© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2539 |
| Gene name | |
| Location | Contig_1607:43..1324 |
| Strand | + |
| Gene length (bp) | 1281 |
| Transcript length (bp) | 1104 |
| Coding sequence length (bp) | 1104 |
| Protein length (aa) | 368 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2584 | 0.07 | 0.7998 | 0.3624 | 0.227 | 0.4068 | 0.3187 | 0.3383 | 0.2444 | 0.0151 |
| Orthofinder run ID | 4 |
| Orthogroup | 6566 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis 1348a (Ghana) | OphauG2|4529 |
| Ophiocordyceps australis map64 (Brazil) | OphauB2|7605 |
| Ophiocordyceps subramaniannii | Hirsu2|2539 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2539 MGVATVLAPAAVLAVAAANFLDAFTGTSDPELWRAKGGDTMVRISDLGVVWPLDLPPWQFAALVTGELAPAAGRD HDNGNRSACNEHRCWHAELAVPGVVLPAGGGRPRHGNVSVTVEGVFDPDRGCCSRGTLVAMLARLLRSEYDPVRT PFLKVRTQDHARKPGRIDYRPVYQGPQAIGVGIGFSPTKYWLNLKISSDPELAEARPRTGWCDHFKNRALKQFDV DLHSFRDPHKLGFVRCLWKGSAHEPPLRLGYKSPGAAPREEPGIKTDGAANLTTAGVSSATHPSGTASAGVSSAA HSSGTASTGVSSAAHSSGTASAGVSSAAQSSGTASTGVSSAAYPSGPATAGVLSATRPAGTATAGGK* |
| Coding | >Hirsu2|2539 ATGGGCGTGGCGACGGTCCTCGCCCCCGCGGCCGTGCTCGCCGTCGCGGCGGCCAACTTCCTCGACGCCTTCACC GGCACGTCAGACCCGGAGCTGTGGCGGGCCAAGGGCGGCGACACCATGGTGCGCATCTCGGACCTGGGCGTCGTC TGGCCGCTGGACCTGCCGCCGTGGCAGTTCGCGGCGCTGGTGACGGGCGAGCTGGCGCCGGCGGCCGGGCGCGAC CACGACAACGGCAACCGCTCCGCCTGCAACGAGCACCGGTGCTGGCACGCCGAGCTGGCGGTGCCGGGCGTCGTG CTGCCGGCGGGGGGCGGGCGGCCGCGCCACGGCAACGTCTCCGTCACGGTCGAGGGCGTCTTCGACCCGGACCGC GGCTGCTGCTCGCGCGGCACCCTCGTCGCTATGCTCGCCCGGCTGCTGCGCAGCGAGTACGACCCGGTCCGGACG CCTTTCCTCAAGGTCCGCACCCAGGACCACGCCCGGAAGCCGGGCCGGATCGACTACAGACCAGTCTACCAGGGC CCGCAGGCCATCGGCGTCGGCATCGGCTTCAGCCCGACCAAGTACTGGCTCAACCTCAAGATCTCGAGCGACCCG GAGCTGGCCGAGGCCCGGCCGCGGACCGGCTGGTGCGACCACTTCAAGAACCGCGCCCTCAAACAATTCGACGTC GACCTGCACAGCTTCAGGGATCCCCATAAGCTGGGCTTCGTCCGCTGCCTGTGGAAGGGCTCCGCCCACGAGCCG CCCCTGCGCCTCGGCTACAAGAGCCCCGGCGCCGCGCCGCGCGAGGAGCCCGGCATCAAGACGGACGGGGCAGCC AACCTCACCACCGCCGGCGTGTCGTCTGCCACTCACCCCTCGGGAACCGCCTCCGCCGGCGTGTCGTCTGCCGCT CACAGTTCGGGAACCGCCTCCACCGGCGTCTCGTCTGCCGCTCACAGTTCGGGCACCGCCTCCGCCGGCGTCTCG TCTGCCGCTCAGAGTTCGGGCACCGCCTCCACCGGCGTCTCGTCTGCCGCTTACCCTTCGGGACCGGCCACCGCC GGCGTCTTGTCTGCCACTCGCCCTGCGGGCACCGCCACCGCTGGGGGAAAGTAG |
| Transcript | >Hirsu2|2539 ATGGGCGTGGCGACGGTCCTCGCCCCCGCGGCCGTGCTCGCCGTCGCGGCGGCCAACTTCCTCGACGCCTTCACC GGCACGTCAGACCCGGAGCTGTGGCGGGCCAAGGGCGGCGACACCATGGTGCGCATCTCGGACCTGGGCGTCGTC TGGCCGCTGGACCTGCCGCCGTGGCAGTTCGCGGCGCTGGTGACGGGCGAGCTGGCGCCGGCGGCCGGGCGCGAC CACGACAACGGCAACCGCTCCGCCTGCAACGAGCACCGGTGCTGGCACGCCGAGCTGGCGGTGCCGGGCGTCGTG CTGCCGGCGGGGGGCGGGCGGCCGCGCCACGGCAACGTCTCCGTCACGGTCGAGGGCGTCTTCGACCCGGACCGC GGCTGCTGCTCGCGCGGCACCCTCGTCGCTATGCTCGCCCGGCTGCTGCGCAGCGAGTACGACCCGGTCCGGACG CCTTTCCTCAAGGTCCGCACCCAGGACCACGCCCGGAAGCCGGGCCGGATCGACTACAGACCAGTCTACCAGGGC CCGCAGGCCATCGGCGTCGGCATCGGCTTCAGCCCGACCAAGTACTGGCTCAACCTCAAGATCTCGAGCGACCCG GAGCTGGCCGAGGCCCGGCCGCGGACCGGCTGGTGCGACCACTTCAAGAACCGCGCCCTCAAACAATTCGACGTC GACCTGCACAGCTTCAGGGATCCCCATAAGCTGGGCTTCGTCCGCTGCCTGTGGAAGGGCTCCGCCCACGAGCCG CCCCTGCGCCTCGGCTACAAGAGCCCCGGCGCCGCGCCGCGCGAGGAGCCCGGCATCAAGACGGACGGGGCAGCC AACCTCACCACCGCCGGCGTGTCGTCTGCCACTCACCCCTCGGGAACCGCCTCCGCCGGCGTGTCGTCTGCCGCT CACAGTTCGGGAACCGCCTCCACCGGCGTCTCGTCTGCCGCTCACAGTTCGGGCACCGCCTCCGCCGGCGTCTCG TCTGCCGCTCAGAGTTCGGGCACCGCCTCCACCGGCGTCTCGTCTGCCGCTTACCCTTCGGGACCGGCCACCGCC GGCGTCTTGTCTGCCACTCGCCCTGCGGGCACCGCCACCGCTGGGGGAAAGTAG |
| Gene | >Hirsu2|2539 ATGGGCGTGGCGACGGTCCTCGCCCCCGCGGCCGTGCTCGCCGTCGCGGCGGCCAACTTCCTCGACGCCTTCACC GGCACGTCAGACCCGGAGCTGTGGCGGGCCAAGGGCGGCGACACCATGGTGCGCATCTCGGACCTGGGCGTCGTC TGGCCGCTGGACCTGCCGCCGTGGCAGTTCGCGGCGCTGGTGACGGGCGAGCTGGCGCCGGCGGCCGGGCGCGAC CACGACAACGGCAACCGCTCCGCCTGCAACGAGCACCGGTGCTGGCACGCCGAGCTGGCGGTGCCGGGCGTCGTG CTGCCGGCGGGGGGCGGGCGGCCGCGCCACGGCAACGTCTCCGTCACGGTCGAGGGCGTCTTCGACCCGGACCGC GGCTGCTGCTCGCGCGGCACCCTCGTCGCTATGCTCGCCCGGCTGCTGCGCAGCGAGTACGACCCGGTCCGGACG CCTTTCCTCAAGGTCCGCACCCAGGACCACGCCCGGAAGCCGGGCCGGATCGGTGCGTTGTCGCCCCACCCCCGG ATAATCCGGCCCCGGTGTGCCCGGCTTCGGAGCTGGCGCCACCCACCACTTCCTTTTTTGTCCCCGTCCCTTCCC TTCCCTTCCCTCCCCCCCCCCCCTTTCAGAAAACCAACAGCAGTAACAGCAGGCCGAACTGATTCCCTTCTCGGC ACAGACTACAGACCAGTCTACCAGGGCCCGCAGGCCATCGGCGTCGGCATCGGCTTCAGCCCGACCAAGTACTGG CTCAACCTCAAGATCTCGAGCGACCCGGAGCTGGCCGAGGCCCGGCCGCGGACCGGCTGGTGCGACCACTTCAAG AACCGCGCCCTCAAACAATTCGACGTCGACCTGCACAGCTTCAGGGATCCCCATAAGCTGGGCTTCGTCCGCTGC CTGTGGAAGGGCTCCGCCCACGAGCCGCCCCTGCGCCTCGGCTACAAGAGCCCCGGCGCCGCGCCGCGCGAGGAG CCCGGCATCAAGACGGACGGGGCAGCCAACCTCACCACCGCCGGCGTGTCGTCTGCCACTCACCCCTCGGGAACC GCCTCCGCCGGCGTGTCGTCTGCCGCTCACAGTTCGGGAACCGCCTCCACCGGCGTCTCGTCTGCCGCTCACAGT TCGGGCACCGCCTCCGCCGGCGTCTCGTCTGCCGCTCAGAGTTCGGGCACCGCCTCCACCGGCGTCTCGTCTGCC GCTTACCCTTCGGGACCGGCCACCGCCGGCGTCTTGTCTGCCACTCGCCCTGCGGGCACCGCCACCGCTGGGGGA AAGTAG |