© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2763 |
| Gene name | |
| Location | Contig_168:26319..28176 |
| Strand | + |
| Gene length (bp) | 1857 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 1.4E-18 | 86 | 220 |
| PF08031 | BBE | Berberine and berberine like | 7.5E-06 | 468 | 511 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 51 | 509 | 7.0E-21 |
| sp|O06997|YVDP_BACSU | Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 | 52 | 507 | 7.0E-17 |
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 71 | 506 | 2.0E-16 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 88 | 506 | 2.0E-13 |
| sp|Q796Y5|YGAK_BACSU | Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 | 83 | 511 | 1.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 51 | 509 | 7.0E-21 |
| sp|O06997|YVDP_BACSU | Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 | 52 | 507 | 7.0E-17 |
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 71 | 506 | 2.0E-16 |
| sp|P43485|MCRA_STRLA | Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 | 88 | 506 | 2.0E-13 |
| sp|Q796Y5|YGAK_BACSU | Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 | 83 | 511 | 1.0E-12 |
| sp|D4B1Z7|A2478_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02478 PE=1 SV=1 | 84 | 251 | 4.0E-10 |
| sp|D4B1P2|A2372_ARTBC | Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 | 83 | 256 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1244 | 0.0343 | 0.9569 | 0.1127 | 0.073 | 0.0262 | 0.2211 | 0.2437 | 0.1179 | 0.014 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.998762 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA7 | 2.3E-51 | 72 | 508 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 13 | Decorating |
| Orthofinder run ID | 4 |
| Orthogroup | 322 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2763 MPAVSRLVALGLACCSAVVSGSPLPESAIPGYFRREPFTRRDLSPVQAQRELGKALSNGTSIFGPSDPRFKGATA RWNSYDAPDIQLVIEVARESDVSLVVKYCNDNSIDFLAYSRGHGSTSTLAKMKGIEINLSKLNAITIRPGGKSAL FQGGTYGKLVIETLWDKGYVTTTGSNGCVGLLGPGLGGGYGRYQGLYGLISDNFITLNVVLADGRAVKVSKSSHE DLFWAMQGAGHNYGIVTSAELKIHPRKIDTWHYHNYAWSQDQLETVFEALNRFQGKGKIPTLMGVNFGQFTLVPS ISKTDPVLNWTFAYAGPADEAEKLLRPFNAIKALSHESGDVPYPQILAVQGTSDNGFMCSPQPYVGSSALLQTYN VTAQRQIYDLFRKQAKEQPELAANARVFYEGYASEATQAVRPDSSAFPHRDEYLVVFFTAVAPGNLRPIARKWGN DVRDLWNAGQPDRRPATYVNYANGEESLESMYGYEPWRLERLRGLKAKYDPHNRFRFYNPIVA* |
| Coding | >Hirsu2|2763 ATGCCCGCCGTCTCTCGACTCGTGGCCCTCGGCCTTGCTTGTTGCTCGGCCGTCGTCTCCGGCAGTCCGCTGCCT GAAAGCGCAATCCCTGGCTATTTCCGCCGAGAACCCTTTACGCGTCGCGATCTCTCGCCCGTCCAGGCCCAGCGG GAGCTGGGCAAGGCCCTGTCCAACGGCACGAGCATCTTTGGGCCTTCAGATCCCAGGTTCAAAGGCGCGACCGCG AGGTGGAACTCGTACGACGCGCCGGACATCCAGCTCGTAATCGAGGTGGCAAGGGAGTCGGACGTCTCGCTGGTT GTCAAGTATTGCAACGACAATAGCATAGACTTCCTTGCCTACTCCAGGGGCCATGGCTCCACGTCTACGCTCGCC AAGATGAAGGGCATCGAAATCAACCTGTCCAAGCTCAACGCCATCACGATCCGGCCCGGCGGCAAGTCGGCCCTG TTCCAGGGCGGCACCTACGGGAAGCTGGTGATAGAAACGCTCTGGGACAAGGGCTACGTGACAACCACCGGTAGC AACGGCTGCGTCGGACTGCTCGGCCCGGGCCTGGGCGGTGGCTACGGACGCTACCAGGGCCTCTACGGCTTGATT AGCGACAACTTCATCACCCTCAACGTCGTCCTGGCCGACGGCCGAGCCGTCAAGGTCAGCAAGTCGAGCCACGAG GACCTCTTCTGGGCCATGCAGGGCGCCGGCCACAACTACGGCATCGTGACCAGCGCCGAGCTCAAGATCCATCCG CGCAAGATCGACACCTGGCACTATCACAACTATGCCTGGAGCCAGGACCAGCTGGAGACGGTCTTTGAGGCCTTG AACCGGTTCCAGGGCAAGGGCAAGATCCCGACCCTGATGGGCGTCAACTTTGGCCAGTTCACGCTGGTGCCGTCC ATCAGCAAGACCGATCCCGTCCTGAACTGGACGTTCGCCTATGCCGGCCCAGCCGACGAGGCGGAGAAGCTGCTG CGCCCCTTCAACGCCATCAAGGCCCTGTCGCACGAGAGTGGCGACGTTCCCTATCCGCAGATCCTCGCCGTCCAG GGGACGTCGGACAACGGCTTCATGTGCTCGCCGCAGCCGTACGTCGGGAGCTCGGCCCTCCTGCAGACGTACAAC GTCACGGCCCAGCGCCAGATCTACGACCTGTTCCGGAAGCAGGCCAAGGAGCAGCCCGAGCTCGCGGCTAACGCC CGCGTCTTCTACGAGGGCTACGCCAGCGAGGCGACGCAGGCGGTCCGCCCCGACTCGTCGGCGTTTCCCCATCGC GACGAGTATCTTGTCGTATTCTTCACCGCCGTGGCCCCCGGCAACCTCCGTCCCATTGCCCGGAAATGGGGCAAC GACGTCCGCGACCTCTGGAATGCCGGTCAGCCCGATCGCCGTCCGGCGACGTACGTCAACTACGCCAACGGCGAA GAGTCGCTCGAGTCCATGTACGGCTACGAGCCGTGGCGGCTGGAGAGGCTGCGCGGCCTGAAGGCCAAGTACGAT CCGCACAACCGATTCCGCTTCTACAACCCCATCGTCGCCTAA |
| Transcript | >Hirsu2|2763 ATGCCCGCCGTCTCTCGACTCGTGGCCCTCGGCCTTGCTTGTTGCTCGGCCGTCGTCTCCGGCAGTCCGCTGCCT GAAAGCGCAATCCCTGGCTATTTCCGCCGAGAACCCTTTACGCGTCGCGATCTCTCGCCCGTCCAGGCCCAGCGG GAGCTGGGCAAGGCCCTGTCCAACGGCACGAGCATCTTTGGGCCTTCAGATCCCAGGTTCAAAGGCGCGACCGCG AGGTGGAACTCGTACGACGCGCCGGACATCCAGCTCGTAATCGAGGTGGCAAGGGAGTCGGACGTCTCGCTGGTT GTCAAGTATTGCAACGACAATAGCATAGACTTCCTTGCCTACTCCAGGGGCCATGGCTCCACGTCTACGCTCGCC AAGATGAAGGGCATCGAAATCAACCTGTCCAAGCTCAACGCCATCACGATCCGGCCCGGCGGCAAGTCGGCCCTG TTCCAGGGCGGCACCTACGGGAAGCTGGTGATAGAAACGCTCTGGGACAAGGGCTACGTGACAACCACCGGTAGC AACGGCTGCGTCGGACTGCTCGGCCCGGGCCTGGGCGGTGGCTACGGACGCTACCAGGGCCTCTACGGCTTGATT AGCGACAACTTCATCACCCTCAACGTCGTCCTGGCCGACGGCCGAGCCGTCAAGGTCAGCAAGTCGAGCCACGAG GACCTCTTCTGGGCCATGCAGGGCGCCGGCCACAACTACGGCATCGTGACCAGCGCCGAGCTCAAGATCCATCCG CGCAAGATCGACACCTGGCACTATCACAACTATGCCTGGAGCCAGGACCAGCTGGAGACGGTCTTTGAGGCCTTG AACCGGTTCCAGGGCAAGGGCAAGATCCCGACCCTGATGGGCGTCAACTTTGGCCAGTTCACGCTGGTGCCGTCC ATCAGCAAGACCGATCCCGTCCTGAACTGGACGTTCGCCTATGCCGGCCCAGCCGACGAGGCGGAGAAGCTGCTG CGCCCCTTCAACGCCATCAAGGCCCTGTCGCACGAGAGTGGCGACGTTCCCTATCCGCAGATCCTCGCCGTCCAG GGGACGTCGGACAACGGCTTCATGTGCTCGCCGCAGCCGTACGTCGGGAGCTCGGCCCTCCTGCAGACGTACAAC GTCACGGCCCAGCGCCAGATCTACGACCTGTTCCGGAAGCAGGCCAAGGAGCAGCCCGAGCTCGCGGCTAACGCC CGCGTCTTCTACGAGGGCTACGCCAGCGAGGCGACGCAGGCGGTCCGCCCCGACTCGTCGGCGTTTCCCCATCGC GACGAGTATCTTGTCGTATTCTTCACCGCCGTGGCCCCCGGCAACCTCCGTCCCATTGCCCGGAAATGGGGCAAC GACGTCCGCGACCTCTGGAATGCCGGTCAGCCCGATCGCCGTCCGGCGACGTACGTCAACTACGCCAACGGCGAA GAGTCGCTCGAGTCCATGTACGGCTACGAGCCGTGGCGGCTGGAGAGGCTGCGCGGCCTGAAGGCCAAGTACGAT CCGCACAACCGATTCCGCTTCTACAACCCCATCGTCGCCTAA |
| Gene | >Hirsu2|2763 ATGCCCGCCGTCTCTCGACTCGTGGCCCTCGGCCTTGCTTGTTGCTCGGCCGTCGTCTCCGGCAGTCCGCTGCCT GAAAGCGCAATCCCTGGCTATTTCCGCCGAGAACCCTTTACGCGTCGCGATCTCTCGCCCGTCCAGGCCCAGCGG GAGCTGGGCAAGGCCCTGTCCAACGGCACGAGCATCTTTGGGCCTTCAGATCCCAGGTTCAAAGGCGCGACCGCG AGGTGGAACTCGTACGACGCGCCGGACATCCAGCTCGTAATCGAGGTGGCAAGGGAGTCGGACGTCTCGCTGGTT GTACGTTGCTGGGCCGTCTGGCCTCTCCAACCGCCAGGCCTTCCACGGCCAGCTGACTCAAGACGCGCTCCCGCA GGTCAAGTATTGCAACGACAATAGCATAGACTTCCTTGCCTACTCCAGGGGCCATGGCTCCACGTCTACGCTCGC CAAGATGAAGGGCATCGAAATCAACCTGTCCAAGCTCAACGCCATCACGATCCGGCCCGGCGGCAAGTCGGCCCT GTTCCAGGGCGGCACCTACGGGAAGCTGGTGATAGAAACGCTCTGGGACAAGGGCTACGTGACAAGTGAGTGTGC CCGGAGTGCGCTTTCTCGGGGCCAACGTCTAACGACGTGTGCTCCCCTCCCAATCAGCCACCGGTAGCAACGGCT GCGTCGGACTGCTCGGCCCGGGCCTGGGCGGTGGCTACGGACGCTACCAGGGCCTCTACGGCTTGATTAGCGACA ACTTCATCACCCTCAACGTCGTCCTGGCCGACGGCCGAGCCGTCAAGGTCAGCAAGTCGAGCCACGAGGACCTCT TCTGGGCCATGCAGGGCGCCGGCCACAACTACGGCATCGTGACCAGCGCCGAGCTCAAGATCCATCCGCGCAAGA TCGACACCTGGCACTATCACAACTATGCCTGGAGCCAGGACCAGCTGGAGACGGTCTTTGAGGCCTTGAACCGGT TCCAGGGCAAGGGCAAGATCCCGACCCTGATGGGCGTCAACTTTGGCCAGTTCACGCTGGTGCCGTCCATCAGCA AGACCGATGTTCGTCGCCCCCTCCCCCCAACCCAACAAGGGAATCCTATTGGACCCCGAGGCTCGCAATAGAGGC CGGGCAGTTGCAAGAAAGGCGCCGTTGTCTAACTTGGTGTAGCCCGTCCTGAACTGGACGTTCGCCTATGCCGGC CCAGCCGACGAGGCGGAGAAGCTGCTGCGCCCCTTCAACGCCATCAAGGCCCTGTCGCACGAGAGTGGCGACGTT CCCTATCCGCAGATCCTCGCCGTCCAGGGGACGTCGGACAACGGCTTCATGTGCTCGCCGCAGCCGTACGTCGGG AGCTCGGCCCTCCTGCAGACGTACAACGTCACGGCCCAGCGCCAGATCTACGACCTGTTCCGGAAGCAGGCCAAG GAGCAGCCCGAGCTCGCGGCTAACGCCCGCGTCTTCTACGAGGGCTACGCCAGCGAGGCGACGCAGGCGGTCCGC CCCGACTCGTCGGCGTTTCCCCATCGCGACGAGTATCTTGTCGTGTACGTCTGATCCCATTCTCAGGAGGCGAGG AGAGGAGGCGACTGACGAGAGCCCGCGTGCAGATTCTTCACCGCCGTGGCCCCCGGCAACCTCCGTCCCATTGCC CGGAAATGGGGCAACGACGTCCGCGACCTCTGGAATGCCGGTCAGCCCGATCGCCGTCCGGCGACGTACGTCAAC TACGCCAACGGCGAAGAGTCGCTCGAGTCCATGTACGGCTACGAGCCGTGGCGGCTGGAGAGGCTGCGCGGCCTG AAGGCCAAGTACGATCCGCACAACCGATTCCGCTTCTACAACCCCATCGTCGCCTAA |