Protein ID | Hirsu2|2607 |
Gene name | |
Location | Contig_163:6475..7739 |
Strand | - |
Gene length (bp) | 1264 |
Transcript length (bp) | 1152 |
Coding sequence length (bp) | 1152 |
Protein length (aa) | 384 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16010 | CDH-cyt | Cytochrome domain of cellobiose dehydrogenase | 2.2E-22 | 30 | 180 |
PF03351 | DOMON | DOMON domain | 1.6E-09 | 47 | 127 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Signal peptide | 0.074 | 0.0582 | 0.3405 | 0.4066 | 0.0847 | 0.0076 | 0.3308 | 0.8145 | 0.5173 | 0.0229 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 22 | 0.571467 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 218 | 240 | 22 |
2 | 247 | 264 | 17 |
3 | 274 | 296 | 22 |
4 | 309 | 331 | 22 |
5 | 341 | 363 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 5035 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2607 MRLNHQTAIAAAAALGATGASGASAPFCPESQVCFRWGIPQNAATSARGTVYFQLRAPTEYRWVGLGIGSQMRGA DMFVMYAAGNNNVTLSTRQGQGHTMPQYSARNDVQLMAGSGISNGQMTANVRCTGCDKLDPSGSSDWIAAWLEGS PMNSASPSERIAIHGGYDGFSVDLSKATVQSNQNPFQGGQGGAQVVGGGTTSGGGGGPSLGFAHGVVMAIIFLIG YPVGSMLMPLVGSWLLHASWQMLTFLGMWAGFGIGYVITQRANAFFVGTHVQFGVILCCLMCLQPVFGWFHHRYF VQHQQRGIVSYVHIFYGRSLMALGVINGGLGLKLAGGSGSFVTAYSVIAAIVFVAYILSAVYATFRKRRRVSTET PKLRLQSI* |
Coding | >Hirsu2|2607 ATGAGGCTCAATCACCAGACAGCCATCGCGGCCGCGGCCGCCCTCGGCGCGACCGGGGCCTCTGGCGCATCGGCG CCCTTCTGCCCCGAATCCCAGGTCTGCTTCCGCTGGGGAATTCCGCAAAACGCCGCCACTTCGGCCCGCGGCACC GTCTACTTCCAGCTTCGCGCGCCGACCGAATACCGGTGGGTCGGCCTCGGTATCGGATCCCAGATGCGCGGCGCC GACATGTTCGTCATGTACGCTGCCGGCAACAACAACGTGACGCTCAGCACCAGGCAGGGCCAGGGGCACACCATG CCTCAGTACAGCGCGAGGAACGACGTCCAGCTCATGGCCGGCTCCGGCATCAGCAACGGCCAGATGACGGCCAAC GTTCGCTGCACCGGCTGCGACAAGCTCGACCCATCGGGTTCGTCCGACTGGATAGCCGCTTGGCTCGAGGGTAGC CCAATGAACTCGGCCAGCCCGTCGGAGCGCATCGCCATCCACGGCGGCTATGACGGCTTCTCCGTCGACCTCTCC AAGGCCACTGTCCAGTCCAACCAGAACCCGTTCCAGGGAGGCCAGGGCGGAGCCCAGGTCGTCGGCGGCGGTACC ACCTCTGGCGGTGGCGGAGGGCCGTCTCTGGGATTTGCCCACGGCGTCGTCATGGCCATCATCTTCCTCATCGGA TATCCCGTCGGATCCATGCTGATGCCCCTGGTCGGCAGCTGGCTTCTACACGCCAGCTGGCAAATGCTCACCTTC CTGGGCATGTGGGCGGGCTTCGGTATCGGATATGTCATCACCCAGAGAGCCAATGCTTTCTTCGTCGGTACCCAT GTCCAATTTGGCGTCATCCTCTGCTGCCTCATGTGCCTGCAGCCCGTCTTCGGCTGGTTCCATCACAGATATTTC GTCCAGCATCAGCAGCGCGGCATCGTCAGCTACGTACACATCTTTTACGGCCGTTCTCTCATGGCCCTGGGCGTC ATCAACGGAGGATTGGGCCTGAAGCTCGCCGGCGGCTCCGGCTCCTTCGTCACGGCGTACAGCGTTATAGCTGCC ATCGTTTTCGTGGCATACATCTTGTCTGCCGTGTACGCCACATTCAGGAAGAGGCGCCGGGTTAGCACCGAGACG CCGAAGCTTCGACTGCAGTCCATCTGA |
Transcript | >Hirsu2|2607 ATGAGGCTCAATCACCAGACAGCCATCGCGGCCGCGGCCGCCCTCGGCGCGACCGGGGCCTCTGGCGCATCGGCG CCCTTCTGCCCCGAATCCCAGGTCTGCTTCCGCTGGGGAATTCCGCAAAACGCCGCCACTTCGGCCCGCGGCACC GTCTACTTCCAGCTTCGCGCGCCGACCGAATACCGGTGGGTCGGCCTCGGTATCGGATCCCAGATGCGCGGCGCC GACATGTTCGTCATGTACGCTGCCGGCAACAACAACGTGACGCTCAGCACCAGGCAGGGCCAGGGGCACACCATG CCTCAGTACAGCGCGAGGAACGACGTCCAGCTCATGGCCGGCTCCGGCATCAGCAACGGCCAGATGACGGCCAAC GTTCGCTGCACCGGCTGCGACAAGCTCGACCCATCGGGTTCGTCCGACTGGATAGCCGCTTGGCTCGAGGGTAGC CCAATGAACTCGGCCAGCCCGTCGGAGCGCATCGCCATCCACGGCGGCTATGACGGCTTCTCCGTCGACCTCTCC AAGGCCACTGTCCAGTCCAACCAGAACCCGTTCCAGGGAGGCCAGGGCGGAGCCCAGGTCGTCGGCGGCGGTACC ACCTCTGGCGGTGGCGGAGGGCCGTCTCTGGGATTTGCCCACGGCGTCGTCATGGCCATCATCTTCCTCATCGGA TATCCCGTCGGATCCATGCTGATGCCCCTGGTCGGCAGCTGGCTTCTACACGCCAGCTGGCAAATGCTCACCTTC CTGGGCATGTGGGCGGGCTTCGGTATCGGATATGTCATCACCCAGAGAGCCAATGCTTTCTTCGTCGGTACCCAT GTCCAATTTGGCGTCATCCTCTGCTGCCTCATGTGCCTGCAGCCCGTCTTCGGCTGGTTCCATCACAGATATTTC GTCCAGCATCAGCAGCGCGGCATCGTCAGCTACGTACACATCTTTTACGGCCGTTCTCTCATGGCCCTGGGCGTC ATCAACGGAGGATTGGGCCTGAAGCTCGCCGGCGGCTCCGGCTCCTTCGTCACGGCGTACAGCGTTATAGCTGCC ATCGTTTTCGTGGCATACATCTTGTCTGCCGTGTACGCCACATTCAGGAAGAGGCGCCGGGTTAGCACCGAGACG CCGAAGCTTCGACTGCAGTCCATCTGA |
Gene | >Hirsu2|2607 ATGAGGCTCAATCACCAGACAGCCATCGCGGCCGCGGCCGCCCTCGGTACGGCCACTCGTCAATGTCCTCTCCGT CCTCCGTCCCGCTGACACTCGTCTCTGCCAGGCGCGACCGGGGCCTCTGGCGCATCGGCGCCCTTCTGCCCCGAA TCCCAGGTCTGCTTCCGCTGGGGAATTCCGCAAAACGCCGCCACTTCGGCCCGCGGCACCGTCTACTTCCAGCTT CGCGCGCCGACCGAATACCGGTGGGTCGGCCTCGGTATCGGATCCCAGATGCGCGGCGCCGACATGTTCGTCATG TACGCTGCCGGCAACAACAACGTGACGCTCAGCACCAGGCAGGGCCAGGGGCACACCATGCCTCAGTACAGCGCG AGGAACGACGTCCAGCTCATGGCCGGCTCCGGCATCAGCAACGGCCAGATGACGGCCAACGTTCGCTGCACCGGC TGCGACAAGCTCGACCCATCGGGTTCGTCCGACTGGATAGCCGCTTGGCTCGAGGGTAGCCCAATGAACTCGGCC AGCCCGTCGGAGCGCATCGCCATCCACGGCGGCTATGACGGCTTCTCCGTCGACCTCTCCAAGGCCACTGTCCAG TCCAACCAGAACCCGTTCCAGGGAGGCCAGGGCGGAGCCCAGGTCGTCGGCGGCGGTACCACCTCTGGCGGTGGC GGAGGGCCGTCTCTGGGATTTGCCCACGGCGTCGTCATGGCCATCATCTTCCTCATCGGATATCCCGTCGGATCC ATGCTGATGCCCCTGGTCGGCAGCTGGCTTCTACACGCCAGCTGGCAAATGCTCACCTTCCTGGGCATGTGGGCG GGCTTCGGTATCGGATATGTCATCACCCAGAGAGCCAATGCTGTGAGTGCCCGAGCGGCAGTTGTCGATGGTTTT GGGTGACTGACTGGCACAGTTCTTCGTCGGTACCCATGTCCAATTTGGCGTCATCCTCTGCTGCCTCATGTGCCT GCAGCCCGTCTTCGGCTGGTTCCATCACAGATATTTCGTCCAGCATCAGCAGCGCGGCATCGTCAGCTACGTACA CATCTTTTACGGCCGTTCTCTCATGGCCCTGGGCGTCATCAACGGAGGATTGGGCCTGAAGCTCGCCGGCGGCTC CGGCTCCTTCGTCACGGCGTACAGCGTTATAGCTGCCATCGTTTTCGTGGCATACATCTTGTCTGCCGTGTACGC CACATTCAGGAAGAGGCGCCGGGTTAGCACCGAGACGCCGAAGCTTCGACTGCAGTCCATCTGA |