Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2553
Gene name
LocationContig_161:23112..24296
Strand-
Gene length (bp)1184
Transcript length (bp)1131
Coding sequence length (bp)1131
Protein length (aa) 377

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-09 237 301

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7RUX3|SLT11_NEUCR Pre-mRNA-splicing factor slt-11 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=slt-11 PE=3 SV=2 1 375 5.0E-173
sp|Q4W9V0|SLT11_ASPFU Pre-mRNA-splicing factor slt11 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=slt11 PE=3 SV=1 2 376 7.0E-155
sp|Q5AX35|SLT11_EMENI Pre-mRNA-splicing factor slt11 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=slt11 PE=3 SV=2 1 376 1.0E-152
sp|O59800|SLT11_SCHPO Pre-mRNA-splicing factor cwf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf5 PE=1 SV=1 6 325 7.0E-74
sp|Q6C3L4|SLT11_YARLI Pre-mRNA-splicing factor SLT11 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SLT11 PE=3 SV=1 6 347 9.0E-69
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Swissprot ID Swissprot Description Start End E-value
sp|Q7RUX3|SLT11_NEUCR Pre-mRNA-splicing factor slt-11 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=slt-11 PE=3 SV=2 1 375 5.0E-173
sp|Q4W9V0|SLT11_ASPFU Pre-mRNA-splicing factor slt11 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=slt11 PE=3 SV=1 2 376 7.0E-155
sp|Q5AX35|SLT11_EMENI Pre-mRNA-splicing factor slt11 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=slt11 PE=3 SV=2 1 376 1.0E-152
sp|O59800|SLT11_SCHPO Pre-mRNA-splicing factor cwf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf5 PE=1 SV=1 6 325 7.0E-74
sp|Q6C3L4|SLT11_YARLI Pre-mRNA-splicing factor SLT11 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SLT11 PE=3 SV=1 6 347 9.0E-69
sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1 1 365 8.0E-66
sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1 1 365 2.0E-63
sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1 1 331 3.0E-59
sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1 1 373 5.0E-59
sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1 9 320 5.0E-58
sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=1 SV=1 9 320 2.0E-57
sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2 SV=1 9 320 2.0E-57
sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1 9 320 2.0E-57
sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1 9 320 2.0E-57
sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2 SV=1 9 320 3.0E-57
sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2 SV=1 9 320 7.0E-57
sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1 9 320 9.0E-57
sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1 9 320 2.0E-56
sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1 10 310 7.0E-54
sp|P0CR50|SLT11_CRYNJ Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SLT11 PE=3 SV=1 6 307 6.0E-49
sp|P0CR51|SLT11_CRYNB Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SLT11 PE=3 SV=1 6 307 6.0E-49
sp|Q6BMD1|SLT11_DEBHA Pre-mRNA-splicing factor SLT11 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SLT11 PE=3 SV=2 18 317 8.0E-45
sp|Q4PGU6|SLT11_USTMA Pre-mRNA-splicing factor SLT11 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SLT11 PE=3 SV=1 15 311 2.0E-39
sp|Q9FL40|C3H53_ARATH Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana GN=At5g07060 PE=2 SV=1 6 264 5.0E-38
sp|Q8I4V2|RBM22_PLAF7 Pre-mRNA-splicing factor PFL2310w OS=Plasmodium falciparum (isolate 3D7) GN=PFL2310w PE=3 SV=1 5 304 2.0E-35
sp|Q5A5N5|SLT11_CANAL Pre-mRNA-splicing factor SLT11 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SLT11 PE=3 SV=1 16 319 2.0E-26
sp|P38241|SLT11_YEAST Pre-mRNA-splicing factor SLT11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM2 PE=1 SV=1 20 295 4.0E-19
sp|Q750K9|SLT11_ASHGO Pre-mRNA-splicing factor SLT11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SLT11 PE=3 SV=1 20 124 1.0E-15
sp|Q6FKZ2|SLT11_CANGA Pre-mRNA-splicing factor SLT11 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SLT11 PE=3 SV=1 9 253 1.0E-12
sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2 225 310 2.0E-07
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.5297 0.7739 0.0237 0.0196 0.0616 0.0045 0.0407 0.0213 0.0321 0.0002

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2132
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3683
Ophiocordyceps australis map64 (Brazil) OphauB2|3979
Ophiocordyceps camponoti-floridani Ophcf2|02958
Ophiocordyceps camponoti-rufipedis Ophun1|6300
Ophiocordyceps kimflemingae Ophio5|6916
Ophiocordyceps subramaniannii Hirsu2|2553 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2553
MPPQIKQDLNRSGWETTDFPSVCENCLPDNPFVKMLKEDYGAECKLCTRPFTVFSWSADREQGRKKRTNICLTCA
RLKNCCQSCMLDLSFGLPIAIRDAALKMVAPGPQSDINREFFAQNNEKLIEEGKAGTEEYEKTDDKARELLRRLA
NSKPYFRKGRTVDESELAASSASMGNAAVGAGLGGPGPIRTQDSRAARAAGARGRGGRGRQVFPSAAQLPPSPRD
WLPPDDKNIMSLFVTGIEDDLPEFKLRDFFKVHGKIKSLVCSHMSHCAFVNYETREAAEKAAAACQGRAVIAGCP
LRVRWGQPKAIGTMDKEQRGQMLRDARLPRGHGRNRPAIEGGEQQNPDGQLGGAGIALAAPPGAEEQANYASLAG
E*
Coding >Hirsu2|2553
ATGCCTCCTCAAATCAAGCAAGACCTGAACCGCTCCGGATGGGAGACAACAGACTTTCCATCCGTCTGCGAAAAC
TGCTTGCCCGACAACCCTTTCGTCAAGATGCTCAAAGAAGACTATGGCGCCGAATGCAAACTCTGCACCAGGCCG
TTCACCGTCTTCTCCTGGAGCGCCGACCGGGAGCAGGGACGCAAAAAACGCACCAACATTTGCTTGACATGCGCG
CGACTCAAAAACTGCTGCCAGAGCTGCATGCTCGACCTCTCCTTCGGCCTCCCCATCGCCATTCGAGACGCCGCG
CTTAAGATGGTCGCCCCAGGGCCGCAGTCCGACATCAACAGGGAGTTCTTTGCCCAGAACAACGAGAAGCTCATC
GAGGAGGGCAAGGCGGGAACGGAGGAGTACGAGAAGACGGACGACAAGGCTCGCGAACTGCTGCGCCGGCTGGCC
AACAGCAAACCCTATTTCCGCAAAGGGCGGACGGTAGACGAATCGGAACTGGCGGCGAGCAGCGCCTCGATGGGC
AATGCAGCCGTTGGTGCCGGACTCGGTGGACCGGGTCCGATCCGCACGCAAGACAGCCGAGCTGCCAGGGCAGCT
GGCGCCAGAGGCAGGGGCGGTAGGGGTCGGCAGGTGTTTCCCAGTGCCGCTCAGCTGCCACCGAGCCCCCGAGAC
TGGCTGCCTCCGGACGACAAGAACATCATGTCCCTGTTCGTGACGGGGATCGAGGACGACCTGCCCGAATTCAAG
CTGCGAGATTTCTTCAAGGTCCACGGCAAGATCAAGAGCCTGGTCTGCTCCCACATGTCCCACTGCGCCTTCGTC
AACTACGAAACGAGAGAGGCGGCGGAAAAAGCGGCAGCGGCGTGCCAGGGACGCGCCGTCATTGCGGGGTGTCCC
TTGCGCGTACGATGGGGGCAGCCCAAGGCCATCGGGACCATGGACAAGGAGCAGCGGGGACAGATGCTCCGCGAC
GCCCGCCTGCCCCGGGGACATGGGAGGAACCGACCCGCCATCGAGGGCGGAGAACAGCAGAACCCAGACGGTCAA
CTCGGCGGTGCCGGCATTGCTTTGGCTGCACCCCCAGGTGCGGAAGAGCAAGCAAACTACGCCAGTCTCGCAGGG
GAGTAG
Transcript >Hirsu2|2553
ATGCCTCCTCAAATCAAGCAAGACCTGAACCGCTCCGGATGGGAGACAACAGACTTTCCATCCGTCTGCGAAAAC
TGCTTGCCCGACAACCCTTTCGTCAAGATGCTCAAAGAAGACTATGGCGCCGAATGCAAACTCTGCACCAGGCCG
TTCACCGTCTTCTCCTGGAGCGCCGACCGGGAGCAGGGACGCAAAAAACGCACCAACATTTGCTTGACATGCGCG
CGACTCAAAAACTGCTGCCAGAGCTGCATGCTCGACCTCTCCTTCGGCCTCCCCATCGCCATTCGAGACGCCGCG
CTTAAGATGGTCGCCCCAGGGCCGCAGTCCGACATCAACAGGGAGTTCTTTGCCCAGAACAACGAGAAGCTCATC
GAGGAGGGCAAGGCGGGAACGGAGGAGTACGAGAAGACGGACGACAAGGCTCGCGAACTGCTGCGCCGGCTGGCC
AACAGCAAACCCTATTTCCGCAAAGGGCGGACGGTAGACGAATCGGAACTGGCGGCGAGCAGCGCCTCGATGGGC
AATGCAGCCGTTGGTGCCGGACTCGGTGGACCGGGTCCGATCCGCACGCAAGACAGCCGAGCTGCCAGGGCAGCT
GGCGCCAGAGGCAGGGGCGGTAGGGGTCGGCAGGTGTTTCCCAGTGCCGCTCAGCTGCCACCGAGCCCCCGAGAC
TGGCTGCCTCCGGACGACAAGAACATCATGTCCCTGTTCGTGACGGGGATCGAGGACGACCTGCCCGAATTCAAG
CTGCGAGATTTCTTCAAGGTCCACGGCAAGATCAAGAGCCTGGTCTGCTCCCACATGTCCCACTGCGCCTTCGTC
AACTACGAAACGAGAGAGGCGGCGGAAAAAGCGGCAGCGGCGTGCCAGGGACGCGCCGTCATTGCGGGGTGTCCC
TTGCGCGTACGATGGGGGCAGCCCAAGGCCATCGGGACCATGGACAAGGAGCAGCGGGGACAGATGCTCCGCGAC
GCCCGCCTGCCCCGGGGACATGGGAGGAACCGACCCGCCATCGAGGGCGGAGAACAGCAGAACCCAGACGGTCAA
CTCGGCGGTGCCGGCATTGCTTTGGCTGCACCCCCAGGTGCGGAAGAGCAAGCAAACTACGCCAGTCTCGCAGGG
GAGTAG
Gene >Hirsu2|2553
ATGCCTCCTCAAATCAAGCAAGACCTGAACCGCTCCGGATGGGAGACAACAGACTTTCCATCCGTCTGCGAAAAC
TGCTTGCCCGACAACCCTTTCGTCAAGATGCTCAAAGAAGACTATGGCGCCGAATGCAAACTCGTAGGTCGCCCT
GCTCAACGGCCTTGACTGACGATACTGACACCTCTCGAAAGTGCACCAGGCCGTTCACCGTCTTCTCCTGGAGCG
CCGACCGGGAGCAGGGACGCAAAAAACGCACCAACATTTGCTTGACATGCGCGCGACTCAAAAACTGCTGCCAGA
GCTGCATGCTCGACCTCTCCTTCGGCCTCCCCATCGCCATTCGAGACGCCGCGCTTAAGATGGTCGCCCCAGGGC
CGCAGTCCGACATCAACAGGGAGTTCTTTGCCCAGAACAACGAGAAGCTCATCGAGGAGGGCAAGGCGGGAACGG
AGGAGTACGAGAAGACGGACGACAAGGCTCGCGAACTGCTGCGCCGGCTGGCCAACAGCAAACCCTATTTCCGCA
AAGGGCGGACGGTAGACGAATCGGAACTGGCGGCGAGCAGCGCCTCGATGGGCAATGCAGCCGTTGGTGCCGGAC
TCGGTGGACCGGGTCCGATCCGCACGCAAGACAGCCGAGCTGCCAGGGCAGCTGGCGCCAGAGGCAGGGGCGGTA
GGGGTCGGCAGGTGTTTCCCAGTGCCGCTCAGCTGCCACCGAGCCCCCGAGACTGGCTGCCTCCGGACGACAAGA
ACATCATGTCCCTGTTCGTGACGGGGATCGAGGACGACCTGCCCGAATTCAAGCTGCGAGATTTCTTCAAGGTCC
ACGGCAAGATCAAGAGCCTGGTCTGCTCCCACATGTCCCACTGCGCCTTCGTCAACTACGAAACGAGAGAGGCGG
CGGAAAAAGCGGCAGCGGCGTGCCAGGGACGCGCCGTCATTGCGGGGTGTCCCTTGCGCGTACGATGGGGGCAGC
CCAAGGCCATCGGGACCATGGACAAGGAGCAGCGGGGACAGATGCTCCGCGACGCCCGCCTGCCCCGGGGACATG
GGAGGAACCGACCCGCCATCGAGGGCGGAGAACAGCAGAACCCAGACGGTCAACTCGGCGGTGCCGGCATTGCTT
TGGCTGCACCCCCAGGTGCGGAAGAGCAAGCAAACTACGCCAGTCTCGCAGGGGAGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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