© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|264 |
| Gene name | |
| Location | Contig_105:3612..5328 |
| Strand | + |
| Gene length (bp) | 1716 |
| Transcript length (bp) | 1413 |
| Coding sequence length (bp) | 1413 |
| Protein length (aa) | 471 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 9.5E-20 | 57 | 422 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 5.5E-10 | 284 | 465 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08280|BSC6_YEAST | Bypass of stop codon protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BSC6 PE=1 SV=1 | 51 | 457 | 1.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 83 | 105 | 22 |
| 3 | 174 | 196 | 22 |
| 4 | 206 | 228 | 22 |
| 5 | 282 | 304 | 22 |
| 6 | 348 | 367 | 19 |
| 7 | 369 | 391 | 22 |
| 8 | 406 | 428 | 22 |
| 9 | 433 | 455 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|264 MTATTTLQPAVEALELDRPTAPEHESAPATGSEPSPPDTGLSRAEAKTRHLQLASVGFSFLVAGVNDGSIGALLP YVLREYRISTAIVSSIYGASFVGWLTAALTSTHLCQHLDLGAVLAVGALCQVAAHALRAWGPPLGLFTASFALAS LGQAFQDTQGNTLVAASKGAAHRWLALIHASYMAGCLVGPFVATAVAASGGRVSRWYLFYAFPLGLGVANLVAVF VAFRGSIRLRRQTAPAVSQSRSLQDGSGSSYAQGREATAGDRSAASLIQATLAMPSVWLLCTFFFFYLGSVLTAS GWVVEYLVDVRHGNLSQMGYVPAGFNGGALLGRLLLAEPTHRFGERNMVLFYTLSAIALQLVFWLVPNIIAASIA VSLIGFFTGPLFATGISLGSKLFPPHLHSTALAFVFVFAQMGGSLFPIVTGLVSARASVTVLQPILTGLLSATAI SWILVPRPKSSPNSGALHQE* |
| Coding | >Hirsu2|264 ATGACGGCCACGACCACGCTTCAACCTGCTGTCGAAGCGCTCGAGCTCGATCGGCCGACGGCCCCGGAGCACGAG TCCGCGCCGGCGACCGGCTCGGAGCCGTCCCCACCCGACACAGGTCTGAGCCGGGCCGAGGCAAAGACCCGTCAT CTGCAGCTGGCCAGCGTCGGCTTCTCCTTCTTGGTGGCAGGCGTCAACGACGGCAGCATCGGCGCGCTGCTCCCT TACGTCCTCCGCGAGTACCGCATCAGCACCGCCATCGTCTCCAGCATTTATGGCGCCAGCTTCGTCGGCTGGCTG ACGGCGGCGTTGACGAGCACGCACCTGTGCCAGCACCTCGATCTCGGCGCCGTGCTGGCCGTCGGCGCGCTCTGC CAGGTCGCCGCGCACGCCCTCCGCGCCTGGGGCCCGCCCCTCGGCCTCTTCACCGCCTCGTTCGCGCTCGCCAGC CTCGGCCAGGCCTTTCAGGACACCCAGGGGAACACCTTGGTGGCGGCCTCCAAGGGCGCGGCTCATCGCTGGCTG GCCCTCATCCACGCCTCCTACATGGCCGGCTGCCTTGTCGGGCCCTTTGTCGCCACGGCCGTTGCCGCCTCTGGC GGCCGTGTCTCTCGCTGGTATCTATTCTACGCTTTCCCCCTGGGCCTGGGTGTCGCAAACTTGGTCGCCGTCTTC GTCGCATTTCGGGGCTCAATCCGGCTGCGGCGCCAGACCGCTCCGGCAGTATCTCAAAGCCGCTCTCTTCAAGAT GGCTCCGGCAGCTCTTACGCACAAGGTAGAGAGGCTACTGCTGGTGACAGAAGTGCCGCCAGCCTCATCCAGGCT ACCCTGGCCATGCCTTCGGTCTGGCTGCTGTGCACCTTTTTCTTCTTCTATCTCGGCTCCGTCTTGACGGCGAGC GGCTGGGTCGTCGAGTATCTCGTCGATGTCCGCCACGGCAACTTATCGCAAATGGGCTATGTGCCGGCCGGCTTC AATGGCGGAGCGCTCCTCGGCAGGCTGCTCCTGGCTGAGCCGACACACCGATTCGGCGAGCGCAACATGGTGCTC TTCTACACGCTTTCTGCCATCGCCCTCCAGCTTGTTTTTTGGCTGGTACCAAACATCATCGCGGCCTCGATTGCC GTCAGTCTCATTGGTTTCTTTACCGGCCCGCTATTCGCTACCGGCATATCTCTCGGCTCCAAGCTTTTCCCGCCG CATCTCCACTCGACCGCCCTGGCCTTCGTCTTTGTCTTCGCTCAGATGGGCGGCTCTTTGTTTCCCATCGTCACG GGTCTGGTCTCGGCGCGTGCCAGTGTCACCGTCCTACAACCCATTCTGACAGGGCTTCTCTCAGCAACGGCAATC AGCTGGATTCTCGTGCCGCGCCCCAAATCGTCGCCGAACTCTGGCGCATTACACCAAGAATAG |
| Transcript | >Hirsu2|264 ATGACGGCCACGACCACGCTTCAACCTGCTGTCGAAGCGCTCGAGCTCGATCGGCCGACGGCCCCGGAGCACGAG TCCGCGCCGGCGACCGGCTCGGAGCCGTCCCCACCCGACACAGGTCTGAGCCGGGCCGAGGCAAAGACCCGTCAT CTGCAGCTGGCCAGCGTCGGCTTCTCCTTCTTGGTGGCAGGCGTCAACGACGGCAGCATCGGCGCGCTGCTCCCT TACGTCCTCCGCGAGTACCGCATCAGCACCGCCATCGTCTCCAGCATTTATGGCGCCAGCTTCGTCGGCTGGCTG ACGGCGGCGTTGACGAGCACGCACCTGTGCCAGCACCTCGATCTCGGCGCCGTGCTGGCCGTCGGCGCGCTCTGC CAGGTCGCCGCGCACGCCCTCCGCGCCTGGGGCCCGCCCCTCGGCCTCTTCACCGCCTCGTTCGCGCTCGCCAGC CTCGGCCAGGCCTTTCAGGACACCCAGGGGAACACCTTGGTGGCGGCCTCCAAGGGCGCGGCTCATCGCTGGCTG GCCCTCATCCACGCCTCCTACATGGCCGGCTGCCTTGTCGGGCCCTTTGTCGCCACGGCCGTTGCCGCCTCTGGC GGCCGTGTCTCTCGCTGGTATCTATTCTACGCTTTCCCCCTGGGCCTGGGTGTCGCAAACTTGGTCGCCGTCTTC GTCGCATTTCGGGGCTCAATCCGGCTGCGGCGCCAGACCGCTCCGGCAGTATCTCAAAGCCGCTCTCTTCAAGAT GGCTCCGGCAGCTCTTACGCACAAGGTAGAGAGGCTACTGCTGGTGACAGAAGTGCCGCCAGCCTCATCCAGGCT ACCCTGGCCATGCCTTCGGTCTGGCTGCTGTGCACCTTTTTCTTCTTCTATCTCGGCTCCGTCTTGACGGCGAGC GGCTGGGTCGTCGAGTATCTCGTCGATGTCCGCCACGGCAACTTATCGCAAATGGGCTATGTGCCGGCCGGCTTC AATGGCGGAGCGCTCCTCGGCAGGCTGCTCCTGGCTGAGCCGACACACCGATTCGGCGAGCGCAACATGGTGCTC TTCTACACGCTTTCTGCCATCGCCCTCCAGCTTGTTTTTTGGCTGGTACCAAACATCATCGCGGCCTCGATTGCC GTCAGTCTCATTGGTTTCTTTACCGGCCCGCTATTCGCTACCGGCATATCTCTCGGCTCCAAGCTTTTCCCGCCG CATCTCCACTCGACCGCCCTGGCCTTCGTCTTTGTCTTCGCTCAGATGGGCGGCTCTTTGTTTCCCATCGTCACG GGTCTGGTCTCGGCGCGTGCCAGTGTCACCGTCCTACAACCCATTCTGACAGGGCTTCTCTCAGCAACGGCAATC AGCTGGATTCTCGTGCCGCGCCCCAAATCGTCGCCGAACTCTGGCGCATTACACCAAGAATAG |
| Gene | >Hirsu2|264 ATGACGGCCACGACCACGCTTCAACCTGCTGTCGAAGCGCTCGAGCTCGATCGGCCGACGGCCCCGGAGCACGAG TCCGCGCCGGCGACCGGCTCGGAGCCGTCCCCACCCGACACAGGTCTGAGCCGGGCCGAGGCAAAGACCCGTCAT CTGCAGCTGGCCAGCGTCGGCTTCTCCTTCTTGGTGGCAGGCGTCAACGACGGCAGCATCGGCGCGCTGCTCCCT TACGTCCTCCGCGAGTACCGCATCAGCACCGCCATCGTCTCCAGCATGTGAGCCTCCTCGAGATCCGAGCTTCAC GTGATCTGCCGCGGCATGATCGTGTGCCGGGAGGCGACTGGGGTTTGACGGATTCTGACACCCGGACCTGGCCGG CAGTTATGGCGCCAGCTTCGTCGGCTGGCTGACGGCGGCGTTGACGAGCACGCACCTGTGCCAGCACCTCGATCT CGGCGCCGTGCTGGCCGTCGGCGCGCTCTGCCAGGTCGCCGCGCACGCCCTCCGCGCCTGGGGCCCGCCCCTCGG CCTCTTCACCGCCTCGTTCGCGCTCGCCAGCCTCGGCCAGGCCTTTCAGGACACCCAGGGGAACACCTTGGTGGC GGCCTCCAAGGGCGCGGCTCATCGCTGGCTGGCCCTCATCCACGCCTCCTACATGGCCGGCTGCCTTGTCGGGCC CTTTGTCGCCACGGCCGTTGCCGCCTCTGGCGGCCGTGTCTCTCGCTGGTATCTATTCTACGCTTTCCCCCTGGG CCTGGGTGTCGCAAACTTGGTCGCCGTCTTCGTCGCATTTCGGGGCTCAATCCGGCTGCGGCGCCAGACCGCTCC GGCAGTATCTCAAAGCCGCTCTCTTCAAGATGGCTCCGGCAGCTCTTACGCACAAGGTAGAGAGGCTACTGCTGG TGACAGAAGTGCCGCCAGCCTCATCCAGGCTACCCTGGCCATGCCTTCGGTCTGGCTGCTGTGCACCTTTTTCTT CTTCTATCTCGGCTCCGTCTTGACGGCGAGCGGCTGGGTCGTCGAGTATCTCGTCGATGTCCGCCACGGCAACTT ATCGCAAATGGGCTATGTGCCGGCCGGCTTCAATGGCGGAGCGCTCCTCGGCAGGCTGCTCCTGGCTGAGCCGAC ACACCGATTCGGCGAGCGCAACATGGTGCTCTTCTACACGCTTTCTGCCATCGCCCTCCAGCTTGTTTTTTGGCT GTAAGTCCCGGACCTAGTCAGCCTTGTCAAGGCCGCCCTTCACCCACGTCGAGCCGCAACAGGATGATCGGCCAC GGGAGCGGATTTCGCTGCTAAACAGTCTGTCTAAACAATAGGGTACCAAACATCATCGCGGCCTCGATTGCCGTC AGTCTCATTGGTTTCTTTACCGGCCCGCTATTCGCTACCGTGAGTCGGTCCGACTTGTCCGCTTCTAGGCTCTCT ATATGCCTCTATTCGCATCCCGTCAACTGATCCGGCGTCATATAGGGCATATCTCTCGGCTCCAAGCTTTTCCCG CCGCATCTCCACTCGACCGCCCTGGCCTTCGTCTTTGTCTTCGCTCAGATGGGCGGCTCTTTGTTTCCCATCGTC ACGGGTCTGGTCTCGGCGCGTGCCAGTGTCACCGTCCTACAACCCATTCTGACAGGGCTTCTCTCAGCAACGGCA ATCAGCTGGATTCTCGTGCCGCGCCCCAAATCGTCGCCGAACTCTGGCGCATTACACCAAGAATAG |