAGCACGAGA
TCCTCAGCGGCCTGCACTACGTCCAGGTCGTCAAGCGCAAGGGCATCAAGGTCTCCAAGGACTCCGAGATGATTG
TGAGCAAAGCGATCCGGGCCGCCCCCGTTCCGCCGCTGACGTCCCGCCCCTTTGTCCCCACGCAGGGAAGCTATG
CCCCCAACACGGACAAGCAAACCACGTACACCAAGAAATGTAGGCAGAGACGGCACCACCCCCCCCCCTTTCTCT
TCCCGCCAAGCCGACCCTCTGCTGACTCTCCCGCCCAGTCCAAGAGGAGGAAGCCCCGTCCGGCATGCTCGCCCG
CGGCCACTACAACGCCATCTCGAGCTTCGTCGACGACGACAAGAAGAAGCACCTCGAGTTCGAGTGGAGTTTCGA
CATCGCCAAGGACTGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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