© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|277 |
| Gene name | |
| Location | Contig_1050:2126..4176 |
| Strand | - |
| Gene length (bp) | 2050 |
| Transcript length (bp) | 1944 |
| Coding sequence length (bp) | 1944 |
| Protein length (aa) | 648 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.2E-31 | 114 | 584 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 4.2E-06 | 142 | 255 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 107 | 615 | 4.0E-38 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 92 | 300 | 2.0E-13 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 107 | 301 | 4.0E-12 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 108 | 261 | 5.0E-12 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 405 | 592 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 107 | 615 | 4.0E-38 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 92 | 300 | 2.0E-13 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 107 | 301 | 4.0E-12 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 108 | 261 | 5.0E-12 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 405 | 592 | 2.0E-10 |
| sp|P51563|TCR7_VIBAN | Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1 | 122 | 322 | 6.0E-09 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 118 | 296 | 4.0E-07 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 108 | 263 | 4.0E-07 |
| sp|P33733|TCR4_SALOR | Tetracycline resistance protein, class D OS=Salmonella ordonez GN=tetA PE=3 SV=1 | 118 | 307 | 8.0E-07 |
| sp|Q9D2V8|MFS10_MOUSE | Major facilitator superfamily domain-containing protein 10 OS=Mus musculus GN=Mfsd10 PE=1 SV=1 | 138 | 267 | 4.0E-06 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 380 | 594 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.231 | 0.1414 | 0.1091 | 0.3102 | 0.2143 | 0.0076 | 0.3892 | 0.4889 | 0.278 | 0.0496 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 150 | 172 | 22 |
| 2 | 182 | 204 | 22 |
| 3 | 239 | 261 | 22 |
| 4 | 271 | 293 | 22 |
| 5 | 425 | 447 | 22 |
| 6 | 462 | 484 | 22 |
| 7 | 491 | 513 | 22 |
| 8 | 533 | 555 | 22 |
| 9 | 603 | 625 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2202 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|277 MPQAKSRSGGAPQRPGLAPPLPSAGRTVSSGSFHAGAPIPTLAGLRRASTYRYQTFPTQPPLPPPAERPDDGSCS DSACSSSSPPPSSPSSTPSSTPSSSTSEQTPLPVRQLLLLAFLSLSEQTALNSISPYLPRMVASMPGVPAGQSGL YVGILASAFALAQLSTNFLWGYASDVVGRKPVLLAGTSALTCCFCVFGLCRLYWQAVVVHVAMGLLNGNAACVPT VLGEVTDRSNQSKAFTYLPVIYSLGGITGPALGGLLVGRLGPDYPYLGPNVLAAAMLATSVAAVALWFDETLDDQ SGPGPWKPRWIARLSAWLRRRGNPRAHRNSWSSRWPYRQAAGNNNDGNDNNQQQQQRRPLLAPEAASVADDDYDD YDDDDDEDTDDSHSPSDAHGHAASAASKAGPDEERPPVWRDLLNGTTITLLTTYLVFQLSNISFNSLYPIFASAP APTGRELSPGRIGVSLSLAGLATIIFQAFLYQPLKARTGSLGAYRLSLLGIAVSMALIPWVGYLDDDPPLGLGTG RLWLYLELGIVLVLKNICAVSGLSSVMLLITNSAPSHASLGTLNGVAQTLSALGRSFGPFVSGGLFTLSINVRPK GEALAWSVFGGLALLGWLGSMFIRGNGLESEDWDDDGDGDYREHDSV* |
| Coding | >Hirsu2|277 ATGCCCCAGGCCAAGTCGCGCTCCGGCGGCGCCCCGCAGCGCCCCGGCCTTGCGCCGCCGCTGCCGTCCGCCGGC CGCACCGTCTCGTCCGGGTCTTTCCATGCCGGGGCGCCAATCCCGACCCTGGCCGGCCTGCGCCGCGCCTCGACC TACCGCTACCAGACGTTCCCCACGCAGCCGCCCCTGCCGCCGCCCGCGGAGCGGCCCGACGACGGCTCCTGTTCG GACTCGGCCTGTTCTTCTTCCTCTCCTCCCCCGTCGTCGCCCTCGTCGACGCCCTCGTCGACGCCCTCGTCGTCT ACTAGCGAACAGACGCCCTTGCCAGTGCGGCAACTCCTCCTCCTGGCCTTCCTGTCGCTCTCGGAGCAGACGGCG CTCAACTCCATCTCGCCCTACCTGCCGCGCATGGTGGCGTCTATGCCCGGCGTGCCGGCCGGCCAGAGCGGTCTG TACGTCGGCATACTGGCCAGCGCCTTCGCCCTGGCGCAGCTGTCGACAAACTTCCTCTGGGGCTACGCCTCGGAC GTCGTCGGCCGCAAGCCTGTCCTCCTGGCTGGCACCTCGGCCCTCACCTGCTGCTTCTGCGTCTTCGGCCTGTGC CGCCTGTACTGGCAGGCCGTCGTCGTCCACGTCGCCATGGGCCTGCTTAACGGCAACGCCGCCTGCGTGCCCACC GTTCTGGGCGAGGTCACCGACCGTTCCAACCAGAGCAAGGCCTTCACCTACCTGCCCGTCATCTACTCCCTCGGC GGCATCACCGGGCCGGCCCTGGGCGGCCTGCTCGTTGGCCGCCTGGGGCCCGACTACCCCTACTTGGGGCCCAAC GTCCTCGCCGCCGCCATGCTGGCCACCAGCGTCGCCGCCGTCGCCCTCTGGTTCGACGAGACGCTCGATGACCAG TCCGGCCCGGGCCCCTGGAAGCCGCGCTGGATTGCTCGCCTGTCCGCCTGGCTACGCCGCCGAGGAAACCCGAGG GCTCATCGGAACTCATGGAGCTCGCGTTGGCCGTACCGTCAGGCTGCCGGCAACAACAACGATGGCAATGACAAC AACCAGCAGCAGCAACAGCGGCGGCCCTTGCTCGCGCCTGAGGCCGCCTCCGTCGCCGACGACGACTATGACGAC TACGACGACGACGACGACGAAGACACCGACGACAGCCACAGTCCCTCCGACGCGCACGGCCACGCCGCCTCCGCC GCCTCCAAGGCAGGGCCTGATGAAGAGCGGCCGCCGGTCTGGCGCGACCTCCTCAACGGTACCACCATCACCCTG CTCACCACCTACCTCGTCTTTCAGCTGTCCAACATCAGCTTCAACAGCCTGTACCCCATCTTCGCCTCGGCGCCC GCCCCGACCGGCCGCGAGCTGAGCCCCGGCCGGATCGGCGTCAGCCTAAGCCTGGCCGGCCTGGCCACCATCATC TTCCAGGCCTTCCTCTACCAGCCGCTCAAGGCCAGGACCGGTAGTCTGGGCGCCTACCGCCTGTCCCTGCTAGGT ATCGCCGTCAGCATGGCCCTCATCCCCTGGGTCGGCTATCTAGACGACGACCCGCCCCTGGGCCTCGGCACCGGC CGCCTCTGGCTCTACCTTGAGCTCGGCATCGTGCTCGTCCTCAAGAACATCTGCGCCGTCAGCGGTCTGTCCAGC GTTATGCTCCTGATCACCAACTCGGCGCCCTCGCACGCAAGCCTCGGGACCCTGAACGGCGTGGCCCAGACGCTC TCAGCCTTGGGTCGCAGCTTTGGGCCCTTCGTCTCCGGTGGCCTCTTCACCCTCTCCATCAACGTGCGGCCCAAG GGTGAAGCCCTCGCCTGGAGCGTCTTCGGCGGCCTGGCCCTCCTCGGCTGGCTCGGCTCCATGTTCATCCGCGGC AACGGCCTGGAGAGCGAGGACTGGGACGACGACGGCGACGGCGACTACCGCGAGCACGACTCTGTTTGA |
| Transcript | >Hirsu2|277 ATGCCCCAGGCCAAGTCGCGCTCCGGCGGCGCCCCGCAGCGCCCCGGCCTTGCGCCGCCGCTGCCGTCCGCCGGC CGCACCGTCTCGTCCGGGTCTTTCCATGCCGGGGCGCCAATCCCGACCCTGGCCGGCCTGCGCCGCGCCTCGACC TACCGCTACCAGACGTTCCCCACGCAGCCGCCCCTGCCGCCGCCCGCGGAGCGGCCCGACGACGGCTCCTGTTCG GACTCGGCCTGTTCTTCTTCCTCTCCTCCCCCGTCGTCGCCCTCGTCGACGCCCTCGTCGACGCCCTCGTCGTCT ACTAGCGAACAGACGCCCTTGCCAGTGCGGCAACTCCTCCTCCTGGCCTTCCTGTCGCTCTCGGAGCAGACGGCG CTCAACTCCATCTCGCCCTACCTGCCGCGCATGGTGGCGTCTATGCCCGGCGTGCCGGCCGGCCAGAGCGGTCTG TACGTCGGCATACTGGCCAGCGCCTTCGCCCTGGCGCAGCTGTCGACAAACTTCCTCTGGGGCTACGCCTCGGAC GTCGTCGGCCGCAAGCCTGTCCTCCTGGCTGGCACCTCGGCCCTCACCTGCTGCTTCTGCGTCTTCGGCCTGTGC CGCCTGTACTGGCAGGCCGTCGTCGTCCACGTCGCCATGGGCCTGCTTAACGGCAACGCCGCCTGCGTGCCCACC GTTCTGGGCGAGGTCACCGACCGTTCCAACCAGAGCAAGGCCTTCACCTACCTGCCCGTCATCTACTCCCTCGGC GGCATCACCGGGCCGGCCCTGGGCGGCCTGCTCGTTGGCCGCCTGGGGCCCGACTACCCCTACTTGGGGCCCAAC GTCCTCGCCGCCGCCATGCTGGCCACCAGCGTCGCCGCCGTCGCCCTCTGGTTCGACGAGACGCTCGATGACCAG TCCGGCCCGGGCCCCTGGAAGCCGCGCTGGATTGCTCGCCTGTCCGCCTGGCTACGCCGCCGAGGAAACCCGAGG GCTCATCGGAACTCATGGAGCTCGCGTTGGCCGTACCGTCAGGCTGCCGGCAACAACAACGATGGCAATGACAAC AACCAGCAGCAGCAACAGCGGCGGCCCTTGCTCGCGCCTGAGGCCGCCTCCGTCGCCGACGACGACTATGACGAC TACGACGACGACGACGACGAAGACACCGACGACAGCCACAGTCCCTCCGACGCGCACGGCCACGCCGCCTCCGCC GCCTCCAAGGCAGGGCCTGATGAAGAGCGGCCGCCGGTCTGGCGCGACCTCCTCAACGGTACCACCATCACCCTG CTCACCACCTACCTCGTCTTTCAGCTGTCCAACATCAGCTTCAACAGCCTGTACCCCATCTTCGCCTCGGCGCCC GCCCCGACCGGCCGCGAGCTGAGCCCCGGCCGGATCGGCGTCAGCCTAAGCCTGGCCGGCCTGGCCACCATCATC TTCCAGGCCTTCCTCTACCAGCCGCTCAAGGCCAGGACCGGTAGTCTGGGCGCCTACCGCCTGTCCCTGCTAGGT ATCGCCGTCAGCATGGCCCTCATCCCCTGGGTCGGCTATCTAGACGACGACCCGCCCCTGGGCCTCGGCACCGGC CGCCTCTGGCTCTACCTTGAGCTCGGCATCGTGCTCGTCCTCAAGAACATCTGCGCCGTCAGCGGTCTGTCCAGC GTTATGCTCCTGATCACCAACTCGGCGCCCTCGCACGCAAGCCTCGGGACCCTGAACGGCGTGGCCCAGACGCTC TCAGCCTTGGGTCGCAGCTTTGGGCCCTTCGTCTCCGGTGGCCTCTTCACCCTCTCCATCAACGTGCGGCCCAAG GGTGAAGCCCTCGCCTGGAGCGTCTTCGGCGGCCTGGCCCTCCTCGGCTGGCTCGGCTCCATGTTCATCCGCGGC AACGGCCTGGAGAGCGAGGACTGGGACGACGACGGCGACGGCGACTACCGCGAGCACGACTCTGTTTGA |
| Gene | >Hirsu2|277 ATGCCCCAGGCCAAGTCGCGCTCCGGCGGCGCCCCGCAGCGCCCCGGCCTTGCGCCGCCGCTGCCGTCCGCCGGC CGCACCGTCTCGTCCGGGTCTTTCCATGCCGGGGCGCCAATCCCGACCCTGGCCGGCCTGCGCCGCGCCTCGACC TACCGCTACCAGACGTTCCCCACGCAGCCGCCCCTGCCGCCGCCCGCGGAGCGGCCCGACGACGGCTCCTGTTCG GACTCGGCCTGTTCTTCTTCCTCTCCTCCCCCGTCGTCGCCCTCGTCGACGCCCTCGTCGACGCCCTCGTCGTCT ACTAGCGAACAGACGCCCTTGCCAGTGCGGCAACTCCTCCTCCTGGCCTTCCTGTCGCTCTCGGAGCAGACGGCG CTCAACTCCATCTCGCCCTACCTGCCGCGCATGGTGGCGTCTATGCCCGGCGTGCCGGCCGGCCAGAGCGGTCTG TACGTCGGCATACTGGCCAGCGCCTTCGCCCTGGCGCAGCTGTCGACAAACTTCCTCTGGGGCTACGCCTCGGAC GTCGTCGGCCGCAAGCCTGTCCTCCTGGCTGGCACCTCGGCCCTCACCTGCTGCTTCTGCGTCTTCGGCCTGTGC CGCCTGTACTGGCAGGCCGTCGTCGTCCACGTCGCCATGGGCCTGCTTAACGGCAACGCCGCCTGCGTGCCCACC GTTCTGGGCGAGGTCACCGACCGTTCCAACCAGAGCAAGGCCTTCACCTACCTGCCCGTCATCTACTCCCTCGGC GGCATCACCGGGCCGGCCCTGGGCGGCCTGCTCGTTGGCCGCCTGGGGCCCGACTACCCCTACTTGGGGCCCAAC GTCCTCGCCGCCGCCATGCTGGCCACCAGCGTCGCCGCCGTCGCCCTCTGGTTCGACGAGACGCTCGATGACCAG TCCGGCCCGGGCCCCTGGAAGCCGCGCTGGATTGCTCGCCTGTCCGCCTGGCTACGCCGCCGAGGAAACCCGAGG GCTCATCGGAACTCATGGAGCTCGCGTTGGCCGTACCGTCAGGCTGCCGGCAACAACAACGATGGCAATGACAAC AACCAGCAGCAGCAACAGCGGCGGCCCTTGCTCGCGCCTGAGGCCGCCTCCGTCGCCGACGACGACTATGACGAC TACGACGACGACGACGACGAAGACACCGACGACAGCCACAGTCCCTCCGACGCGCACGGCCACGCCGCCTCCGCC GCCTCCAAGGCAGGGCCTGATGAAGAGCGGCCGCCGGTCTGGCGCGACCTCCTCAACGGTACCACCATCACCCTG CTCACCACCTACCTCGTCTTTCAGCTGTCCAACATCAGCTTCAACAGCCTGTACCCCATCTTCGCCTCGGCGCCC GCCCCGACCGGCCGCGAGCTGAGCCCCGGCCGGATCGGCGTCAGCCTAAGCCTGGCCGGCCTGGCCACCATCATC TTCCAGGCCTTCCTCTACCAGCCGCTCAAGGCCAGGACCGGTAGTCTGGGCGCCTACCGCCTGTCCCTGCTAGGT ATCGCCGTCAGCATGGCCCTCATCCCCTGGGTCGGCTATCTAGACGACGACCCGCCCCTGGGCCTCGGCACCGGC CGCCTCTGGCTCTACCTTGAGCTCGGCATCGTGCTCGTCCTCAAGAACATCTGCGCCGTCAGCGGTCTGTCCAGC GTTATGCTCCTGGTACGTTCAATCCCGCTCTGTGCCCCCGACCCCCGACCCCCGCCCCTACCTTCACGGCAACGA TCGCCGCGCCACGAGACGTATGTGCGGCTGACGCGCTTTTCAGATCACCAACTCGGCGCCCTCGCACGCAAGCCT CGGGACCCTGAACGGCGTGGCCCAGACGCTCTCAGCCTTGGGTCGCAGCTTTGGGCCCTTCGTCTCCGGTGGCCT CTTCACCCTCTCCATCAACGTGCGGCCCAAGGGTGAAGCCCTCGCCTGGAGCGTCTTCGGCGGCCTGGCCCTCCT CGGCTGGCTCGGCTCCATGTTCATCCGCGGCAACGGCCTGGAGAGCGAGGACTGGGACGACGACGGCGACGGCGA CTACCGCGAGCACGACTCTGTTTGA |