© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2749 |
| Gene name | |
| Location | Contig_1679:1853..3229 |
| Strand | - |
| Gene length (bp) | 1376 |
| Transcript length (bp) | 1242 |
| Coding sequence length (bp) | 1242 |
| Protein length (aa) | 414 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10483 | Elong_Iki1 | Elongator subunit Iki1 | 1.1E-95 | 84 | 399 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94495|ELP5_SCHPO | Elongator complex protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iki1 PE=3 SV=1 | 81 | 385 | 7.0E-25 |
| sp|P38874|ELP5_YEAST | Elongator complex protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IKI1 PE=1 SV=1 | 72 | 397 | 8.0E-25 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0002098 | tRNA wobble uridine modification | Yes |
| GO:0033588 | elongator holoenzyme complex | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0006400 | tRNA modification | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043412 | macromolecule modification | No |
| GO:0009451 | RNA modification | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0008033 | tRNA processing | No |
| GO:0002097 | tRNA wobble base modification | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2749 LGAPNFTPHSTSPAITIIIIIIIIIIIGILHLCAFPRIAKEKTTTEISARDNKQHAADDGKGPAGPMAPGKASDS HARSHSLILLQRLLNLRDGASPLTLILDDLEQTARPVLGEILARAKLSRRKVIFVSFATLGKPRHVDVFVKAAGR DFKTVRNELMAHYPVLDPMQSRQGKGKTATTQQRAAVIIDSLNSLATAEPASLAASLSSILTPSVSLVGVYHADV PIVLPRSFNEYEPPALAMLCYLATAVLRLSSLPQEMERQKARDRALVEPEWGLREGREGAIVGLRPRMPGDDGRG VVIDMELRRRSGRPVTEKFILTPGAPGKMALLTDHAMFARPEPTEAAAGGDGDVEDGPRSTFDLGLTDKQRRDRE GVVLPYFDAQTDIGGGEGGRILYDMGREDDFDDEDDED* |
| Coding | >Hirsu2|2749 CTGGGGGCACCGAATTTTACGCCTCACTCAACCTCGCCCGCCATCACCATCATCATCATCATCATCATCATCATC ATCATCGGAATACTACACCTCTGCGCATTTCCTCGTATCGCCAAGGAGAAAACTACGACGGAGATCAGCGCGCGC GACAACAAACAGCACGCGGCGGATGACGGCAAAGGGCCGGCAGGTCCCATGGCGCCAGGCAAGGCGTCGGATTCC CACGCCCGCTCTCACAGCCTGATCCTGCTGCAAAGGCTGCTGAACCTCCGCGACGGCGCCAGCCCGCTGACGCTG ATACTCGACGACCTCGAGCAGACGGCTCGTCCAGTCTTGGGCGAGATTCTCGCCCGCGCAAAGCTATCCAGGCGA AAGGTGATATTCGTCTCCTTTGCCACGCTCGGGAAGCCTCGCCATGTCGACGTCTTCGTCAAGGCGGCCGGGAGG GACTTCAAAACGGTGAGGAACGAGCTGATGGCCCATTACCCAGTCCTGGATCCGATGCAGAGTCGGCAGGGCAAG GGCAAGACGGCGACGACGCAGCAAAGGGCCGCGGTCATTATTGACTCGCTGAACAGCCTGGCGACGGCCGAACCG GCGTCCCTGGCCGCATCGCTCTCGAGCATCCTGACGCCGTCGGTCTCGCTCGTGGGCGTCTACCACGCTGACGTG CCCATCGTCCTGCCGCGCAGCTTCAACGAGTACGAGCCGCCGGCGCTGGCGATGCTCTGCTACCTCGCCACCGCC GTCCTTCGCCTCTCCAGTCTGCCGCAGGAGATGGAGCGGCAGAAGGCGCGCGACCGGGCCCTGGTCGAGCCCGAG TGGGGGCTGAGGGAAGGCCGCGAGGGCGCCATCGTCGGCCTCCGACCGCGCATGCCCGGCGACGACGGCCGCGGC GTCGTCATCGACATGGAGCTGCGGCGCCGCAGCGGCCGCCCCGTGACCGAGAAGTTCATCCTGACGCCGGGCGCC CCGGGCAAGATGGCGCTACTGACCGACCACGCCATGTTCGCCCGGCCCGAGCCGACCGAGGCTGCGGCGGGCGGA GACGGCGACGTTGAAGACGGGCCGCGCAGCACCTTCGACCTCGGCCTCACGGACAAGCAGCGGCGCGACAGGGAG GGCGTCGTGCTGCCTTACTTTGATGCCCAGACGGACATTGGCGGCGGCGAGGGCGGCAGGATCCTGTACGACATG GGGCGTGAGGACGACTTTGATGACGAGGACGACGAGGACTGA |
| Transcript | >Hirsu2|2749 CTGGGGGCACCGAATTTTACGCCTCACTCAACCTCGCCCGCCATCACCATCATCATCATCATCATCATCATCATC ATCATCGGAATACTACACCTCTGCGCATTTCCTCGTATCGCCAAGGAGAAAACTACGACGGAGATCAGCGCGCGC GACAACAAACAGCACGCGGCGGATGACGGCAAAGGGCCGGCAGGTCCCATGGCGCCAGGCAAGGCGTCGGATTCC CACGCCCGCTCTCACAGCCTGATCCTGCTGCAAAGGCTGCTGAACCTCCGCGACGGCGCCAGCCCGCTGACGCTG ATACTCGACGACCTCGAGCAGACGGCTCGTCCAGTCTTGGGCGAGATTCTCGCCCGCGCAAAGCTATCCAGGCGA AAGGTGATATTCGTCTCCTTTGCCACGCTCGGGAAGCCTCGCCATGTCGACGTCTTCGTCAAGGCGGCCGGGAGG GACTTCAAAACGGTGAGGAACGAGCTGATGGCCCATTACCCAGTCCTGGATCCGATGCAGAGTCGGCAGGGCAAG GGCAAGACGGCGACGACGCAGCAAAGGGCCGCGGTCATTATTGACTCGCTGAACAGCCTGGCGACGGCCGAACCG GCGTCCCTGGCCGCATCGCTCTCGAGCATCCTGACGCCGTCGGTCTCGCTCGTGGGCGTCTACCACGCTGACGTG CCCATCGTCCTGCCGCGCAGCTTCAACGAGTACGAGCCGCCGGCGCTGGCGATGCTCTGCTACCTCGCCACCGCC GTCCTTCGCCTCTCCAGTCTGCCGCAGGAGATGGAGCGGCAGAAGGCGCGCGACCGGGCCCTGGTCGAGCCCGAG TGGGGGCTGAGGGAAGGCCGCGAGGGCGCCATCGTCGGCCTCCGACCGCGCATGCCCGGCGACGACGGCCGCGGC GTCGTCATCGACATGGAGCTGCGGCGCCGCAGCGGCCGCCCCGTGACCGAGAAGTTCATCCTGACGCCGGGCGCC CCGGGCAAGATGGCGCTACTGACCGACCACGCCATGTTCGCCCGGCCCGAGCCGACCGAGGCTGCGGCGGGCGGA GACGGCGACGTTGAAGACGGGCCGCGCAGCACCTTCGACCTCGGCCTCACGGACAAGCAGCGGCGCGACAGGGAG GGCGTCGTGCTGCCTTACTTTGATGCCCAGACGGACATTGGCGGCGGCGAGGGCGGCAGGATCCTGTACGACATG GGGCGTGAGGACGACTTTGATGACGAGGACGACGAGGACTGA |
| Gene | >Hirsu2|2749 CTGGGGGCACCGAATTTTACGCCTCACTCAACCTCGCCCGCCATCACCATCATCATCATCATCATCATCATCATC ATCATCGGAATACTACACCTCTGCGCATTTCCTCGTATCGCCAAGGAGAAAACTACGACGGAGATCAGCGCGCGC GACAACAAACAGCACGCGGCGGATGACGGCAAAGGGCCGGCAGGTCCCATGGCGCCAGGCAAGGCGTCGGATTCC CACGCCCGCTCTCACAGCCTGATCCTGCTGCAAAGGCTGCTGAACCTCCGCGACGGCGCCAGCCCGCTGACGCTG ATACTCGACGACCTCGAGCAGACGGCTCGTCCAGTCTTGGGCGAGATTCTCGCCCGCGCAAAGGTGCGCCGACAT TTCGATCCGAGGAGAGAGAGATGCTAAACGGTTCTGGCCGCAGCTATCCAGGCGAAAGGTGATATTCGTCTCCTT TGCCACGCTCGGGAAGCCTCGCCATGTCGACGTCTTCGTCAAGGCGGCCGGGAGGGACTTCAAAACGGTGAGGAA CGAGCTGATGGCCCATTACCCAGTCCTGGATCCGATGCAGAGTCGGCAGGGCAAGGGCAAGACGGCGACGACGCA GCAAAGTAGCCCCCCCCCCCCCGTCCGTGTGCCCGGATATAGGGCGGCTTGCCGGACCGGCCGGAAGCTGACCTG CGTTGGCAGGGGCCGCGGTCATTATTGACTCGCTGAACAGCCTGGCGACGGCCGAACCGGCGTCCCTGGCCGCAT CGCTCTCGAGCATCCTGACGCCGTCGGTCTCGCTCGTGGGCGTCTACCACGCTGACGTGCCCATCGTCCTGCCGC GCAGCTTCAACGAGTACGAGCCGCCGGCGCTGGCGATGCTCTGCTACCTCGCCACCGCCGTCCTTCGCCTCTCCA GTCTGCCGCAGGAGATGGAGCGGCAGAAGGCGCGCGACCGGGCCCTGGTCGAGCCCGAGTGGGGGCTGAGGGAAG GCCGCGAGGGCGCCATCGTCGGCCTCCGACCGCGCATGCCCGGCGACGACGGCCGCGGCGTCGTCATCGACATGG AGCTGCGGCGCCGCAGCGGCCGCCCCGTGACCGAGAAGTTCATCCTGACGCCGGGCGCCCCGGGCAAGATGGCGC TACTGACCGACCACGCCATGTTCGCCCGGCCCGAGCCGACCGAGGCTGCGGCGGGCGGAGACGGCGACGTTGAAG ACGGGCCGCGCAGCACCTTCGACCTCGGCCTCACGGACAAGCAGCGGCGCGACAGGGAGGGCGTCGTGCTGCCTT ACTTTGATGCCCAGACGGACATTGGCGGCGGCGAGGGCGGCAGGATCCTGTACGACATGGGGCGTGAGGACGACT TTGATGACGAGGACGACGAGGACTGA |