© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2696 |
| Gene name | |
| Location | Contig_1656:527..1954 |
| Strand | - |
| Gene length (bp) | 1427 |
| Transcript length (bp) | 1269 |
| Coding sequence length (bp) | 1269 |
| Protein length (aa) | 423 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06728 | PIG-U | GPI transamidase subunit PIG-U | 4.1E-128 | 13 | 387 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9H490|PIGU_HUMAN | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3 | 26 | 407 | 4.0E-75 |
| sp|Q8CHJ1|PIGU_RAT | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3 | 26 | 407 | 2.0E-74 |
| sp|Q8K358|PIGU_MOUSE | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=1 SV=4 | 26 | 407 | 3.0E-74 |
| sp|Q8CHJ0|PIGU_CRIGR | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3 | 26 | 407 | 9.0E-74 |
| sp|P41733|CDC91_YEAST | GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1 | 12 | 422 | 1.0E-60 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9H490|PIGU_HUMAN | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3 | 26 | 407 | 4.0E-75 |
| sp|Q8CHJ1|PIGU_RAT | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3 | 26 | 407 | 2.0E-74 |
| sp|Q8K358|PIGU_MOUSE | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=1 SV=4 | 26 | 407 | 3.0E-74 |
| sp|Q8CHJ0|PIGU_CRIGR | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3 | 26 | 407 | 9.0E-74 |
| sp|P41733|CDC91_YEAST | GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1 | 12 | 422 | 1.0E-60 |
| sp|O13883|PIGU_SCHPO | GPI transamidase component GAB1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.01 PE=3 SV=2 | 22 | 422 | 2.0E-55 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0475 | 0.2912 | 0.0358 | 0.1168 | 0.094 | 0.0207 | 0.8525 | 0.1349 | 0.2293 | 0.0022 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 24 | 17 |
| 2 | 85 | 107 | 22 |
| 3 | 128 | 150 | 22 |
| 4 | 179 | 201 | 22 |
| 5 | 222 | 244 | 22 |
| 6 | 277 | 299 | 22 |
| 7 | 306 | 325 | 19 |
| 8 | 349 | 371 | 22 |
| 9 | 378 | 395 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 5047 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2696 MTLRGKAGVYAGAALLRLVLTLAFPGLPDLLTGRVEISTPVTSFKRLQEGLFLYNHNVSPYDGGVYHQAPLLLPL FSLLPDVKHWPIFTSLLYIAVDLLCADALASIADSGEAGQSRLFASPRRARRASGLLVAAAFLFNPFTIATCIGR STSVFTSCAILHAIARAVRSSPFKAMVALSFASYLSMYPLLLAPPLILLALDRQPEKQRQRMGGGQFAARCGATM AACLGALLGMSFVLTGRSWEFLARTYGIQLTLSDLTPNVGLWWYFFIEMFDSFRAFFLAVFWLHLSSYVGGLSIR LRSQPLVVLTLLLGIFAIFKPYPSISDTSLFLAMLPLFWHIFPLMRYSFVASATILYATFLGPAFYYLWIYAGSG NANFFYAITLVWSLGQSLLVSDLAFAVIRDEWEVERPDMVGKDVKQI* |
| Coding | >Hirsu2|2696 ATGACGCTGCGAGGCAAAGCCGGCGTCTACGCCGGCGCGGCCCTGTTGCGGCTCGTTCTGACCCTGGCCTTCCCG GGCCTGCCCGACCTACTGACCGGCCGGGTCGAGATCTCAACGCCTGTCACAAGCTTCAAGCGATTGCAGGAAGGC CTGTTTCTCTACAACCACAATGTCTCGCCCTACGACGGCGGCGTCTATCACCAGGCGCCCCTGCTCCTCCCGCTG TTCTCGCTCCTCCCCGACGTCAAGCATTGGCCCATCTTCACCTCGCTGCTCTACATTGCGGTGGATTTGCTCTGC GCCGATGCTCTGGCTAGTATCGCCGACTCGGGCGAGGCCGGCCAGTCGAGGCTGTTCGCATCGCCCCGGCGAGCT AGACGCGCATCGGGGCTGCTGGTGGCCGCGGCGTTCCTCTTCAACCCGTTTACGATTGCGACGTGCATCGGACGC TCGACCAGCGTCTTCACGTCCTGCGCCATACTGCACGCCATCGCGAGAGCCGTGCGCAGCTCCCCCTTCAAGGCG ATGGTGGCCCTCTCCTTCGCCTCGTACCTGTCCATGTACCCGCTGCTCCTGGCCCCGCCGCTCATCCTGCTGGCG TTGGACCGGCAGCCGGAGAAGCAGCGGCAGCGGATGGGCGGCGGCCAGTTCGCGGCGCGGTGCGGCGCGACGATG GCGGCCTGCCTGGGCGCGCTGCTCGGCATGTCGTTCGTGCTGACGGGTCGGTCGTGGGAGTTCCTGGCGCGGACG TACGGCATCCAGCTGACGCTGTCGGACCTGACGCCCAACGTCGGGCTGTGGTGGTACTTCTTTATCGAGATGTTC GACTCCTTCCGCGCCTTCTTCCTCGCCGTCTTCTGGCTGCACCTGTCGTCGTACGTGGGCGGGCTCAGCATCCGG CTGCGCAGCCAGCCGCTCGTGGTGCTGACGCTGCTGCTCGGCATCTTCGCCATCTTCAAGCCGTACCCGTCCATC TCGGACACGAGCCTCTTCCTCGCCATGCTGCCGCTCTTCTGGCACATCTTCCCCCTCATGCGCTACTCCTTCGTC GCCTCCGCCACCATCCTCTACGCCACCTTCCTCGGCCCGGCCTTCTACTACCTGTGGATCTACGCCGGCAGCGGC AACGCAAACTTCTTCTACGCCATCACCCTCGTCTGGAGCCTGGGCCAGAGCCTGCTCGTCTCCGACCTGGCCTTT GCCGTCATCAGGGACGAGTGGGAGGTGGAGCGGCCGGACATGGTCGGCAAGGACGTCAAGCAGATATAG |
| Transcript | >Hirsu2|2696 ATGACGCTGCGAGGCAAAGCCGGCGTCTACGCCGGCGCGGCCCTGTTGCGGCTCGTTCTGACCCTGGCCTTCCCG GGCCTGCCCGACCTACTGACCGGCCGGGTCGAGATCTCAACGCCTGTCACAAGCTTCAAGCGATTGCAGGAAGGC CTGTTTCTCTACAACCACAATGTCTCGCCCTACGACGGCGGCGTCTATCACCAGGCGCCCCTGCTCCTCCCGCTG TTCTCGCTCCTCCCCGACGTCAAGCATTGGCCCATCTTCACCTCGCTGCTCTACATTGCGGTGGATTTGCTCTGC GCCGATGCTCTGGCTAGTATCGCCGACTCGGGCGAGGCCGGCCAGTCGAGGCTGTTCGCATCGCCCCGGCGAGCT AGACGCGCATCGGGGCTGCTGGTGGCCGCGGCGTTCCTCTTCAACCCGTTTACGATTGCGACGTGCATCGGACGC TCGACCAGCGTCTTCACGTCCTGCGCCATACTGCACGCCATCGCGAGAGCCGTGCGCAGCTCCCCCTTCAAGGCG ATGGTGGCCCTCTCCTTCGCCTCGTACCTGTCCATGTACCCGCTGCTCCTGGCCCCGCCGCTCATCCTGCTGGCG TTGGACCGGCAGCCGGAGAAGCAGCGGCAGCGGATGGGCGGCGGCCAGTTCGCGGCGCGGTGCGGCGCGACGATG GCGGCCTGCCTGGGCGCGCTGCTCGGCATGTCGTTCGTGCTGACGGGTCGGTCGTGGGAGTTCCTGGCGCGGACG TACGGCATCCAGCTGACGCTGTCGGACCTGACGCCCAACGTCGGGCTGTGGTGGTACTTCTTTATCGAGATGTTC GACTCCTTCCGCGCCTTCTTCCTCGCCGTCTTCTGGCTGCACCTGTCGTCGTACGTGGGCGGGCTCAGCATCCGG CTGCGCAGCCAGCCGCTCGTGGTGCTGACGCTGCTGCTCGGCATCTTCGCCATCTTCAAGCCGTACCCGTCCATC TCGGACACGAGCCTCTTCCTCGCCATGCTGCCGCTCTTCTGGCACATCTTCCCCCTCATGCGCTACTCCTTCGTC GCCTCCGCCACCATCCTCTACGCCACCTTCCTCGGCCCGGCCTTCTACTACCTGTGGATCTACGCCGGCAGCGGC AACGCAAACTTCTTCTACGCCATCACCCTCGTCTGGAGCCTGGGCCAGAGCCTGCTCGTCTCCGACCTGGCCTTT GCCGTCATCAGGGACGAGTGGGAGGTGGAGCGGCCGGACATGGTCGGCAAGGACGTCAAGCAGATATAG |
| Gene | >Hirsu2|2696 ATGACGCTGCGAGGCAAAGCCGGCGTCTACGCCGGCGCGGCCCTGTTGCGGCTCGTTCTGACCCTGGCCTTCCCG GGCCTGCCCGACCTACTGACCGGCCGGGTCGAGATCTCAACGCCTGTCACAAGCTTCAAGCGATGTGAGCTTGCT CCGTCCGCTCGCTCTATTTCTCTCGTCCTCCACCCGGCAAGATTCGAGTTGGATCACAGTTGCTGACGAGCTCGG CGCCAAAACGCAGTGCAGGAAGGCCTGTTTCTCTACAACCACAATGTCTCGCCCTACGACGGCGGCGTCTATCAC CAGGCGCCCCTGCTCCTCCCGCTGTTCTCGCTCCTCCCCGACGTCAAGCATTGGCCCATCTTCACCTCGCTGCTC TACATTGCGGTGGATTTGCTCTGCGCCGATGCTCTGGCTAGTATCGCCGACTCGGGCGAGGCCGGCCAGTCGAGG CTGTTCGCATCGCCCCGGCGAGCTAGACGCGCATCGGGGCTGCTGGTGGCCGCGGCGTGAGTTTTTTTTCTTTTC TTTTCCTTTATAGTCGGACCCTTCCTGACAAGCAAAGCAGGTTCCTCTTCAACCCGTTTACGATTGCGACGTGCA TCGGACGCTCGACCAGCGTCTTCACGTCCTGCGCCATACTGCACGCCATCGCGAGAGCCGTGCGCAGCTCCCCCT TCAAGGCGATGGTGGCCCTCTCCTTCGCCTCGTACCTGTCCATGTACCCGCTGCTCCTGGCCCCGCCGCTCATCC TGCTGGCGTTGGACCGGCAGCCGGAGAAGCAGCGGCAGCGGATGGGCGGCGGCCAGTTCGCGGCGCGGTGCGGCG CGACGATGGCGGCCTGCCTGGGCGCGCTGCTCGGCATGTCGTTCGTGCTGACGGGTCGGTCGTGGGAGTTCCTGG CGCGGACGTACGGCATCCAGCTGACGCTGTCGGACCTGACGCCCAACGTCGGGCTGTGGTGGTACTTCTTTATCG AGATGTTCGACTCCTTCCGCGCCTTCTTCCTCGCCGTCTTCTGGCTGCACCTGTCGTCGTACGTGGGCGGGCTCA GCATCCGGCTGCGCAGCCAGCCGCTCGTGGTGCTGACGCTGCTGCTCGGCATCTTCGCCATCTTCAAGCCGTACC CGTCCATCTCGGACACGAGCCTCTTCCTCGCCATGCTGCCGCTCTTCTGGCACATCTTCCCCCTCATGCGCTACT CCTTCGTCGCCTCCGCCACCATCCTCTACGCCACCTTCCTCGGCCCGGCCTTCTACTACCTGTGGATCTACGCCG GCAGCGGCAACGCAAACTTCTTCTACGCCATCACCCTCGTCTGGAGCCTGGGCCAGAGCCTGCTCGTCTCCGACC TGGCCTTTGCCGTCATCAGGGACGAGTGGGAGGTGGAGCGGCCGGACATGGTCGGCAAGGACGTCAAGCAGATAT AG |