© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|2618 |
| Gene name | |
| Location | Contig_1630:958..1480 |
| Strand | - |
| Gene length (bp) | 522 |
| Transcript length (bp) | 294 |
| Coding sequence length (bp) | 294 |
| Protein length (aa) | 98 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 1.0E-44 | 1 | 82 |
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 1.5E-21 | 22 | 78 |
| PF13639 | zf-RING_2 | Ring finger domain | 6.4E-07 | 34 | 78 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.1E-04 | 24 | 68 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT86|APC11_SCHPO | Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1 | 1 | 93 | 2.0E-30 |
| sp|Q9M9L0|APC11_ARATH | Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2 | 1 | 82 | 7.0E-28 |
| sp|Q9CPX9|APC11_MOUSE | Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=3 SV=1 | 1 | 82 | 7.0E-27 |
| sp|Q5R8A2|APC11_PONAB | Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1 | 1 | 82 | 1.0E-26 |
| sp|Q9NYG5|APC11_HUMAN | Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1 | 1 | 82 | 1.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT86|APC11_SCHPO | Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1 | 1 | 93 | 2.0E-30 |
| sp|Q9M9L0|APC11_ARATH | Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2 | 1 | 82 | 7.0E-28 |
| sp|Q9CPX9|APC11_MOUSE | Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=3 SV=1 | 1 | 82 | 7.0E-27 |
| sp|Q5R8A2|APC11_PONAB | Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1 | 1 | 82 | 1.0E-26 |
| sp|Q9NYG5|APC11_HUMAN | Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1 | 1 | 82 | 1.0E-26 |
| sp|Q3ZCF6|APC11_BOVIN | Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1 | 1 | 82 | 1.0E-26 |
| sp|Q12157|APC11_YEAST | Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1 | 1 | 82 | 9.0E-26 |
| sp|Q54L48|APC11_DICDI | Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1 | 1 | 82 | 1.0E-22 |
| sp|Q20052|APC11_CAEEL | Anaphase-promoting complex subunit 11 OS=Caenorhabditis elegans GN=apc-11 PE=1 SV=1 | 1 | 79 | 9.0E-21 |
| sp|Q9UBF6|RBX2_HUMAN | RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1 | 4 | 86 | 3.0E-13 |
| sp|Q9WTZ1|RBX2_MOUSE | RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=3 SV=1 | 4 | 86 | 4.0E-13 |
| sp|O13959|RBX1_SCHPO | RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pip1 PE=1 SV=2 | 2 | 83 | 2.0E-12 |
| sp|Q08273|RBX1_YEAST | RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRT1 PE=1 SV=1 | 2 | 82 | 4.0E-12 |
| sp|Q54K33|RBX1_DICDI | RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1 | 2 | 83 | 5.0E-12 |
| sp|Q23457|RBX1_CAEEL | RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1 | 2 | 83 | 5.0E-12 |
| sp|Q8QG64|RBX1_SALSA | RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2 | 2 | 83 | 6.0E-12 |
| sp|P62878|RBX1_MOUSE | E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1 | 2 | 83 | 9.0E-12 |
| sp|P62877|RBX1_HUMAN | E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1 | 2 | 83 | 9.0E-12 |
| sp|Q9W5E1|RBX1A_DROME | RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1 | 2 | 76 | 2.0E-11 |
| sp|Q940X7|RBX1A_ARATH | RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1 | 2 | 83 | 3.0E-11 |
| sp|Q9M2B0|RBX1B_ARATH | RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1 | 2 | 76 | 1.0E-10 |
| sp|Q9NHX0|RBX1B_DROME | RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2 | 2 | 86 | 4.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | Yes |
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019787 | ubiquitin-like protein transferase activity | No |
| GO:1902494 | catalytic complex | No |
| GO:0044422 | organelle part | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0043169 | cation binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0005488 | binding | No |
| GO:0044428 | nuclear part | No |
| GO:0044446 | intracellular organelle part | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0044464 | cell part | No |
| GO:0003824 | catalytic activity | No |
| GO:0044424 | intracellular part | No |
| GO:1990234 | transferase complex | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043167 | ion binding | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2618 MKVTIKEWNAVATWRWDIPEDDVCGICQVHFDGTCPTCKYPGDDCSLLSGKCGHNFHMHCIMEWIKQDSARGQCP MCRQPFEWIDQANDTTTTSVTE* |
| Coding | >Hirsu2|2618 ATGAAAGTCACCATCAAGGAATGGAACGCGGTGGCGACCTGGCGATGGGACATCCCGGAGGACGACGTCTGCGGC ATCTGCCAGGTCCACTTCGACGGGACGTGCCCGACGTGCAAATACCCCGGCGACGACTGCAGCCTGCTCTCTGGC AAATGCGGCCACAACTTTCACATGCACTGCATCATGGAATGGATCAAGCAAGACTCGGCCCGCGGCCAGTGCCCC ATGTGTCGACAGCCTTTTGAATGGATCGATCAAGCCAACGACACCACCACCACCTCCGTCACGGAGTGA |
| Transcript | >Hirsu2|2618 ATGAAAGTCACCATCAAGGAATGGAACGCGGTGGCGACCTGGCGATGGGACATCCCGGAGGACGACGTCTGCGGC ATCTGCCAGGTCCACTTCGACGGGACGTGCCCGACGTGCAAATACCCCGGCGACGACTGCAGCCTGCTCTCTGGC AAATGCGGCCACAACTTTCACATGCACTGCATCATGGAATGGATCAAGCAAGACTCGGCCCGCGGCCAGTGCCCC ATGTGTCGACAGCCTTTTGAATGGATCGATCAAGCCAACGACACCACCACCACCTCCGTCACGGAGTGA |
| Gene | >Hirsu2|2618 ATGAAAGTCACCATCAAGGAATGGAACGCGGTGGCGACCTGGCGATGGGACATCCCGGAGGACGACGTCTGCGGC ATCTGCCAGGTCCACTTCGACGGGACGTGCCCGACGTGCAAATACCCCGGCGACGACTGCAGCCTGCGTGAGAAT CTTGGCTTCCCGCCTCCCCGTCTTCACGTGTTTCTCCCCCGGGCCCCTTCGCTGACGCTGCGACTCCCCCAGTCT CTGGCAAATGCGGCCACAACTTTCACATGGTCAGCGCCCCCCCCCCTCCTCTGGCCGGACTCTGCTCGCGCGTCG GGAGGCGAGCGTCGTTGCTGACGTCCCGCCGCAGCACTGCATCATGGAATGGATCAAGCAAGACTCGGCCCGCGG CCAGTGCCCCATGTGTCGACAGCGTACGACGGCTCTCCCCTGTCCTTGTCTGCCTACGAGGGCGGCGCGGCTGAC GTGCGCGGCTGTCTAGCTTTTGAATGGATCGATCAAGCCAACGACACCACCACCACCTCCGTCACGGAGTGA |