© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2692 |
| Gene name | |
| Location | Contig_1654:646..2155 |
| Strand | - |
| Gene length (bp) | 1509 |
| Transcript length (bp) | 1458 |
| Coding sequence length (bp) | 1458 |
| Protein length (aa) | 486 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16782 | SIL1 | Nucleotide exchange factor SIL1 | 1.4E-10 | 144 | 319 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6BTV5|SIL1_DEBHA | Nucleotide exchange factor SIL1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SIL1 PE=3 SV=2 | 40 | 313 | 9.0E-28 |
| sp|Q5A360|SIL1_CANAL | Nucleotide exchange factor SIL1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SIL1 PE=3 SV=1 | 14 | 231 | 1.0E-19 |
| sp|Q99158|SIL1_YARLI | Nucleotide exchange factor SIL1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SIL1 PE=1 SV=2 | 52 | 287 | 8.0E-16 |
| sp|Q758U2|SIL1_ASHGO | Nucleotide exchange factor SIL1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SIL1 PE=3 SV=1 | 41 | 294 | 4.0E-13 |
| sp|Q08199|SIL1_YEAST | Nucleotide exchange factor SIL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIL1 PE=1 SV=1 | 27 | 243 | 9.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6BTV5|SIL1_DEBHA | Nucleotide exchange factor SIL1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SIL1 PE=3 SV=2 | 40 | 313 | 9.0E-28 |
| sp|Q5A360|SIL1_CANAL | Nucleotide exchange factor SIL1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SIL1 PE=3 SV=1 | 14 | 231 | 1.0E-19 |
| sp|Q99158|SIL1_YARLI | Nucleotide exchange factor SIL1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SIL1 PE=1 SV=2 | 52 | 287 | 8.0E-16 |
| sp|Q758U2|SIL1_ASHGO | Nucleotide exchange factor SIL1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SIL1 PE=3 SV=1 | 41 | 294 | 4.0E-13 |
| sp|Q08199|SIL1_YEAST | Nucleotide exchange factor SIL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIL1 PE=1 SV=1 | 27 | 243 | 9.0E-11 |
| sp|Q9VBV5|SIL1_DROME | Nucleotide exchange factor SIL1 OS=Drosophila melanogaster GN=CG10420 PE=2 SV=1 | 57 | 107 | 6.0E-07 |
| sp|Q6NUA7|SIL1_XENLA | Nucleotide exchange factor SIL1 OS=Xenopus laevis GN=sil1 PE=2 SV=1 | 10 | 91 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005783 | endoplasmic reticulum | Yes |
| GO:0000774 | adenyl-nucleotide exchange factor activity | Yes |
| GO:0098772 | molecular function regulator activity | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| GO:0005488 | binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043229 | intracellular organelle | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0060590 | ATPase regulator activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0017076 | purine nucleotide binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.2109 | 0.1835 | 0.3416 | 0.2045 | 0.1852 | 0.0556 | 0.7564 | 0.5224 | 0.563 | 0.077 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 32 | 0.999764 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 453 | 475 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5046 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2692 MGQGRSNISSSPILRAIVLALFLSFSVTSASAAPPQSPPGEVICSPSDPQDCYPRTFHPTDKFQVVREGQDIPPG LHVRLNITTGLKEAKINVPGESDSSLNGLPIDGSLVVSPQPDDDGQQTPKGAPAYDPVGKIKKPQQESESFTAAT KMLREGNLRHNHAVDESLDGLDELSHDMYYGLKIAEDTEVVRALFCLMVSQHVPVSTGSFIPRDLRAASILVGTL SNNPPARNKVADAWPELRDGHCPKSDLTLGQALFDSLVPTGSKDAADVKKSAASIKAIVPVVNDLLKNDKMRAEF LAQGGMERLLQVLVLEGHEWAGAQRKVGQLALDNFLDADMGAKLGQWPTAPSLDDRQCRSAGRSPPDGCWDHHVA RIAEANKHQQGHWSTDLHDKLSAARKASGSGQAPGSPYDSGMAHSSDAESSEEAKDQPDGAGETQHKLSGPGPSP YYFFYLLLVVTVGVCVLHTLGFSVLGAFRRLLSRR* |
| Coding | >Hirsu2|2692 ATGGGCCAGGGCCGGTCAAACATCAGCTCCTCACCCATCTTGCGGGCCATCGTCTTGGCCCTCTTTCTCTCCTTC TCCGTCACATCAGCCTCGGCCGCACCTCCTCAGAGCCCCCCCGGAGAAGTCATCTGTTCTCCTTCGGACCCCCAA GACTGCTATCCCCGGACCTTCCATCCAACGGACAAGTTCCAGGTCGTGCGCGAGGGCCAAGACATCCCCCCCGGA TTGCACGTGCGGCTCAACATCACGACGGGCCTGAAGGAGGCCAAGATCAACGTCCCCGGCGAGTCGGACTCGTCC CTCAACGGCCTGCCCATCGACGGGTCGCTTGTTGTTTCCCCCCAGCCGGATGACGACGGCCAACAGACGCCCAAG GGCGCGCCGGCATACGACCCCGTCGGCAAGATCAAGAAGCCCCAGCAGGAATCCGAGTCCTTCACGGCAGCCACG AAGATGCTTCGCGAAGGCAACCTTCGCCACAACCATGCCGTCGACGAGTCTCTCGACGGCCTCGACGAGCTCTCT CACGACATGTACTACGGCTTGAAGATCGCCGAGGACACCGAGGTCGTCCGCGCCCTCTTCTGCCTCATGGTCAGT CAACACGTGCCCGTGAGCACCGGTAGCTTCATCCCCCGTGACCTGCGCGCCGCCTCCATCCTCGTCGGCACCCTC TCCAACAACCCCCCGGCCCGGAACAAGGTGGCCGACGCCTGGCCCGAGCTGAGGGACGGCCACTGCCCCAAGAGC GACCTGACGCTCGGCCAGGCCTTGTTCGACAGCCTCGTCCCGACCGGGAGCAAAGATGCGGCCGACGTCAAGAAG TCGGCCGCGTCCATCAAGGCCATAGTCCCGGTCGTCAACGACCTCCTCAAGAACGACAAGATGCGGGCCGAATTC CTCGCCCAGGGCGGCATGGAGCGGCTCCTCCAGGTCTTGGTCCTCGAGGGGCACGAGTGGGCCGGCGCGCAGCGC AAGGTCGGACAGCTCGCCCTCGACAACTTCCTCGACGCCGACATGGGCGCCAAACTGGGACAGTGGCCCACGGCG CCGAGTCTGGACGACAGGCAATGCCGGTCGGCCGGGCGCAGCCCCCCGGACGGCTGCTGGGACCACCACGTCGCC AGGATCGCCGAGGCCAACAAGCACCAGCAGGGCCACTGGAGCACCGACCTGCACGACAAGCTGTCGGCGGCGCGC AAGGCTTCCGGCTCCGGCCAGGCCCCCGGCAGCCCCTACGACTCGGGCATGGCTCACAGCAGCGACGCCGAGTCC AGCGAGGAAGCCAAGGACCAACCCGACGGCGCTGGCGAGACGCAGCACAAGCTTTCCGGCCCTGGGCCGTCGCCG TATTACTTCTTTTACCTTTTGCTGGTCGTGACCGTCGGCGTTTGCGTGCTGCATACCTTGGGGTTTTCGGTGTTG GGCGCATTCCGCCGCCTGCTGTCGCGTCGTTGA |
| Transcript | >Hirsu2|2692 ATGGGCCAGGGCCGGTCAAACATCAGCTCCTCACCCATCTTGCGGGCCATCGTCTTGGCCCTCTTTCTCTCCTTC TCCGTCACATCAGCCTCGGCCGCACCTCCTCAGAGCCCCCCCGGAGAAGTCATCTGTTCTCCTTCGGACCCCCAA GACTGCTATCCCCGGACCTTCCATCCAACGGACAAGTTCCAGGTCGTGCGCGAGGGCCAAGACATCCCCCCCGGA TTGCACGTGCGGCTCAACATCACGACGGGCCTGAAGGAGGCCAAGATCAACGTCCCCGGCGAGTCGGACTCGTCC CTCAACGGCCTGCCCATCGACGGGTCGCTTGTTGTTTCCCCCCAGCCGGATGACGACGGCCAACAGACGCCCAAG GGCGCGCCGGCATACGACCCCGTCGGCAAGATCAAGAAGCCCCAGCAGGAATCCGAGTCCTTCACGGCAGCCACG AAGATGCTTCGCGAAGGCAACCTTCGCCACAACCATGCCGTCGACGAGTCTCTCGACGGCCTCGACGAGCTCTCT CACGACATGTACTACGGCTTGAAGATCGCCGAGGACACCGAGGTCGTCCGCGCCCTCTTCTGCCTCATGGTCAGT CAACACGTGCCCGTGAGCACCGGTAGCTTCATCCCCCGTGACCTGCGCGCCGCCTCCATCCTCGTCGGCACCCTC TCCAACAACCCCCCGGCCCGGAACAAGGTGGCCGACGCCTGGCCCGAGCTGAGGGACGGCCACTGCCCCAAGAGC GACCTGACGCTCGGCCAGGCCTTGTTCGACAGCCTCGTCCCGACCGGGAGCAAAGATGCGGCCGACGTCAAGAAG TCGGCCGCGTCCATCAAGGCCATAGTCCCGGTCGTCAACGACCTCCTCAAGAACGACAAGATGCGGGCCGAATTC CTCGCCCAGGGCGGCATGGAGCGGCTCCTCCAGGTCTTGGTCCTCGAGGGGCACGAGTGGGCCGGCGCGCAGCGC AAGGTCGGACAGCTCGCCCTCGACAACTTCCTCGACGCCGACATGGGCGCCAAACTGGGACAGTGGCCCACGGCG CCGAGTCTGGACGACAGGCAATGCCGGTCGGCCGGGCGCAGCCCCCCGGACGGCTGCTGGGACCACCACGTCGCC AGGATCGCCGAGGCCAACAAGCACCAGCAGGGCCACTGGAGCACCGACCTGCACGACAAGCTGTCGGCGGCGCGC AAGGCTTCCGGCTCCGGCCAGGCCCCCGGCAGCCCCTACGACTCGGGCATGGCTCACAGCAGCGACGCCGAGTCC AGCGAGGAAGCCAAGGACCAACCCGACGGCGCTGGCGAGACGCAGCACAAGCTTTCCGGCCCTGGGCCGTCGCCG TATTACTTCTTTTACCTTTTGCTGGTCGTGACCGTCGGCGTTTGCGTGCTGCATACCTTGGGGTTTTCGGTGTTG GGCGCATTCCGCCGCCTGCTGTCGCGTCGTTGA |
| Gene | >Hirsu2|2692 ATGGGCCAGGGCCGGTCAAACATCAGCTCCTCACCCATCTTGCGGGCCATCGTCTTGGCCCTCTTTCTCTCCTTC TCCGTCACATCAGCCTCGGCCGCACCTCCTCAGAGCCCCCCCGGAGAAGTCATCTGTTCTCCTTCGGACCCCCAA GACTGCTATCCCCGGACCTTCCATCCAACGGACAAGTTCCAGGTCGTGCGCGAGGGCCAAGACATCCCCCCCGGA TTGCACGTGCGGCTCAACATCACGACGGGCCTGAAGGAGGCCAAGATCAACGTCCCCGGCGAGTCGGACTCGTCC CTCAACGGCCTGCCCATCGACGGGTCGCTTGTTGTTTCCCCCCAGCCGGATGACGACGGCCAACAGACGCCCAAG GGCGCGCCGGCATACGACCCCGTCGGCAAGATCAAGAAGCCCCAGCAGGAATCCGAGTCCTTCACGGCAGCCACG AAGATGCTTCGCGAAGGCAACCTTCGCCACAACCATGCCGTCGACGAGTCTCTCGACGGCCTCGACGAGCTCTCT CACGACATGTACTACGGCTTGAAGATCGCCGAGGACACCGAGGTCGTCCGCGCCCTCTTCTGCCTCATGGTCAGT CAACACGTGCCCGTGAGCACCGGTAGCTTCATCCCCCGTGACCTGCGCGCCGCCTCCATCCTCGTCGGCACCCTC TCCAACAACCCCCCGGCCCGGAACAAGGTGGCCGACGCCTGGCCCGAGCTGAGGGACGGCCACTGCCCCAAGAGC GACCTGACGCTCGGCCAGGCCTTGTTCGACAGCCTCGTCCCGACCGGGAGCAAAGATGCGGCCGACGTCAAGAAG TCGGCCGCGTCCATCAAGGCCATAGTCCCGGTCGTCAACGACCTCCTCAAGAACGACAAGATGCGGGCCGAATTC CTCGCCCAGGGCGGCATGGAGCGGCTCCTCCAGGTCTTGGTCCTCGAGGGGCACGAGTGGGCCGGCGCGCAGCGC AAGGTCGGACAGCTCGCCCTCGACAACTTCCTCGACGCCGACATGGGCGCCAAACTGGGACAGTGGCCCACGGCG CCGAGTCTGGACGACAGGCAATGCCGGTCGGCCGGGCGCAGCCCCCCGGACGGCTGCTGGGACCACCACGTCGCC AGGATCGCCGAGGCCAACAAGCACCAGCAGGGCCACTGGAGCACCGACCTGCACGACAAGCTGTCGGCGGCGCGC AAGGCTTCCGGCTCCGGCCAGGCCCCCGGCAGCCCCTACGACTCGGGCATGGCTCACAGCAGCGACGCCGAGTCC AGCGAGGAAGCCAAGGACCAACCCGACGGCGCTGGCGAGACGCAGCACAAGCTTTCCGGCCCTGGTGAGGCTCCG CGCCCCGAACTGTAGAAGAGCATGACTGAGTGCAGCTCAGGGCCGTCGCCGTATTACTTCTTTTACCTTTTGCTG GTCGTGACCGTCGGCGTTTGCGTGCTGCATACCTTGGGGTTTTCGGTGTTGGGCGCATTCCGCCGCCTGCTGTCG CGTCGTTGA |