© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|254 |
| Gene name | |
| Location | Contig_1046:3365..4185 |
| Strand | - |
| Gene length (bp) | 820 |
| Transcript length (bp) | 513 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5255 | 0.6087 | 0.6039 | 0.0752 | 0.1602 | 0.0835 | 0.0717 | 0.0432 | 0.0524 | 0.0308 |
| Orthofinder run ID | 4 |
| Orthogroup | 9097 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|254 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|254 MTSRARSSLGDFQSSSRASKRAAKHVLSGQTLPVEAAQATDGRSRHPSPSRTDRHAARGAQPQAATPPAPPSAPP LRQPPPGSVTGPAGFQYPARRLPASSPRLPAHHQPRPTPRRQHVAVARSRHTQPQRPRRRQREKLDLHREPTAQT PDDKRAEASGEAREIRTGTE* |
| Coding | >Hirsu2|254 ATGACGTCACGCGCCAGAAGCAGCTTGGGCGATTTCCAATCATCGTCACGTGCCAGCAAGCGGGCAGCCAAACAT GTTCTGTCTGGACAGACGCTCCCAGTCGAGGCAGCCCAAGCCACGGACGGCCGAAGTCGGCATCCGAGTCCGTCT CGCACCGACAGGCACGCCGCTCGAGGGGCTCAGCCACAGGCCGCGACTCCACCCGCCCCGCCGTCTGCGCCACCT CTGCGCCAGCCTCCGCCCGGCTCAGTGACCGGCCCAGCAGGTTTCCAGTACCCGGCCCGCAGGCTGCCTGCCTCG AGCCCAAGGCTTCCTGCTCACCACCAGCCTCGACCGACTCCGAGGCGCCAGCATGTCGCGGTAGCGCGATCCCGA CATACCCAGCCACAGCGACCTCGGCGCCGACAGCGAGAGAAGCTCGACCTCCACCGCGAACCGACAGCCCAAACG CCCGACGACAAGCGAGCCGAAGCCTCAGGCGAAGCCCGCGAGATCAGGACAGGCACGGAGTAG |
| Transcript | >Hirsu2|254 ATGACGTCACGCGCCAGAAGCAGCTTGGGCGATTTCCAATCATCGTCACGTGCCAGCAAGCGGGCAGCCAAACAT GTTCTGTCTGGACAGACGCTCCCAGTCGAGGCAGCCCAAGCCACGGACGGCCGAAGTCGGCATCCGAGTCCGTCT CGCACCGACAGGCACGCCGCTCGAGGGGCTCAGCCACAGGCCGCGACTCCACCCGCCCCGCCGTCTGCGCCACCT CTGCGCCAGCCTCCGCCCGGCTCAGTGACCGGCCCAGCAGGTTTCCAGTACCCGGCCCGCAGGCTGCCTGCCTCG AGCCCAAGGCTTCCTGCTCACCACCAGCCTCGACCGACTCCGAGGCGCCAGCATGTCGCGGTAGCGCGATCCCGA CATACCCAGCCACAGCGACCTCGGCGCCGACAGCGAGAGAAGCTCGACCTCCACCGCGAACCGACAGCCCAAACG CCCGACGACAAGCGAGCCGAAGCCTCAGGCGAAGCCCGCGAGATCAGGACAGGCACGGAGTAG |
| Gene | >Hirsu2|254 ATGACGTCACGCGCCAGAAGCAGCTTGGGCGATTTCCAATCATCGTCACGTGCCAGCAAGCGGGCAGCCAAACAT GTTCTGTCTGGACAGACGCTCCCAGTGTGAGTAAGCCGCGTCGCGAGAGTCATGGCCAGAGGACGGATGTCTTTT TCGGTGAAGCAGGCTCCCAGGGCGGACACAATGCCGGGAGGCGAAGGCTTCTCCCGATCTTCCGCCCCGTCGACG GCCTCCGGTGCGACGGCAAGTAGTCGCTACCTTGGCGGATTGTACTTGGACTACTTAAAATAGCGAGGCAGCCCA AGCCACGGACGGCCGAAGTCGGCATCCGAGTCCGTCTCGCACCGACAGGCACGCCGCTCGAGGGGCTCAGCCACA GGCCGCGACTCCACCCGCCCCGCCGTCTGCGCCACCTCTGCGCCAGCCTCCGCCCGGCTCAGTGACCGGCCCAGC AGGTTTCCAGTACCCGGCCCGCAGGTACTTGTCGGCACGGCGGCCTAAAAAGCTGGCCATCGACGAGGCTGAGTG AGAGTCGACGAGACGCAATGCCCTGCCCTGCTCAGCCCGCGTCCACGTCACTGCGGCATCCTCACCAAGGCTGCC TGCCTCGAGCCCAAGGCTTCCTGCTCACCACCAGCCTCGACCGACTCCGAGGCGCCAGCATGTCGCGGTAGCGCG ATCCCGACATACCCAGCCACAGCGACCTCGGCGCCGACAGCGAGAGAAGCTCGACCTCCACCGCGAACCGACAGC CCAAACGCCCGACGACAAGCGAGCCGAAGCCTCAGGCGAAGCCCGCGAGATCAGGACAGGCACGGAGTAG |