Protein ID | Hirsu2|2570 |
Gene name | |
Location | Contig_1618:803..2441 |
Strand | - |
Gene length (bp) | 1638 |
Transcript length (bp) | 1272 |
Coding sequence length (bp) | 1272 |
Protein length (aa) | 424 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14378 | PAP2_3 | PAP2 superfamily | 2.7E-06 | 154 | 212 |
PF14378 | PAP2_3 | PAP2 superfamily | 4.6E-24 | 228 | 375 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.1293 | 0.0546 | 0.1476 | 0.1674 | 0.2294 | 0.0137 | 0.7802 | 0.5003 | 0.735 | 0.0603 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 184 | 206 | 22 |
2 | 243 | 260 | 17 |
3 | 307 | 329 | 22 |
4 | 336 | 354 | 18 |
5 | 364 | 386 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2139 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2570 MAVGAFLEPLVVVTLLFGGAWFNRSTDVDLWRHEPAWTRKRTDELDKEEADLDDDPLAGSDTWSGSSTPTLAPHE VPALRRRKLCFLGYQRIVSTPNTLLFKDRFLSRVLQKFPFLAEAWYWALIYWVYQVGRALTALSLVEGTVNVARK HALQLIHLEQRLNIFYEVPVQRWFLARPTLMHWINRVYSFIHIPGTIFFLVALFYLTTTRKRMAVAGRVRSDPVA AGPALYEARRRTMAMCNLVAFVVFTLWPCMPPRLLSDPDYRGDYAAEAKSYGFVDTVHGKGGESSVWTTNRFCNQ YAAMPSLHFGYSLLIGLTVATLPISGLRATSWKRAGIVALGMSYPALILTAIVATANHFVLDAVAGALVCAVAWR ANGLLLNLCVVEDYFLWLLRIHKPVNHTDPDTAVEPDSQAGLLLSEDM* |
Coding | >Hirsu2|2570 ATGGCCGTGGGCGCTTTTCTCGAACCGCTCGTCGTCGTCACCCTGCTCTTCGGCGGCGCTTGGTTCAACCGCAGC ACAGACGTTGACCTGTGGCGCCACGAGCCGGCATGGACGCGCAAGAGGACGGATGAGCTCGACAAGGAGGAGGCC GATCTCGACGACGACCCTCTCGCCGGATCCGACACCTGGAGCGGCAGTTCGACGCCGACGCTCGCCCCCCACGAG GTCCCGGCCCTGCGCCGGCGCAAGCTCTGCTTCCTGGGCTACCAGCGCATCGTCTCGACGCCCAACACGCTCCTC TTCAAGGACCGGTTCCTGAGCCGCGTCCTGCAAAAATTCCCCTTCCTCGCCGAGGCCTGGTATTGGGCCCTGATC TATTGGGTCTACCAGGTCGGACGGGCCCTGACGGCCCTGTCGCTCGTCGAGGGCACCGTCAACGTCGCCCGCAAG CATGCGCTCCAGCTCATCCACCTGGAGCAGCGGCTCAACATCTTTTACGAGGTGCCGGTCCAGCGCTGGTTCCTG GCCCGCCCGACGCTGATGCACTGGATCAACCGCGTCTACTCCTTCATCCACATCCCCGGCACCATCTTCTTCCTC GTCGCCCTCTTCTACCTGACGACGACGCGCAAGCGCATGGCCGTCGCCGGCCGCGTCCGCTCCGACCCCGTCGCC GCGGGGCCCGCCCTGTACGAGGCCCGCCGCCGCACCATGGCCATGTGCAACCTCGTCGCCTTCGTCGTCTTCACC CTGTGGCCCTGCATGCCGCCGCGCCTGCTGAGCGACCCGGACTACAGGGGGGACTACGCGGCCGAGGCCAAGAGT TACGGCTTCGTCGACACCGTCCACGGCAAGGGCGGCGAGAGCAGCGTCTGGACCACGAACCGGTTCTGCAACCAA TACGCTGCCATGCCGTCGCTTCACTTCGGCTACTCCCTGCTGATTGGGCTGACAGTCGCGACGCTACCCATTTCC GGCCTGCGCGCCACGTCGTGGAAGCGGGCCGGGATCGTCGCGCTCGGCATGTCGTATCCGGCCCTGATCCTGACG GCCATCGTGGCGACGGCCAACCACTTCGTGCTCGACGCCGTGGCCGGCGCCCTGGTGTGCGCCGTCGCCTGGCGG GCCAACGGGCTGCTGCTCAACCTGTGCGTGGTCGAGGACTACTTCCTGTGGCTGCTCCGCATCCACAAGCCCGTC AACCACACCGACCCGGACACGGCCGTCGAGCCCGACAGCCAGGCTGGCCTGCTGCTGAGCGAAGACATGTGA |
Transcript | >Hirsu2|2570 ATGGCCGTGGGCGCTTTTCTCGAACCGCTCGTCGTCGTCACCCTGCTCTTCGGCGGCGCTTGGTTCAACCGCAGC ACAGACGTTGACCTGTGGCGCCACGAGCCGGCATGGACGCGCAAGAGGACGGATGAGCTCGACAAGGAGGAGGCC GATCTCGACGACGACCCTCTCGCCGGATCCGACACCTGGAGCGGCAGTTCGACGCCGACGCTCGCCCCCCACGAG GTCCCGGCCCTGCGCCGGCGCAAGCTCTGCTTCCTGGGCTACCAGCGCATCGTCTCGACGCCCAACACGCTCCTC TTCAAGGACCGGTTCCTGAGCCGCGTCCTGCAAAAATTCCCCTTCCTCGCCGAGGCCTGGTATTGGGCCCTGATC TATTGGGTCTACCAGGTCGGACGGGCCCTGACGGCCCTGTCGCTCGTCGAGGGCACCGTCAACGTCGCCCGCAAG CATGCGCTCCAGCTCATCCACCTGGAGCAGCGGCTCAACATCTTTTACGAGGTGCCGGTCCAGCGCTGGTTCCTG GCCCGCCCGACGCTGATGCACTGGATCAACCGCGTCTACTCCTTCATCCACATCCCCGGCACCATCTTCTTCCTC GTCGCCCTCTTCTACCTGACGACGACGCGCAAGCGCATGGCCGTCGCCGGCCGCGTCCGCTCCGACCCCGTCGCC GCGGGGCCCGCCCTGTACGAGGCCCGCCGCCGCACCATGGCCATGTGCAACCTCGTCGCCTTCGTCGTCTTCACC CTGTGGCCCTGCATGCCGCCGCGCCTGCTGAGCGACCCGGACTACAGGGGGGACTACGCGGCCGAGGCCAAGAGT TACGGCTTCGTCGACACCGTCCACGGCAAGGGCGGCGAGAGCAGCGTCTGGACCACGAACCGGTTCTGCAACCAA TACGCTGCCATGCCGTCGCTTCACTTCGGCTACTCCCTGCTGATTGGGCTGACAGTCGCGACGCTACCCATTTCC GGCCTGCGCGCCACGTCGTGGAAGCGGGCCGGGATCGTCGCGCTCGGCATGTCGTATCCGGCCCTGATCCTGACG GCCATCGTGGCGACGGCCAACCACTTCGTGCTCGACGCCGTGGCCGGCGCCCTGGTGTGCGCCGTCGCCTGGCGG GCCAACGGGCTGCTGCTCAACCTGTGCGTGGTCGAGGACTACTTCCTGTGGCTGCTCCGCATCCACAAGCCCGTC AACCACACCGACCCGGACACGGCCGTCGAGCCCGACAGCCAGGCTGGCCTGCTGCTGAGCGAAGACATGTGA |
Gene | >Hirsu2|2570 ATGGCCGTGGGCGCTTTTCTCGAACCGCTCGTCGTCGTCACCCTGCTCTTCGGCGGCGCTTGGTTCAACCGCAGC ACAGACGTTGACCTGTGGCGCCACGAGCCGGCATGGACGCGCAAGAGGACGGATGAGCTCGACAAGGAGGAGGCC GATCTCGACGACGACCCTCTCGCCGGATCCGACACCTGGAGCGGCAGTTCGACGCCGACGCTCGCCCCCCACGAG GTCCCGGCCCTGCGCCGGCGCAAGCTCTGCTTCCTGGGCTACCAGCGCATCGTCTCGACGCCCAACACGCTCCTC TTCAAGGACCGGTTCCTGAGCCGCGTCCTGCAAAAATTCCCCTTCCTCGCCGAGGCCTGGTATTGGGCCCTGATC TATTGGGTGAGCTCTCCTCGGTCCGGTCGACGGGCATACCGCTAACGATGGTCCCTCGCGCCAGGTCTACCAGGT CGGACGGGCCCTGACGGCCCTGTCGCTCGTCGAGGGCACCGTCAACGTCGCCCGCAAGCATGCGCTCCAGCTCAT CCACCTGGAGCAGCGGCTCAACATCTTTTACGAGGTGCCGGTCCAGCGCTGGTTCCTGGCCCGCCCGACGCTGAT GCACTGGATCAACCGCGTCTACTCCTTCATCCACATCCCCGGCACCATCTTCTTCCTCGTCGCCCTCTTCTACCT GACGACGACGCGCAAGCGCATGGCCGTCGCCGGCCGCGTCCGCTCCGACCCCGTCGCCGCGGGGCCCGCCCTGTA CGAGGCCCGCCGCCGCACCATGGCCATGTGCAACCTCGTCGCCTTCGTCGTCTTCACCCTGTGGCCCTGCATGCC GCCGCGCCTGCTGAGCGACCCGGACTACAGGGGGGACTACGCGGCCGAGGCCAAGAGTTACGGCTTCGTCGACAC CGTCCACGGCAAGGGCGGCGAGAGCAGCGTCTGGACCACGAACCGGTTCTGCAACCAATACGGTGCGTACACGCC CAATTTCTGTTTTCCTTACCGCCGTTCCCCCTTTTCTTCCACCGCCTCCTTTTGTTGTTCGTTTGTTGCCGCGCG TCTGTTGGGCTTTGGAGTCGCGGCATCGTCCGGCTGGATTTTGCCGAGACACGCCGGGGAGATGCGAGCGATTGT AGTAAGCCCACAAGCAGAGAAGTGGACGGAACAGACGGCACGAGAAAGGGCATTGCCTGGAAAAACACCCGACGA CACCAAAAAAAGAAATAAGATCAAGACGCAAAAAAAAAAAAAAGGTCGAAAGGGGCTAACGATTCAGCAGCTGCC ATGCCGTCGCTTCACTTCGGCTACTCCCTGCTGATTGGGCTGACAGTCGCGACGCTACCCATTTCCGGCCTGCGC GCCACGTCGTGGAAGCGGGCCGGGATCGTCGCGCTCGGCATGTCGTATCCGGCCCTGATCCTGACGGCCATCGTG GCGACGGCCAACCACTTCGTGCTCGACGCCGTGGCCGGCGCCCTGGTGTGCGCCGTCGCCTGGCGGGCCAACGGG CTGCTGCTCAACCTGTGCGTGGTCGAGGACTACTTCCTGTGGCTGCTCCGCATCCACAAGCCCGTCAACCACACC GACCCGGACACGGCCGTCGAGCCCGACAGCCAGGCTGGCCTGCTGCTGAGCGAAGACATGTGA |