© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2547 |
| Gene name | |
| Location | Contig_161:5702..6815 |
| Strand | - |
| Gene length (bp) | 1113 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07950 | MCP1_TM | MDM10-complementing protein 1, transmembrane domain | 1.3E-32 | 204 | 320 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12106|MCP1_YEAST | MDM10-complementing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCP1 PE=1 SV=1 | 16 | 275 | 2.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 84 | 106 | 22 |
| 2 | 126 | 148 | 22 |
| 3 | 189 | 211 | 22 |
| 4 | 240 | 262 | 22 |
| 5 | 294 | 316 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2547 METPRRLERRDSQQTLISLLQLDPSPIDTPPFAAWTDKELPPLPDDRSDGGASPVKAGSTAGAPGLSSSGGRGAI FYLTRAQRYSSYAMSVFMSLHLANVSLIPLATRSVAGSETYLLMTREIYQTSLTEPLLVALPVLAHVGSGLALRL VRRWQNMRRYGGGTPGMYALHRVMQGDVRPDSPGVRLWPPLSYISLSGYVFAVLYSAHVLINRLLPLAVEGDSSN IGLAYVAHGFARRPGLSLAAYAGLIAAGCGHMVWGAAKWLGMATSTGGWAGKGRGMVDNKTRRQRRRVWMSIHGV AVAVAALWAAGGLGVVARGGAAQGWVGRVYDDMLATVRL* |
| Coding | >Hirsu2|2547 ATGGAGACGCCCAGGCGTCTCGAGCGCCGTGACTCGCAGCAGACGCTGATTTCGCTGCTGCAGCTCGATCCATCG CCCATCGACACGCCGCCCTTCGCCGCATGGACGGACAAGGAGCTTCCGCCGCTGCCCGATGACAGGTCGGACGGC GGCGCAAGCCCCGTCAAGGCCGGCTCGACCGCTGGCGCGCCTGGACTCAGCAGCAGCGGTGGCCGCGGCGCCATC TTCTACCTGACGCGCGCCCAGCGGTACTCGAGCTACGCCATGTCGGTCTTCATGTCGCTTCACCTCGCCAACGTC TCCCTCATCCCTCTGGCGACGCGGTCCGTCGCCGGCTCCGAGACGTACCTCCTCATGACGCGTGAGATCTACCAG ACCTCCCTCACCGAGCCGTTGCTGGTCGCACTCCCCGTCCTGGCGCATGTCGGGTCGGGCCTGGCCCTGCGGCTG GTGAGGAGGTGGCAGAACATGCGGAGGTACGGGGGAGGCACGCCCGGCATGTACGCGCTGCATCGCGTCATGCAA GGAGACGTCAGGCCCGACTCTCCAGGCGTCCGGTTGTGGCCGCCGCTGAGCTACATCTCCCTGTCCGGCTACGTC TTCGCCGTGCTGTACTCGGCGCACGTCTTGATAAACCGGCTCCTGCCGCTGGCCGTCGAGGGCGACAGCTCCAAC ATTGGTCTGGCCTACGTGGCCCACGGTTTTGCCCGGCGTCCCGGCCTGTCTCTGGCCGCCTATGCGGGGCTCATC GCCGCGGGCTGCGGCCACATGGTCTGGGGCGCGGCCAAGTGGCTCGGCATGGCCACCTCAACTGGCGGTTGGGCT GGAAAGGGGAGAGGCATGGTCGACAACAAGACCAGGAGGCAGCGCCGGCGCGTGTGGATGAGCATCCACGGCGTG GCCGTGGCCGTGGCCGCGCTGTGGGCTGCGGGCGGGCTGGGCGTCGTAGCCCGAGGGGGCGCGGCGCAGGGCTGG GTCGGCAGAGTCTATGACGATATGCTGGCCACGGTCCGGCTGTGA |
| Transcript | >Hirsu2|2547 ATGGAGACGCCCAGGCGTCTCGAGCGCCGTGACTCGCAGCAGACGCTGATTTCGCTGCTGCAGCTCGATCCATCG CCCATCGACACGCCGCCCTTCGCCGCATGGACGGACAAGGAGCTTCCGCCGCTGCCCGATGACAGGTCGGACGGC GGCGCAAGCCCCGTCAAGGCCGGCTCGACCGCTGGCGCGCCTGGACTCAGCAGCAGCGGTGGCCGCGGCGCCATC TTCTACCTGACGCGCGCCCAGCGGTACTCGAGCTACGCCATGTCGGTCTTCATGTCGCTTCACCTCGCCAACGTC TCCCTCATCCCTCTGGCGACGCGGTCCGTCGCCGGCTCCGAGACGTACCTCCTCATGACGCGTGAGATCTACCAG ACCTCCCTCACCGAGCCGTTGCTGGTCGCACTCCCCGTCCTGGCGCATGTCGGGTCGGGCCTGGCCCTGCGGCTG GTGAGGAGGTGGCAGAACATGCGGAGGTACGGGGGAGGCACGCCCGGCATGTACGCGCTGCATCGCGTCATGCAA GGAGACGTCAGGCCCGACTCTCCAGGCGTCCGGTTGTGGCCGCCGCTGAGCTACATCTCCCTGTCCGGCTACGTC TTCGCCGTGCTGTACTCGGCGCACGTCTTGATAAACCGGCTCCTGCCGCTGGCCGTCGAGGGCGACAGCTCCAAC ATTGGTCTGGCCTACGTGGCCCACGGTTTTGCCCGGCGTCCCGGCCTGTCTCTGGCCGCCTATGCGGGGCTCATC GCCGCGGGCTGCGGCCACATGGTCTGGGGCGCGGCCAAGTGGCTCGGCATGGCCACCTCAACTGGCGGTTGGGCT GGAAAGGGGAGAGGCATGGTCGACAACAAGACCAGGAGGCAGCGCCGGCGCGTGTGGATGAGCATCCACGGCGTG GCCGTGGCCGTGGCCGCGCTGTGGGCTGCGGGCGGGCTGGGCGTCGTAGCCCGAGGGGGCGCGGCGCAGGGCTGG GTCGGCAGAGTCTATGACGATATGCTGGCCACGGTCCGGCTGTGA |
| Gene | >Hirsu2|2547 ATGGAGACGCCCAGGCGTCTCGAGCGCCGTGACTCGCAGCAGACGCTGATTTCGCTGCTGCAGCTCGATCCATCG CCCATCGACACGCCGCCCTTCGCCGCATGGACGGACAAGGAGCTTCCGCCGCTGCCCGATGACAGGTCGGACGGC GGCGCAAGCCCCGTCAAGGCCGGCTCGACCGCTGGCGCGCCTGGACTCAGCAGCAGCGGTGGCCGCGGCGCCATC TTCTACCGTACGTCGCCCCGAAAGCCCAGCCGTTCCGTAACACGCCAAGCGCGGTGCAGGGCCAGATGAGTGCGG CTGTAGTGACAAGATAGCACGACAGTGACGCGCGCCCAGCGGTACTCGAGCTACGCCATGTCGGTCTTCATGTCG CTTCACCTCGCCAACGTCTCCCTCATCCCTCTGGCGACGCGGTCCGTCGCCGGCTCCGAGACGTACCTCCTCATG ACGCGTGAGATCTACCAGACCTCCCTCACCGAGCCGTTGCTGGTCGCACTCCCCGTCCTGGCGCATGTCGGGTCG GGCCTGGCCCTGCGGCTGGTGAGGAGGTGGCAGAACATGCGGAGGTACGGGGGAGGCACGCCCGGCATGTACGCG CTGCATCGCGTCATGCAAGGAGACGTCAGGCCCGACTCTCCAGGCGTCCGGTTGTGGCCGCCGCTGAGCTACATC TCCCTGTCCGGCTACGTCTTCGCCGTGCTGTACTCGGCGCACGTCTTGATAAACCGGCTCCTGCCGCTGGCCGTC GAGGGCGACAGCTCCAACATTGGTCTGGCCTACGTGGCCCACGGTTTTGCCCGGCGTCCCGGCCTGTCTCTGGCC GCCTATGCGGGGCTCATCGCCGCGGGCTGCGGCCACATGGTCTGGGGCGCGGCCAAGTGGCTCGGCATGGCCACC TCAACTGGCGGTTGGGCTGGAAAGGGGAGAGGCATGGTCGACAACAAGACCAGGAGGCAGCGCCGGCGCGTGTGG ATGAGCATCCACGGCGTGGCCGTGGCCGTGGCCGCGCTGTGGGCTGCGGGCGGGCTGGGCGTCGTAGCCCGAGGG GGCGCGGCGCAGGGCTGGGTCGGCAGAGTCTATGACGATATGCTGGCCACGGTCCGGCTGTGA |