Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2543
Gene name
LocationContig_1609:276..686
Strand-
Gene length (bp)410
Transcript length (bp)276
Coding sequence length (bp)276
Protein length (aa) 92

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13460 NAD_binding_10 NAD(P)H-binding 1.1E-09 9 77
PF05368 NmrA NmrA-like family 4.8E-07 5 75
PF01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain 1.0E-04 5 77
PF01370 Epimerase NAD dependent epimerase/dehydratase family 5.4E-05 5 79

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q12177|YL056_YEAST Uncharacterized protein YLL056C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL056C PE=2 SV=1 3 75 1.0E-06

GO

GO Term Description Terminal node
GO:0050662 coenzyme binding Yes
GO:0051287 NAD binding Yes
GO:0055114 oxidation-reduction process Yes
GO:0003824 catalytic activity Yes
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor Yes
GO:1901265 nucleoside phosphate binding No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors No
GO:0097159 organic cyclic compound binding No
GO:0000166 nucleotide binding No
GO:0036094 small molecule binding No
GO:0008150 biological_process No
GO:0048037 cofactor binding No
GO:1901363 heterocyclic compound binding No
GO:0008152 metabolic process No
GO:0016491 oxidoreductase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2543
MAVKIFLTGATGYIGGTVLDSLVKAHPEYEYRLLVRDEARAGPIRARYPDAALVVGRLEDAAVLEQAAAEADIVV
RASALLPPHRFPPPPR*
Coding >Hirsu2|2543
ATGGCCGTCAAAATCTTCTTGACCGGCGCCACAGGGTACATCGGCGGCACGGTGCTGGACAGCCTCGTCAAGGCG
CACCCCGAGTACGAGTACCGGCTGCTGGTGCGGGACGAGGCGCGGGCGGGGCCGATCCGGGCGCGGTACCCGGAC
GCCGCCCTGGTCGTGGGCCGGCTCGAGGACGCGGCCGTGCTGGAGCAAGCGGCGGCCGAGGCCGACATTGTCGTC
CGTGCGTCCGCCCTTCTCCCTCCCCACCGATTCCCCCCCCCCCCCCGTTGA
Transcript >Hirsu2|2543
ATGGCCGTCAAAATCTTCTTGACCGGCGCCACAGGGTACATCGGCGGCACGGTGCTGGACAGCCTCGTCAAGGCG
CACCCCGAGTACGAGTACCGGCTGCTGGTGCGGGACGAGGCGCGGGCGGGGCCGATCCGGGCGCGGTACCCGGAC
GCCGCCCTGGTCGTGGGCCGGCTCGAGGACGCGGCCGTGCTGGAGCAAGCGGCGGCCGAGGCCGACATTGTCGTC
CGTGCGTCCGCCCTTCTCCCTCCCCACCGATTCCCCCCCCCCCCCCGTTGA
Gene >Hirsu2|2543
ATGGCCGTCAAAATCTTCTTGTTCGTGCCGTCGCCCTCCCGCGCGAGCATGCAGGCGAGCCCCGAGCCGAGCTGA
TTCGTTTCCGTCTGGGTGACAGGACCGGCGCCACAGGTAGGACCGAGTCGGGCGCCGTCGAAGTCGTCGCGGCCG
GCTGACGCACCGAGGCAGGGTACATCGGCGGCACGGTGCTGGACAGCCTCGTCAAGGCGCACCCCGAGTACGAGT
ACCGGCTGCTGGTGCGGGACGAGGCGCGGGCGGGGCCGATCCGGGCGCGGTACCCGGACGCCGCCCTGGTCGTGG
GCCGGCTCGAGGACGCGGCCGTGCTGGAGCAAGCGGCGGCCGAGGCCGACATTGTCGTCCGTGCGTCCGCCCTTC
TCCCTCCCCACCGATTCCCCCCCCCCCCCCGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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