Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2583
Gene name
LocationContig_162:25216..25808
Strand-
Gene length (bp)592
Transcript length (bp)513
Coding sequence length (bp)513
Protein length (aa) 171

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08287 DASH_Spc19 Spc19 3.0E-48 11 153

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6BHU0|SPC19_DEBHA DASH complex subunit SPC19 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SPC19 PE=3 SV=2 4 156 5.0E-20
sp|Q50HP3|SPC19_SCHPO DASH complex subunit spc19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spc19 PE=1 SV=2 9 160 3.0E-16
sp|Q59QH6|SPC19_CANAL DASH complex subunit SPC19 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPC19 PE=3 SV=1 12 106 1.0E-06

GO

GO Term Description Terminal node
GO:0042729 DASH complex Yes
GO:0008608 attachment of spindle microtubules to kinetochore Yes
GO:0005876 spindle microtubule Yes
GO:0022402 cell cycle process No
GO:0005575 cellular_component No
GO:0044422 organelle part No
GO:0099512 supramolecular fiber No
GO:0008150 biological_process No
GO:0044428 nuclear part No
GO:0000940 condensed chromosome outer kinetochore No
GO:0005874 microtubule No
GO:0099080 supramolecular complex No
GO:0000942 condensed nuclear chromosome outer kinetochore No
GO:0044446 intracellular organelle part No
GO:0044464 cell part No
GO:0044454 nuclear chromosome part No
GO:0044427 chromosomal part No
GO:0044424 intracellular part No
GO:0099081 supramolecular polymer No
GO:0032991 protein-containing complex No
GO:0044430 cytoskeletal part No
GO:0099513 polymeric cytoskeletal fiber No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2583
MAPSSTTASYADCVSSLRTSLQFLQSSVQTLDAGVADFPRLGKVLKTVRHYELVPQPTLAAAEASLRDEIGPYVA
LLLARADAQLERQDRRIETLKARADLQQGRLARPDDDDAAAQQKLPPRNARRLAGEDRLRARALRQRKEALRYGV
ERLELEVLQKERELRKRLDD*
Coding >Hirsu2|2583
ATGGCTCCGTCGTCGACGACGGCCTCGTACGCCGACTGCGTCTCCTCCCTGCGCACCTCGTTGCAGTTCCTCCAG
TCGTCGGTGCAGACGCTCGACGCCGGCGTCGCCGACTTCCCGCGCCTCGGCAAGGTCCTCAAGACCGTTCGCCAC
TACGAGCTCGTGCCGCAGCCGACGCTGGCCGCGGCCGAGGCCTCGCTCCGCGACGAGATCGGGCCCTACGTCGCG
CTGCTGCTGGCCCGCGCCGACGCCCAGCTCGAGCGCCAGGACCGCCGCATCGAGACGCTCAAGGCCAGGGCCGAC
CTGCAGCAGGGCCGGCTCGCGCGGCCCGACGACGACGACGCCGCCGCCCAGCAGAAGCTGCCCCCCCGAAACGCT
CGCAGGCTCGCCGGCGAGGACAGGCTGCGCGCCCGGGCGCTGCGCCAGCGCAAGGAGGCGCTGCGCTACGGCGTC
GAGCGCCTCGAGCTCGAGGTGCTGCAGAAGGAGAGGGAGCTGCGGAAGCGCCTCGACGACTGA
Transcript >Hirsu2|2583
ATGGCTCCGTCGTCGACGACGGCCTCGTACGCCGACTGCGTCTCCTCCCTGCGCACCTCGTTGCAGTTCCTCCAG
TCGTCGGTGCAGACGCTCGACGCCGGCGTCGCCGACTTCCCGCGCCTCGGCAAGGTCCTCAAGACCGTTCGCCAC
TACGAGCTCGTGCCGCAGCCGACGCTGGCCGCGGCCGAGGCCTCGCTCCGCGACGAGATCGGGCCCTACGTCGCG
CTGCTGCTGGCCCGCGCCGACGCCCAGCTCGAGCGCCAGGACCGCCGCATCGAGACGCTCAAGGCCAGGGCCGAC
CTGCAGCAGGGCCGGCTCGCGCGGCCCGACGACGACGACGCCGCCGCCCAGCAGAAGCTGCCCCCCCGAAACGCT
CGCAGGCTCGCCGGCGAGGACAGGCTGCGCGCCCGGGCGCTGCGCCAGCGCAAGGAGGCGCTGCGCTACGGCGTC
GAGCGCCTCGAGCTCGAGGTGCTGCAGAAGGAGAGGGAGCTGCGGAAGCGCCTCGACGACTGA
Gene >Hirsu2|2583
ATGGCTCCGTCGTCGACGACGGCCTCGTACGCCGACTGCGTCTCCTCCCTGCGCACCTCGTTGCAGTTCCTCCAG
TCGTCGGTGCAGACGCTCGACGCCGGCGTCGCCGACTTCCCGCGCCTCGGCAAGGTCCTCAAGACCGTTCGCGTA
CGTCGTCTCCCCCCACCCTCCATGCCGGCCGCGCAGAGCAGAAAGAGCTGAAGAGACGAGAGGGCGGCCCCGGCA
GCACTACGAGCTCGTGCCGCAGCCGACGCTGGCCGCGGCCGAGGCCTCGCTCCGCGACGAGATCGGGCCCTACGT
CGCGCTGCTGCTGGCCCGCGCCGACGCCCAGCTCGAGCGCCAGGACCGCCGCATCGAGACGCTCAAGGCCAGGGC
CGACCTGCAGCAGGGCCGGCTCGCGCGGCCCGACGACGACGACGCCGCCGCCCAGCAGAAGCTGCCCCCCCGAAA
CGCTCGCAGGCTCGCCGGCGAGGACAGGCTGCGCGCCCGGGCGCTGCGCCAGCGCAAGGAGGCGCTGCGCTACGG
CGTCGAGCGCCTCGAGCTCGAGGTGCTGCAGAAGGAGAGGGAGCTGCGGAAGCGCCTCGACGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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