© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2795 |
| Gene name | |
| Location | Contig_1690:11..2152 |
| Strand | + |
| Gene length (bp) | 2141 |
| Transcript length (bp) | 2049 |
| Coding sequence length (bp) | 2049 |
| Protein length (aa) | 683 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00520 | Ion_trans | Ion transport protein | 1.4E-07 | 294 | 507 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12324|YVC1_YEAST | Calcium channel YVC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YVC1 PE=1 SV=2 | 219 | 668 | 6.0E-14 |
| sp|Q5A2J7|YVC1_CANAL | Calcium channel YVC1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YVC1 PE=2 SV=1 | 219 | 584 | 1.0E-13 |
| sp|O62852|TRPC5_RABIT | Short transient receptor potential channel 5 OS=Oryctolagus cuniculus GN=TRPC5 PE=2 SV=1 | 204 | 542 | 1.0E-09 |
| sp|Q9QX29|TRPC5_MOUSE | Short transient receptor potential channel 5 OS=Mus musculus GN=Trpc5 PE=1 SV=2 | 204 | 542 | 1.0E-09 |
| sp|Q9UL62|TRPC5_HUMAN | Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1 | 204 | 542 | 2.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12324|YVC1_YEAST | Calcium channel YVC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YVC1 PE=1 SV=2 | 219 | 668 | 6.0E-14 |
| sp|Q5A2J7|YVC1_CANAL | Calcium channel YVC1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YVC1 PE=2 SV=1 | 219 | 584 | 1.0E-13 |
| sp|O62852|TRPC5_RABIT | Short transient receptor potential channel 5 OS=Oryctolagus cuniculus GN=TRPC5 PE=2 SV=1 | 204 | 542 | 1.0E-09 |
| sp|Q9QX29|TRPC5_MOUSE | Short transient receptor potential channel 5 OS=Mus musculus GN=Trpc5 PE=1 SV=2 | 204 | 542 | 1.0E-09 |
| sp|Q9UL62|TRPC5_HUMAN | Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1 | 204 | 542 | 2.0E-09 |
| sp|Q8R455|TRPM8_RAT | Transient receptor potential cation channel subfamily M member 8 OS=Rattus norvegicus GN=Trpm8 PE=1 SV=4 | 215 | 415 | 2.0E-07 |
| sp|Q8R4D5|TRPM8_MOUSE | Transient receptor potential cation channel subfamily M member 8 OS=Mus musculus GN=Trpm8 PE=1 SV=3 | 215 | 415 | 2.0E-07 |
| sp|Q7Z2W7|TRPM8_HUMAN | Transient receptor potential cation channel subfamily M member 8 OS=Homo sapiens GN=TRPM8 PE=1 SV=2 | 215 | 415 | 3.0E-07 |
| sp|Q9QUQ5|TRPC4_MOUSE | Short transient receptor potential channel 4 OS=Mus musculus GN=Trpc4 PE=1 SV=1 | 313 | 542 | 4.0E-07 |
| sp|P79100|TRPC4_BOVIN | Short transient receptor potential channel 4 OS=Bos taurus GN=TRPC4 PE=2 SV=2 | 313 | 542 | 4.0E-07 |
| sp|O35119|TRPC4_RAT | Short transient receptor potential channel 4 OS=Rattus norvegicus GN=Trpc4 PE=1 SV=2 | 313 | 542 | 5.0E-07 |
| sp|Q9UBN4|TRPC4_HUMAN | Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1 | 313 | 542 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0005216 | ion channel activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006811 | ion transport | Yes |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 288 | 305 | 17 |
| 2 | 346 | 368 | 22 |
| 3 | 390 | 412 | 22 |
| 4 | 419 | 441 | 22 |
| 5 | 446 | 468 | 22 |
| 6 | 475 | 497 | 22 |
| 7 | 532 | 554 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2795 MPIRLRTRLPAPRDVSPVSARLEFDLPDIDDDDSFRQVAAKLSGYFVDAVDLPSTFEQLRTTAAGNCIRVLVDHL YASCSNPATVHALLALKWHYAAESEHVGLSETRSNACEIVAWRFLARLSGREAMDFCLYEIPAEHHIDHDPGQHR PRQLPCEHDGEAAETSPLIRRIRLGPQLDVPPVGRPSKRTKLESSLPGLTRDADDPVDDLDPTAAFKGLNALEIA AVADAKRFLSQHLVQKIISGIWNGDIVFWDALSVRASKKPRFYDAETADPFSRLRVPKYLKSWEVVFFAVFLCLY YAVLVARVESHVTATEVALFVWIAAFAYDELSEWIDAGSIFYTTDIWNLFDLTMILISFIFAALRIIGLARQDSY LTGLAFDILSLEALFMMPRLCSVLSLSPYWGTLIPCLKEMGKDFLKFMVLVVIVYLGFLTTFSLVGRDSFSLYTM TGILTKIFFGNSYVGFEIMNQIDTVFGPPLMIIFITLTSILLTGSLTGMLSNSFSRVITHAREEYLYVYSVYVLE ASTSNRLTHFYPPFNLIALIIFRPLRLVFSRDEKFRAGRIVLLKITHLPVVAAIKLYELIRQKVGSERQASLRGQ PKAKRGAARTQVLFGRPSSGHSRQQLQPLRGLQTTRDEDDVEVPSPVEVQLAEMNRKIDKLTSVVMALQAGQTGA PLGEKAT* |
| Coding | >Hirsu2|2795 ATGCCCATCCGCCTCCGGACGCGGCTCCCGGCGCCGCGCGACGTGAGCCCCGTCTCGGCCCGGCTCGAGTTCGAC CTGCCCGACATCGACGACGACGACTCGTTCCGCCAAGTGGCCGCCAAGCTGTCCGGCTACTTTGTCGATGCCGTC GATCTGCCCAGCACCTTCGAGCAGCTGCGGACGACGGCCGCCGGCAACTGCATCCGCGTTCTGGTCGACCATCTG TACGCCTCGTGCTCCAACCCGGCTACGGTCCACGCCCTGCTCGCCCTCAAGTGGCACTACGCCGCCGAGAGCGAG CACGTCGGACTGAGCGAGACGCGCTCCAACGCCTGCGAGATCGTTGCCTGGCGCTTCCTCGCCCGCCTGTCGGGG CGCGAGGCCATGGACTTTTGCCTCTACGAGATCCCAGCCGAGCATCACATTGACCACGACCCGGGCCAGCATCGC CCTCGGCAGCTGCCGTGCGAGCACGACGGAGAGGCTGCCGAGACGTCACCGCTGATCCGCCGCATCCGTCTCGGC CCCCAGCTCGACGTCCCGCCCGTCGGCCGCCCCTCCAAGCGCACCAAGCTGGAGAGCTCCCTGCCCGGCCTGACG CGTGACGCCGACGACCCCGTCGACGACCTGGATCCCACGGCCGCCTTCAAGGGCCTCAACGCACTCGAGATTGCC GCCGTCGCCGACGCCAAGCGCTTCCTCAGCCAGCACCTCGTCCAGAAAATCATCAGCGGCATCTGGAACGGCGAC ATTGTCTTCTGGGACGCCCTGTCCGTCCGCGCCAGCAAGAAGCCCCGCTTCTACGACGCCGAGACTGCGGACCCC TTCTCGCGCCTGCGCGTCCCCAAGTACCTCAAGAGCTGGGAGGTCGTCTTCTTCGCCGTCTTCCTCTGCCTCTAC TACGCCGTCCTGGTCGCCCGCGTCGAGAGCCACGTCACCGCCACCGAGGTCGCCCTCTTCGTCTGGATCGCCGCC TTCGCCTACGACGAGCTGAGCGAGTGGATCGACGCCGGCTCCATCTTCTACACCACCGACATCTGGAATCTTTTT GACCTGACCATGATCCTCATCAGCTTTATCTTCGCTGCCCTGAGAATCATCGGCCTCGCTCGGCAGGACAGCTAC CTCACCGGCCTCGCCTTCGACATCCTATCGCTCGAGGCCCTTTTCATGATGCCGCGCCTGTGCTCCGTCCTCAGC CTGAGCCCCTACTGGGGCACCCTGATACCCTGTCTTAAGGAGATGGGCAAGGACTTCCTCAAGTTCATGGTGCTC GTCGTCATCGTCTACCTCGGCTTCCTCACCACCTTCTCCCTCGTCGGTCGTGACTCCTTCAGCCTGTACACCATG ACCGGCATCTTGACCAAAATCTTCTTCGGCAACAGCTACGTCGGCTTCGAAATCATGAACCAGATCGACACCGTC TTTGGGCCCCCGCTCATGATCATCTTCATCACCCTGACGTCCATCCTGCTGACCGGGTCCCTGACGGGCATGTTG TCCAACAGCTTCTCTCGCGTCATCACGCATGCCCGAGAGGAGTATCTATACGTCTACAGCGTCTACGTGTTGGAG GCGTCGACCAGCAACAGGCTCACCCACTTCTATCCGCCCTTCAACCTCATCGCCCTCATTATTTTTCGACCCTTG CGACTCGTCTTCTCTAGGGATGAAAAGTTTCGTGCCGGCCGCATTGTCCTGCTCAAAATCACCCACCTCCCCGTC GTGGCGGCCATCAAGCTCTACGAGCTCATCCGACAAAAGGTCGGCAGTGAGCGCCAGGCCAGCCTTCGAGGTCAA CCGAAGGCCAAACGGGGGGCGGCAAGGACGCAGGTGCTGTTCGGCAGACCGTCTTCCGGCCATAGTCGACAGCAG CTGCAGCCTCTGCGGGGCTTGCAGACGACGAGAGACGAGGACGACGTGGAAGTCCCTTCTCCCGTCGAGGTCCAG CTGGCGGAGATGAATCGCAAGATCGATAAACTCACCTCGGTGGTCATGGCTTTGCAGGCGGGCCAGACTGGGGCC CCTCTAGGTGAGAAAGCTACGTAA |
| Transcript | >Hirsu2|2795 ATGCCCATCCGCCTCCGGACGCGGCTCCCGGCGCCGCGCGACGTGAGCCCCGTCTCGGCCCGGCTCGAGTTCGAC CTGCCCGACATCGACGACGACGACTCGTTCCGCCAAGTGGCCGCCAAGCTGTCCGGCTACTTTGTCGATGCCGTC GATCTGCCCAGCACCTTCGAGCAGCTGCGGACGACGGCCGCCGGCAACTGCATCCGCGTTCTGGTCGACCATCTG TACGCCTCGTGCTCCAACCCGGCTACGGTCCACGCCCTGCTCGCCCTCAAGTGGCACTACGCCGCCGAGAGCGAG CACGTCGGACTGAGCGAGACGCGCTCCAACGCCTGCGAGATCGTTGCCTGGCGCTTCCTCGCCCGCCTGTCGGGG CGCGAGGCCATGGACTTTTGCCTCTACGAGATCCCAGCCGAGCATCACATTGACCACGACCCGGGCCAGCATCGC CCTCGGCAGCTGCCGTGCGAGCACGACGGAGAGGCTGCCGAGACGTCACCGCTGATCCGCCGCATCCGTCTCGGC CCCCAGCTCGACGTCCCGCCCGTCGGCCGCCCCTCCAAGCGCACCAAGCTGGAGAGCTCCCTGCCCGGCCTGACG CGTGACGCCGACGACCCCGTCGACGACCTGGATCCCACGGCCGCCTTCAAGGGCCTCAACGCACTCGAGATTGCC GCCGTCGCCGACGCCAAGCGCTTCCTCAGCCAGCACCTCGTCCAGAAAATCATCAGCGGCATCTGGAACGGCGAC ATTGTCTTCTGGGACGCCCTGTCCGTCCGCGCCAGCAAGAAGCCCCGCTTCTACGACGCCGAGACTGCGGACCCC TTCTCGCGCCTGCGCGTCCCCAAGTACCTCAAGAGCTGGGAGGTCGTCTTCTTCGCCGTCTTCCTCTGCCTCTAC TACGCCGTCCTGGTCGCCCGCGTCGAGAGCCACGTCACCGCCACCGAGGTCGCCCTCTTCGTCTGGATCGCCGCC TTCGCCTACGACGAGCTGAGCGAGTGGATCGACGCCGGCTCCATCTTCTACACCACCGACATCTGGAATCTTTTT GACCTGACCATGATCCTCATCAGCTTTATCTTCGCTGCCCTGAGAATCATCGGCCTCGCTCGGCAGGACAGCTAC CTCACCGGCCTCGCCTTCGACATCCTATCGCTCGAGGCCCTTTTCATGATGCCGCGCCTGTGCTCCGTCCTCAGC CTGAGCCCCTACTGGGGCACCCTGATACCCTGTCTTAAGGAGATGGGCAAGGACTTCCTCAAGTTCATGGTGCTC GTCGTCATCGTCTACCTCGGCTTCCTCACCACCTTCTCCCTCGTCGGTCGTGACTCCTTCAGCCTGTACACCATG ACCGGCATCTTGACCAAAATCTTCTTCGGCAACAGCTACGTCGGCTTCGAAATCATGAACCAGATCGACACCGTC TTTGGGCCCCCGCTCATGATCATCTTCATCACCCTGACGTCCATCCTGCTGACCGGGTCCCTGACGGGCATGTTG TCCAACAGCTTCTCTCGCGTCATCACGCATGCCCGAGAGGAGTATCTATACGTCTACAGCGTCTACGTGTTGGAG GCGTCGACCAGCAACAGGCTCACCCACTTCTATCCGCCCTTCAACCTCATCGCCCTCATTATTTTTCGACCCTTG CGACTCGTCTTCTCTAGGGATGAAAAGTTTCGTGCCGGCCGCATTGTCCTGCTCAAAATCACCCACCTCCCCGTC GTGGCGGCCATCAAGCTCTACGAGCTCATCCGACAAAAGGTCGGCAGTGAGCGCCAGGCCAGCCTTCGAGGTCAA CCGAAGGCCAAACGGGGGGCGGCAAGGACGCAGGTGCTGTTCGGCAGACCGTCTTCCGGCCATAGTCGACAGCAG CTGCAGCCTCTGCGGGGCTTGCAGACGACGAGAGACGAGGACGACGTGGAAGTCCCTTCTCCCGTCGAGGTCCAG CTGGCGGAGATGAATCGCAAGATCGATAAACTCACCTCGGTGGTCATGGCTTTGCAGGCGGGCCAGACTGGGGCC CCTCTAGGTGAGAAAGCTACGTAA |
| Gene | >Hirsu2|2795 ATGCCCATCCGCCTCCGGACGCGGCTCCCGGCGCCGCGCGACGTGAGCCCCGTCTCGGCCCGGCTCGAGTTCGAC CTGCCCGACATCGACGACGACGACTCGTTCCGCCAAGTGGCCGCCAAGCTGTCCGGCTACTTTGTCGATGCCGTC GATCTGCCCAGCACCTTCGAGCAGCTGCGGACGACGGCCGCCGGCAACTGCATCCGCGTTCTGGTCGACCATCTG TACGCCTCGTGCTCCAACCCGGCTACGGTCCACGCCCTGCTCGCCCTCAAGTGGCACTACGCCGCCGAGAGCGAG CACGTCGGACTGAGCGAGACGCGCTCCAACGCCTGCGAGATCGTTGCCTGGCGCTTCCTCGCCCGCCTGTCGGGG CGCGAGGCCATGGACTTTTGCCTCTACGAGATCCCAGCCGAGCATCACATTGACCACGACCCGGGCCAGCATCGC CCTCGGCAGCTGCCGTGCGAGCACGACGGAGAGGCTGCCGAGACGTCACCGCTGATCCGCCGCATCCGTCTCGGC CCCCAGCTCGACGTCCCGCCCGTCGGCCGCCCCTCCAAGCGCACCAAGCTGGAGAGCTCCCTGCCCGGCCTGACG CGTGACGCCGACGACCCCGTCGACGACCTGGATCCCACGGCCGCCTTCAAGGGCCTCAACGCACTCGAGATTGCC GCCGTCGCCGACGCCAAGCGCTTCCTCAGCCAGCACCTCGTCCAGAAAATCATCAGCGGCATCTGGAACGGCGAC ATTGTCTTCTGGGACGCCCTGTCCGTCCGCGCCAGCAAGAAGCCCCGCTTCTACGACGCCGAGACTGCGGACCCC TTCTCGCGCCTGCGCGTCCCCAAGTACCTCAAGAGCTGGGAGGTCGTCTTCTTCGCCGTCTTCCTCTGCCTCTAC TACGCCGTCCTGGTCGCCCGCGTCGAGAGCCACGTCACCGCCACCGAGGTCGCCCTCTTCGTCTGGATCGCCGCC TTCGCCTACGACGAGCTGAGCGAGTGGATCGACGCCGGCTCCATCTTCTACACCACCGACATCTGGAATCTTTTT GACCTGACCATGATCCTCATCAGCTTTATCTTCGCTGCCCTGAGTGAGTAGGGCTGCGGCCTCTTCCCCCCATAG TCCCCCACGGCCTGGCTCTCCAAGGCTTGTGCTGACCTTGCACGTGTCCTCAACTTCAAGGAATCATCGGCCTCG CTCGGCAGGACAGCTACCTCACCGGCCTCGCCTTCGACATCCTATCGCTCGAGGCCCTTTTCATGATGCCGCGCC TGTGCTCCGTCCTCAGCCTGAGCCCCTACTGGGGCACCCTGATACCCTGTCTTAAGGAGATGGGCAAGGACTTCC TCAAGTTCATGGTGCTCGTCGTCATCGTCTACCTCGGCTTCCTCACCACCTTCTCCCTCGTCGGTCGTGACTCCT TCAGCCTGTACACCATGACCGGCATCTTGACCAAAATCTTCTTCGGCAACAGCTACGTCGGCTTCGAAATCATGA ACCAGATCGACACCGTCTTTGGGCCCCCGCTCATGATCATCTTCATCACCCTGACGTCCATCCTGCTGACCGGGT CCCTGACGGGCATGTTGTCCAACAGCTTCTCTCGCGTCATCACGCATGCCCGAGAGGAGTATCTATACGTCTACA GCGTCTACGTGTTGGAGGCGTCGACCAGCAACAGGCTCACCCACTTCTATCCGCCCTTCAACCTCATCGCCCTCA TTATTTTTCGACCCTTGCGACTCGTCTTCTCTAGGGATGAAAAGTTTCGTGCCGGCCGCATTGTCCTGCTCAAAA TCACCCACCTCCCCGTCGTGGCGGCCATCAAGCTCTACGAGCTCATCCGACAAAAGGTCGGCAGTGAGCGCCAGG CCAGCCTTCGAGGTCAACCGAAGGCCAAACGGGGGGCGGCAAGGACGCAGGTGCTGTTCGGCAGACCGTCTTCCG GCCATAGTCGACAGCAGCTGCAGCCTCTGCGGGGCTTGCAGACGACGAGAGACGAGGACGACGTGGAAGTCCCTT CTCCCGTCGAGGTCCAGCTGGCGGAGATGAATCGCAAGATCGATAAACTCACCTCGGTGGTCATGGCTTTGCAGG CGGGCCAGACTGGGGCCCCTCTAGGTGAGAAAGCTACGTAA |