© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2726 |
| Gene name | |
| Location | Contig_167:10894..12005 |
| Strand | + |
| Gene length (bp) | 1111 |
| Transcript length (bp) | 1044 |
| Coding sequence length (bp) | 1044 |
| Protein length (aa) | 348 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.6E-23 | 61 | 340 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6J7|YHD3_SCHPO | Uncharacterized MFS-type transporter C1683.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.03c PE=3 SV=1 | 86 | 335 | 9.0E-11 |
| sp|P9WG87|Y1250_MYCTU | Uncharacterized MFS-type transporter Rv1250 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1250 PE=3 SV=1 | 61 | 266 | 3.0E-08 |
| sp|P9WG86|Y1250_MYCTO | Uncharacterized MFS-type transporter MT1289 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1289 PE=3 SV=1 | 61 | 266 | 3.0E-08 |
| sp|P42670|PUR8_STRAD | Puromycin resistance protein pur8 OS=Streptomyces alboniger GN=pur8 PE=3 SV=1 | 67 | 257 | 7.0E-07 |
| sp|P9WJY5|EFPA_MYCTU | Uncharacterized MFS-type transporter EfpA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=efpA PE=1 SV=1 | 33 | 258 | 2.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6J7|YHD3_SCHPO | Uncharacterized MFS-type transporter C1683.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.03c PE=3 SV=1 | 86 | 335 | 9.0E-11 |
| sp|P9WG87|Y1250_MYCTU | Uncharacterized MFS-type transporter Rv1250 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1250 PE=3 SV=1 | 61 | 266 | 3.0E-08 |
| sp|P9WG86|Y1250_MYCTO | Uncharacterized MFS-type transporter MT1289 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1289 PE=3 SV=1 | 61 | 266 | 3.0E-08 |
| sp|P42670|PUR8_STRAD | Puromycin resistance protein pur8 OS=Streptomyces alboniger GN=pur8 PE=3 SV=1 | 67 | 257 | 7.0E-07 |
| sp|P9WJY5|EFPA_MYCTU | Uncharacterized MFS-type transporter EfpA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=efpA PE=1 SV=1 | 33 | 258 | 2.0E-06 |
| sp|P9WJY4|EFPA_MYCTO | Uncharacterized MFS-type transporter EfpA OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=efpA PE=3 SV=1 | 33 | 258 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 90 | 112 | 22 |
| 3 | 119 | 138 | 19 |
| 4 | 144 | 166 | 22 |
| 5 | 179 | 201 | 22 |
| 6 | 211 | 230 | 19 |
| 7 | 251 | 273 | 22 |
| 8 | 283 | 302 | 19 |
| 9 | 315 | 337 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2726 MAANQTLVITPRTGSGPGTDSSIPLTYLENTSRTPSSENDSLASEVPRLQKTILVIQLSGVTFFCSVINGLVIIG LPAISKDLELPSSLAFWPASVSGLATASSLLLTGSVTDAVGPRWVGSVGSFACGGLTIGAGVSRKGTELVAMRAL QGVGLSLHLASSVALVTQVFPQGKSRNLAFSFLGLSQPFGFSVGLVLGGVLVDTVGWRVGWYISGASMLLLSFVG LWAFPKGQDKRSFKEIVQDMKSKVDWVGAMLASSFMALLCYLLAVLSTDVYRIKEPGSITLLCLSTITLPCFLLW VHRQVCRGKPALIPNSLWRNATFSSICVIIALSFAVINSMELFASLL* |
| Coding | >Hirsu2|2726 ATGGCGGCAAATCAGACTCTCGTGATCACTCCTCGTACGGGCTCCGGACCCGGGACCGACAGCAGCATCCCGCTC ACCTATTTGGAAAACACTAGTCGTACCCCGTCGTCCGAAAATGACTCACTGGCGTCTGAAGTGCCCAGGCTGCAG AAGACTATCCTCGTGATCCAATTGAGCGGCGTCACGTTCTTCTGCAGCGTCATCAATGGTCTCGTCATCATCGGG CTACCCGCTATCTCCAAGGACCTTGAACTGCCGTCGTCGTTGGCGTTTTGGCCCGCGTCAGTTTCCGGCCTCGCC ACGGCCTCGTCGCTGCTGCTTACCGGCTCCGTGACCGACGCGGTGGGGCCCCGCTGGGTCGGCTCCGTCGGATCG TTCGCCTGCGGGGGCCTGACCATTGGGGCCGGCGTTTCAAGGAAGGGCACCGAACTGGTTGCCATGAGAGCTTTG CAGGGGGTTGGCCTCTCGCTGCATCTCGCGTCGTCCGTCGCTCTCGTCACCCAGGTTTTCCCACAAGGGAAGAGT CGCAACTTGGCATTCTCGTTTCTCGGCCTCAGCCAGCCGTTTGGCTTCTCTGTCGGCCTTGTGCTGGGCGGCGTG CTCGTTGACACTGTCGGCTGGCGAGTGGGGTGGTATATCTCTGGTGCCTCGATGCTTCTGCTTTCCTTTGTCGGC TTGTGGGCGTTTCCCAAGGGCCAGGATAAGCGTTCGTTCAAGGAGATCGTGCAGGATATGAAAAGCAAGGTCGAC TGGGTGGGGGCGATGCTTGCCTCTTCCTTCATGGCATTGCTATGCTACCTGCTGGCCGTTCTCAGCACGGATGTT TATCGCATCAAGGAGCCAGGAAGCATTACTTTGCTCTGTTTGAGCACCATCACTTTGCCATGTTTCCTCCTCTGG GTCCACCGCCAGGTCTGTCGCGGGAAACCGGCTCTTATTCCCAACTCACTCTGGCGAAACGCGACTTTCTCCAGC ATCTGTGTGATTATCGCCTTGTCCTTTGCTGTCATCAACTCGATGGAGCTCTTCGCCAGTTTATTGTAA |
| Transcript | >Hirsu2|2726 ATGGCGGCAAATCAGACTCTCGTGATCACTCCTCGTACGGGCTCCGGACCCGGGACCGACAGCAGCATCCCGCTC ACCTATTTGGAAAACACTAGTCGTACCCCGTCGTCCGAAAATGACTCACTGGCGTCTGAAGTGCCCAGGCTGCAG AAGACTATCCTCGTGATCCAATTGAGCGGCGTCACGTTCTTCTGCAGCGTCATCAATGGTCTCGTCATCATCGGG CTACCCGCTATCTCCAAGGACCTTGAACTGCCGTCGTCGTTGGCGTTTTGGCCCGCGTCAGTTTCCGGCCTCGCC ACGGCCTCGTCGCTGCTGCTTACCGGCTCCGTGACCGACGCGGTGGGGCCCCGCTGGGTCGGCTCCGTCGGATCG TTCGCCTGCGGGGGCCTGACCATTGGGGCCGGCGTTTCAAGGAAGGGCACCGAACTGGTTGCCATGAGAGCTTTG CAGGGGGTTGGCCTCTCGCTGCATCTCGCGTCGTCCGTCGCTCTCGTCACCCAGGTTTTCCCACAAGGGAAGAGT CGCAACTTGGCATTCTCGTTTCTCGGCCTCAGCCAGCCGTTTGGCTTCTCTGTCGGCCTTGTGCTGGGCGGCGTG CTCGTTGACACTGTCGGCTGGCGAGTGGGGTGGTATATCTCTGGTGCCTCGATGCTTCTGCTTTCCTTTGTCGGC TTGTGGGCGTTTCCCAAGGGCCAGGATAAGCGTTCGTTCAAGGAGATCGTGCAGGATATGAAAAGCAAGGTCGAC TGGGTGGGGGCGATGCTTGCCTCTTCCTTCATGGCATTGCTATGCTACCTGCTGGCCGTTCTCAGCACGGATGTT TATCGCATCAAGGAGCCAGGAAGCATTACTTTGCTCTGTTTGAGCACCATCACTTTGCCATGTTTCCTCCTCTGG GTCCACCGCCAGGTCTGTCGCGGGAAACCGGCTCTTATTCCCAACTCACTCTGGCGAAACGCGACTTTCTCCAGC ATCTGTGTGATTATCGCCTTGTCCTTTGCTGTCATCAACTCGATGGAGCTCTTCGCCAGTTTATTGTAA |
| Gene | >Hirsu2|2726 ATGGCGGCAAATCAGACTCTCGTGATCACTCCTCGTACGGGCTCCGGACCCGGGACCGACAGCAGCATCCCGCTC ACCTATTTGGAAAACACTAGTCGTACCCCGTCGTCCGAAAATGACTCACTGGCGTCTGAAGTGCCCAGGCTGCAG AAGACTATCCTCGTGATCCAATTGAGCGGCGTCACGTTCTTCTGCAGCGTCATCAATGGTCTCGTCATCATCGGG CTACCCGCTATCTCCAAGGACCTTGAACTGCCGTCGTCGTTGGCGTTTTGGCCCGCGTCAGTTTCCGGCCTCGCC ACGGCCTCGTCGCTGCTGCTTACCGGCTCCGTGACCGACGCGGTGGGGCCCCGCTGGGTCGGCTCCGTCGGATCG TTCGCCTGCGGGGGCCTGACCATTGGGGCCGGCGTTTCAAGGAAGGGCACCGAACTGGTTGCCATGAGAGCTTTG CAGGGGGTTGGCCTCTCGCTGCATCTCGCGTCGTCCGTCGCTCTCGTCACCCAGGTTTTCCCACAAGGGAAGAGT CGCAACTTGGCATTCTCGTTTCTCGGCCTCAGCCAGCCGTTTGGCTTCTCTGTCGGCCTTGTGCTGGGCGGCGTG CTCGTTGACACTGTCGGCTGGCGAGTGGGGTGGTATATCTCTGGTGCCTCGATGCTTCTGCTTTCCTTTGTCGGC TTGTGGGCGTTTCCCAAGGGCCAGGATAAGCGTTCGTTCAAGGAGATCGTGCAGGATATGAAAAGCAAGGTCGAC TGGGTGGGGGCGATGCTTGCCTCTTCCTTCATGGCATTGCTATGCTACCTGCTGGCGTTAGTTGAGCCCCTTCTA CCACTATTCTACATTTATAAACGTTCGGAGGCTTACATACTTGGGCAGCGTTCTCAGCACGGATGTTTATCGCAT CAAGGAGCCAGGAAGCATTACTTTGCTCTGTTTGAGCACCATCACTTTGCCATGTTTCCTCCTCTGGGTCCACCG CCAGGTCTGTCGCGGGAAACCGGCTCTTATTCCCAACTCACTCTGGCGAAACGCGACTTTCTCCAGCATCTGTGT GATTATCGCCTTGTCCTTTGCTGTCATCAACTCGATGGAGCTCTTCGCCAGTTTATTGTAA |