© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2570 |
| Gene name | |
| Location | Contig_1618:803..2441 |
| Strand | - |
| Gene length (bp) | 1638 |
| Transcript length (bp) | 1272 |
| Coding sequence length (bp) | 1272 |
| Protein length (aa) | 424 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14378 | PAP2_3 | PAP2 superfamily | 2.7E-06 | 154 | 212 |
| PF14378 | PAP2_3 | PAP2 superfamily | 4.6E-24 | 228 | 375 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 184 | 206 | 22 |
| 2 | 243 | 260 | 17 |
| 3 | 307 | 329 | 22 |
| 4 | 336 | 354 | 18 |
| 5 | 364 | 386 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2570 MAVGAFLEPLVVVTLLFGGAWFNRSTDVDLWRHEPAWTRKRTDELDKEEADLDDDPLAGSDTWSGSSTPTLAPHE VPALRRRKLCFLGYQRIVSTPNTLLFKDRFLSRVLQKFPFLAEAWYWALIYWVYQVGRALTALSLVEGTVNVARK HALQLIHLEQRLNIFYEVPVQRWFLARPTLMHWINRVYSFIHIPGTIFFLVALFYLTTTRKRMAVAGRVRSDPVA AGPALYEARRRTMAMCNLVAFVVFTLWPCMPPRLLSDPDYRGDYAAEAKSYGFVDTVHGKGGESSVWTTNRFCNQ YAAMPSLHFGYSLLIGLTVATLPISGLRATSWKRAGIVALGMSYPALILTAIVATANHFVLDAVAGALVCAVAWR ANGLLLNLCVVEDYFLWLLRIHKPVNHTDPDTAVEPDSQAGLLLSEDM* |
| Coding | >Hirsu2|2570 ATGGCCGTGGGCGCTTTTCTCGAACCGCTCGTCGTCGTCACCCTGCTCTTCGGCGGCGCTTGGTTCAACCGCAGC ACAGACGTTGACCTGTGGCGCCACGAGCCGGCATGGACGCGCAAGAGGACGGATGAGCTCGACAAGGAGGAGGCC GATCTCGACGACGACCCTCTCGCCGGATCCGACACCTGGAGCGGCAGTTCGACGCCGACGCTCGCCCCCCACGAG GTCCCGGCCCTGCGCCGGCGCAAGCTCTGCTTCCTGGGCTACCAGCGCATCGTCTCGACGCCCAACACGCTCCTC TTCAAGGACCGGTTCCTGAGCCGCGTCCTGCAAAAATTCCCCTTCCTCGCCGAGGCCTGGTATTGGGCCCTGATC TATTGGGTCTACCAGGTCGGACGGGCCCTGACGGCCCTGTCGCTCGTCGAGGGCACCGTCAACGTCGCCCGCAAG CATGCGCTCCAGCTCATCCACCTGGAGCAGCGGCTCAACATCTTTTACGAGGTGCCGGTCCAGCGCTGGTTCCTG GCCCGCCCGACGCTGATGCACTGGATCAACCGCGTCTACTCCTTCATCCACATCCCCGGCACCATCTTCTTCCTC GTCGCCCTCTTCTACCTGACGACGACGCGCAAGCGCATGGCCGTCGCCGGCCGCGTCCGCTCCGACCCCGTCGCC GCGGGGCCCGCCCTGTACGAGGCCCGCCGCCGCACCATGGCCATGTGCAACCTCGTCGCCTTCGTCGTCTTCACC CTGTGGCCCTGCATGCCGCCGCGCCTGCTGAGCGACCCGGACTACAGGGGGGACTACGCGGCCGAGGCCAAGAGT TACGGCTTCGTCGACACCGTCCACGGCAAGGGCGGCGAGAGCAGCGTCTGGACCACGAACCGGTTCTGCAACCAA TACGCTGCCATGCCGTCGCTTCACTTCGGCTACTCCCTGCTGATTGGGCTGACAGTCGCGACGCTACCCATTTCC GGCCTGCGCGCCACGTCGTGGAAGCGGGCCGGGATCGTCGCGCTCGGCATGTCGTATCCGGCCCTGATCCTGACG GCCATCGTGGCGACGGCCAACCACTTCGTGCTCGACGCCGTGGCCGGCGCCCTGGTGTGCGCCGTCGCCTGGCGG GCCAACGGGCTGCTGCTCAACCTGTGCGTGGTCGAGGACTACTTCCTGTGGCTGCTCCGCATCCACAAGCCCGTC AACCACACCGACCCGGACACGGCCGTCGAGCCCGACAGCCAGGCTGGCCTGCTGCTGAGCGAAGACATGTGA |
| Transcript | >Hirsu2|2570 ATGGCCGTGGGCGCTTTTCTCGAACCGCTCGTCGTCGTCACCCTGCTCTTCGGCGGCGCTTGGTTCAACCGCAGC ACAGACGTTGACCTGTGGCGCCACGAGCCGGCATGGACGCGCAAGAGGACGGATGAGCTCGACAAGGAGGAGGCC GATCTCGACGACGACCCTCTCGCCGGATCCGACACCTGGAGCGGCAGTTCGACGCCGACGCTCGCCCCCCACGAG GTCCCGGCCCTGCGCCGGCGCAAGCTCTGCTTCCTGGGCTACCAGCGCATCGTCTCGACGCCCAACACGCTCCTC TTCAAGGACCGGTTCCTGAGCCGCGTCCTGCAAAAATTCCCCTTCCTCGCCGAGGCCTGGTATTGGGCCCTGATC TATTGGGTCTACCAGGTCGGACGGGCCCTGACGGCCCTGTCGCTCGTCGAGGGCACCGTCAACGTCGCCCGCAAG CATGCGCTCCAGCTCATCCACCTGGAGCAGCGGCTCAACATCTTTTACGAGGTGCCGGTCCAGCGCTGGTTCCTG GCCCGCCCGACGCTGATGCACTGGATCAACCGCGTCTACTCCTTCATCCACATCCCCGGCACCATCTTCTTCCTC GTCGCCCTCTTCTACCTGACGACGACGCGCAAGCGCATGGCCGTCGCCGGCCGCGTCCGCTCCGACCCCGTCGCC GCGGGGCCCGCCCTGTACGAGGCCCGCCGCCGCACCATGGCCATGTGCAACCTCGTCGCCTTCGTCGTCTTCACC CTGTGGCCCTGCATGCCGCCGCGCCTGCTGAGCGACCCGGACTACAGGGGGGACTACGCGGCCGAGGCCAAGAGT TACGGCTTCGTCGACACCGTCCACGGCAAGGGCGGCGAGAGCAGCGTCTGGACCACGAACCGGTTCTGCAACCAA TACGCTGCCATGCCGTCGCTTCACTTCGGCTACTCCCTGCTGATTGGGCTGACAGTCGCGACGCTACCCATTTCC GGCCTGCGCGCCACGTCGTGGAAGCGGGCCGGGATCGTCGCGCTCGGCATGTCGTATCCGGCCCTGATCCTGACG GCCATCGTGGCGACGGCCAACCACTTCGTGCTCGACGCCGTGGCCGGCGCCCTGGTGTGCGCCGTCGCCTGGCGG GCCAACGGGCTGCTGCTCAACCTGTGCGTGGTCGAGGACTACTTCCTGTGGCTGCTCCGCATCCACAAGCCCGTC AACCACACCGACCCGGACACGGCCGTCGAGCCCGACAGCCAGGCTGGCCTGCTGCTGAGCGAAGACATGTGA |
| Gene | >Hirsu2|2570 ATGGCCGTGGGCGCTTTTCTCGAACCGCTCGTCGTCGTCACCCTGCTCTTCGGCGGCGCTTGGTTCAACCGCAGC ACAGACGTTGACCTGTGGCGCCACGAGCCGGCATGGACGCGCAAGAGGACGGATGAGCTCGACAAGGAGGAGGCC GATCTCGACGACGACCCTCTCGCCGGATCCGACACCTGGAGCGGCAGTTCGACGCCGACGCTCGCCCCCCACGAG GTCCCGGCCCTGCGCCGGCGCAAGCTCTGCTTCCTGGGCTACCAGCGCATCGTCTCGACGCCCAACACGCTCCTC TTCAAGGACCGGTTCCTGAGCCGCGTCCTGCAAAAATTCCCCTTCCTCGCCGAGGCCTGGTATTGGGCCCTGATC TATTGGGTGAGCTCTCCTCGGTCCGGTCGACGGGCATACCGCTAACGATGGTCCCTCGCGCCAGGTCTACCAGGT CGGACGGGCCCTGACGGCCCTGTCGCTCGTCGAGGGCACCGTCAACGTCGCCCGCAAGCATGCGCTCCAGCTCAT CCACCTGGAGCAGCGGCTCAACATCTTTTACGAGGTGCCGGTCCAGCGCTGGTTCCTGGCCCGCCCGACGCTGAT GCACTGGATCAACCGCGTCTACTCCTTCATCCACATCCCCGGCACCATCTTCTTCCTCGTCGCCCTCTTCTACCT GACGACGACGCGCAAGCGCATGGCCGTCGCCGGCCGCGTCCGCTCCGACCCCGTCGCCGCGGGGCCCGCCCTGTA CGAGGCCCGCCGCCGCACCATGGCCATGTGCAACCTCGTCGCCTTCGTCGTCTTCACCCTGTGGCCCTGCATGCC GCCGCGCCTGCTGAGCGACCCGGACTACAGGGGGGACTACGCGGCCGAGGCCAAGAGTTACGGCTTCGTCGACAC CGTCCACGGCAAGGGCGGCGAGAGCAGCGTCTGGACCACGAACCGGTTCTGCAACCAATACGGTGCGTACACGCC CAATTTCTGTTTTCCTTACCGCCGTTCCCCCTTTTCTTCCACCGCCTCCTTTTGTTGTTCGTTTGTTGCCGCGCG TCTGTTGGGCTTTGGAGTCGCGGCATCGTCCGGCTGGATTTTGCCGAGACACGCCGGGGAGATGCGAGCGATTGT AGTAAGCCCACAAGCAGAGAAGTGGACGGAACAGACGGCACGAGAAAGGGCATTGCCTGGAAAAACACCCGACGA CACCAAAAAAAGAAATAAGATCAAGACGCAAAAAAAAAAAAAAGGTCGAAAGGGGCTAACGATTCAGCAGCTGCC ATGCCGTCGCTTCACTTCGGCTACTCCCTGCTGATTGGGCTGACAGTCGCGACGCTACCCATTTCCGGCCTGCGC GCCACGTCGTGGAAGCGGGCCGGGATCGTCGCGCTCGGCATGTCGTATCCGGCCCTGATCCTGACGGCCATCGTG GCGACGGCCAACCACTTCGTGCTCGACGCCGTGGCCGGCGCCCTGGTGTGCGCCGTCGCCTGGCGGGCCAACGGG CTGCTGCTCAACCTGTGCGTGGTCGAGGACTACTTCCTGTGGCTGCTCCGCATCCACAAGCCCGTCAACCACACC GACCCGGACACGGCCGTCGAGCCCGACAGCCAGGCTGGCCTGCTGCTGAGCGAAGACATGTGA |