Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2759
Gene name
LocationContig_168:20065..21379
Strand-
Gene length (bp)1314
Transcript length (bp)1002
Coding sequence length (bp)1002
Protein length (aa) 334

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08031 BBE Berberine and berberine like 3.9E-10 287 326

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 13 329 2.0E-15
sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 2 71 1.0E-10
sp|P43485|MCRA_STRLA Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 18 149 8.0E-10
sp|Q54H55|Y8969_DICDI FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 18 322 1.0E-09
sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 18 329 3.0E-09
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Swissprot ID Swissprot Description Start End E-value
sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 13 329 2.0E-15
sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 2 71 1.0E-10
sp|P43485|MCRA_STRLA Mitomycin radical oxidase OS=Streptomyces lavendulae GN=mcrA PE=1 SV=2 18 149 8.0E-10
sp|Q54H55|Y8969_DICDI FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 18 322 1.0E-09
sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 18 329 3.0E-09
sp|D4B1Z7|A2478_ARTBC Uncharacterized FAD-linked oxidoreductase ARB_02478 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02478 PE=1 SV=1 3 70 6.0E-09
sp|D4B1P2|A2372_ARTBC Uncharacterized FAD-linked oxidoreductase ARB_02372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02372 PE=1 SV=1 13 101 3.0E-08
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GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0055114 oxidation-reduction process Yes
GO:0050660 flavin adenine dinucleotide binding Yes
GO:1901265 nucleoside phosphate binding No
GO:0050662 coenzyme binding No
GO:0005488 binding No
GO:0003824 catalytic activity No
GO:0043168 anion binding No
GO:0003674 molecular_function No
GO:0097159 organic cyclic compound binding No
GO:0043167 ion binding No
GO:0000166 nucleotide binding No
GO:0036094 small molecule binding No
GO:0008150 biological_process No
GO:0048037 cofactor binding No
GO:1901363 heterocyclic compound binding No
GO:0008152 metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 33 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2759
MIGVTLGGGVGRLQGTHGLLLDALVSVRLVTAKGKLVEASASSNPDLFWAIRGAGANFGVVTSATYKLHPLINGG
SILNADLYYPANKSLAYFKAVEAFGDNLPPRLASITFATWNSSINSIQVAANWVYYGPRAEGLKLLQPLLDLKPT
AAVISDVRYNRLAATAGDNFDAIVCQPKAIRSLYGINQKKYSAAAYQRAFDKMAGFFRDHPGGRNSALSFEFFPN
QASGAVPADETAYPWRDATGYLVPNFSWDAGDDATATAAGKLGLELRQELARTSGYDGITVFVNYARGDEGVENI
YGRDKLPRLVRLKKAWDPDNVFAYYHPLPTDYS*
Coding >Hirsu2|2759
ATGATCGGCGTCACCCTCGGCGGCGGCGTCGGACGCCTCCAGGGGACGCACGGCCTGCTGCTCGACGCCCTCGTC
TCCGTCCGCCTCGTCACGGCCAAGGGGAAGCTGGTCGAGGCGTCGGCGAGCTCCAACCCGGATCTGTTCTGGGCC
ATACGCGGCGCGGGCGCCAACTTCGGCGTCGTCACGTCCGCCACATACAAACTCCATCCCCTGATCAACGGCGGG
AGCATCCTGAACGCCGACCTGTACTATCCGGCCAACAAGAGCCTGGCGTACTTCAAGGCCGTCGAGGCCTTCGGA
GACAACCTGCCGCCGCGGCTGGCCTCGATCACGTTCGCCACCTGGAACTCGTCCATCAACTCGATCCAAGTCGCA
GCCAACTGGGTCTACTACGGGCCGAGGGCCGAGGGCCTGAAGCTCCTGCAGCCCTTGCTCGACCTCAAGCCCACC
GCGGCCGTCATCAGCGACGTCCGGTACAACAGGCTCGCGGCCACGGCCGGCGACAACTTCGACGCCATCGTCTGC
CAGCCGAAGGCGATCCGCAGCCTGTACGGCATCAACCAGAAGAAGTACTCGGCCGCCGCCTACCAGAGGGCGTTT
GACAAGATGGCCGGCTTCTTCCGCGACCATCCGGGCGGCCGCAACAGCGCCCTCTCCTTCGAGTTCTTCCCCAAC
CAGGCCTCCGGCGCCGTGCCGGCCGACGAGACGGCCTACCCCTGGCGCGATGCGACAGGATACTTAGTCCCCAAC
TTCTCGTGGGACGCAGGCGACGATGCCACGGCCACGGCCGCGGGCAAGCTCGGGCTGGAGCTCCGCCAAGAGCTC
GCCCGCACGTCCGGATACGACGGCATCACCGTCTTCGTCAACTACGCCCGCGGCGACGAGGGCGTCGAGAACATC
TACGGACGCGACAAGCTGCCCCGTCTGGTCAGGCTGAAGAAGGCCTGGGACCCGGACAACGTCTTCGCCTACTAC
CACCCGCTGCCTACCGACTACAGCTGA
Transcript >Hirsu2|2759
ATGATCGGCGTCACCCTCGGCGGCGGCGTCGGACGCCTCCAGGGGACGCACGGCCTGCTGCTCGACGCCCTCGTC
TCCGTCCGCCTCGTCACGGCCAAGGGGAAGCTGGTCGAGGCGTCGGCGAGCTCCAACCCGGATCTGTTCTGGGCC
ATACGCGGCGCGGGCGCCAACTTCGGCGTCGTCACGTCCGCCACATACAAACTCCATCCCCTGATCAACGGCGGG
AGCATCCTGAACGCCGACCTGTACTATCCGGCCAACAAGAGCCTGGCGTACTTCAAGGCCGTCGAGGCCTTCGGA
GACAACCTGCCGCCGCGGCTGGCCTCGATCACGTTCGCCACCTGGAACTCGTCCATCAACTCGATCCAAGTCGCA
GCCAACTGGGTCTACTACGGGCCGAGGGCCGAGGGCCTGAAGCTCCTGCAGCCCTTGCTCGACCTCAAGCCCACC
GCGGCCGTCATCAGCGACGTCCGGTACAACAGGCTCGCGGCCACGGCCGGCGACAACTTCGACGCCATCGTCTGC
CAGCCGAAGGCGATCCGCAGCCTGTACGGCATCAACCAGAAGAAGTACTCGGCCGCCGCCTACCAGAGGGCGTTT
GACAAGATGGCCGGCTTCTTCCGCGACCATCCGGGCGGCCGCAACAGCGCCCTCTCCTTCGAGTTCTTCCCCAAC
CAGGCCTCCGGCGCCGTGCCGGCCGACGAGACGGCCTACCCCTGGCGCGATGCGACAGGATACTTAGTCCCCAAC
TTCTCGTGGGACGCAGGCGACGATGCCACGGCCACGGCCGCGGGCAAGCTCGGGCTGGAGCTCCGCCAAGAGCTC
GCCCGCACGTCCGGATACGACGGCATCACCGTCTTCGTCAACTACGCCCGCGGCGACGAGGGCGTCGAGAACATC
TACGGACGCGACAAGCTGCCCCGTCTGGTCAGGCTGAAGAAGGCCTGGGACCCGGACAACGTCTTCGCCTACTAC
CACCCGCTGCCTACCGACTACAGCTGA
Gene >Hirsu2|2759
ATGATCGGCGTCACCCTCGGCGGCGGCGTCGGACGCCTCCAGGTGCGTCTCCTCCCCTTCAACGGCCCGGTGTTG
TCCGAAGAAGCAAGCACGTAGCCGCTGCTTGTCTCCCCGTTCCGCACGGCATAGAGCTGACCGCAAGAGCCGCAG
GGGACGCACGGCCTGCTGCTCGACGCCCTCGTCTCCGTCCGCCTCGTCACGGCCAAGGGGAAGCTGGTCGAGGCG
TCGGCGAGCTCCAACCCGGATCTGTTCTGGGCCATACGCGGCGCGGGCGCCAACTTCGGCGTCGTCACGTCCGCC
ACATACAAACTCCATCCCCTGATCAACGGCGGGAGCATCCTGAACGCCGACCTGTACTATCCGGCCAACAAGAGC
CTGGCGTACTTCAAGGCCGTCGAGGCCTTCGGAGACAACCTGCCGCCGCGGCTGGCCTCGATCACGTTCGCCACC
TGGAACTCGTCCATCAACTCGGTATGTTTGTCCCTTCCTCCCCGGCCTTCAACAACGTCAATGGCTCCTTCGAAG
CGTTGACCATGTCTTGCTTCTCCTCCTCTCCCCCTTTCCAGATCCAAGTCGCAGCCAACTGGGTCTACTACGGGC
CGAGGGCCGAGGGCCTGAAGCTCCTGCAGCCCTTGCTCGACCTCAAGCCCACCGCGGCCGTCATCAGCGACGTCC
GGTACAACAGGCTCGCGGCCACGGCCGGCGACAACTTCGACGCCATCGTCTGCCAGCCGAAGGCGATCCGCAGCC
TGTACGGCATCAACCAGAAGAAGTACTCGGCCGCCGCCTACCAGAGGGCGTTTGACAAGATGGCCGGCTTCTTCC
GCGACCATCCGGGCGGCCGCAACAGCGCCCTCTCCTTCGAGTTCTTCCCCAACCAGGCCTCCGGCGCCGTGCCGG
CCGACGAGACGGCCTACCCCTGGCGCGATGCGACAGGATACTTGTGAGGATGACGCCCTCTTGCCCCCCTCCCAA
AGCCCAAGCCTCTCCCGCGGCCTTCCCAGCACGCCTCCGTCGATGGTGTATGCACGCGCTGACAGCGACCCGGGC
AGAGTCCCCAACTTCTCGTGGGACGCAGGCGACGATGCCACGGCCACGGCCGCGGGCAAGCTCGGGCTGGAGCTC
CGCCAAGAGCTCGCCCGCACGTCCGGATACGACGGCATCACCGTCTTCGTCAACTACGCCCGCGGCGACGAGGGC
GTCGAGAACATCTACGGACGCGACAAGCTGCCCCGTCTGGTCAGGCTGAAGAAGGCCTGGGACCCGGACAACGTC
TTCGCCTACTACCACCCGCTGCCTACCGACTACAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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