Protein ID | Hirsu2|253 |
Gene name | |
Location | Contig_1046:1625..3308 |
Strand | - |
Gene length (bp) | 1683 |
Transcript length (bp) | 1683 |
Coding sequence length (bp) | 1683 |
Protein length (aa) | 561 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00339 | Arrestin_N | Arrestin (or S-antigen), N-terminal domain | 6.4E-10 | 4 | 127 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear localization signal|Nuclear export signal | 0.6248 | 0.4135 | 0.0692 | 0.2111 | 0.1323 | 0.0055 | 0.1188 | 0.2555 | 0.2218 | 0.0195 |
Orthofinder run ID | 4 |
Orthogroup | 2121 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|253 MSLRITLDNRPEFYTNLDQVSGRIVLGLTRSEQVGSIVVKLQGECVTALQVPNPYDVDAKGRPPPPMPGPPGSIV AENHKILYRIHQVFPDDYHSSSSNPYGAFPLQPGEHEFPFSFKMPINNACSDHAAMSRIGGLGMGGGGLFGMGGV RLMDGSKQLFLQHVTRTLPPSLTGFPTEAEIRYYIKVTVQRPGILKENWRYQTGLKFLPIEPPRPPRSGQEAFAR RPFTFLPRASATSSSFPHAVKKRSSFFTRKPERGFGAGDLSTPPPESRPQTPPIPPPSIEMSARLPHPPILTCNQ PVPLRLIAKKLVGCPEQVYLVSFQMDLVGITQVRSHSIYHDRTNRWVVVSASNLSIPVTSPDDELGHELVLPDEL WKNCPLPNTVAPSFVACNLARRYELEIRLGLSWGKSKTVLATTDAFSRSQTIYLPLHFSQIEVYSGITPPPELVA AATSGRPGRVTASGPPRLPPRNSSPRPASSARPSQSQNEAPPMPARPAYDPLYPPQLAPGQTVAPTDDAPPSYDE AMAENLSGPFDGSRSRPAYSGVTNENAPSQMPEKS* |
Coding | >Hirsu2|253 ATGTCGCTCCGCATCACGCTCGACAACCGGCCCGAGTTCTACACAAACCTCGACCAGGTCTCGGGCCGCATCGTC CTCGGCCTCACCCGCTCCGAGCAGGTCGGCAGCATCGTCGTCAAGCTCCAGGGCGAGTGCGTCACGGCGCTGCAG GTGCCCAATCCGTACGATGTCGACGCCAAGGGCCGCCCGCCGCCGCCCATGCCGGGGCCGCCCGGCAGTATCGTG GCCGAGAACCACAAGATCCTCTACCGCATCCACCAGGTCTTCCCCGACGACTACCACTCGAGCTCCAGCAACCCC TACGGCGCCTTCCCGCTCCAGCCCGGCGAGCACGAGTTCCCCTTCAGCTTCAAGATGCCCATCAACAACGCCTGC AGCGACCACGCCGCCATGTCGCGCATCGGCGGCCTCGGCATGGGCGGCGGCGGCCTGTTCGGCATGGGCGGCGTC CGCCTCATGGACGGCAGCAAGCAGCTCTTCCTCCAGCACGTCACCCGCACCCTGCCGCCCTCGCTGACCGGCTTC CCGACCGAGGCCGAGATCCGCTACTACATCAAGGTCACCGTCCAGCGTCCCGGCATCCTCAAGGAGAACTGGCGC TACCAGACCGGCCTCAAGTTCCTCCCCATCGAGCCGCCCAGGCCCCCTCGCTCCGGCCAGGAGGCCTTTGCCCGC CGGCCCTTTACCTTTCTTCCGCGCGCTTCCGCCACCTCGTCCTCCTTTCCACATGCCGTCAAGAAGCGCAGCTCC TTCTTCACCAGGAAACCGGAAAGGGGGTTCGGCGCTGGCGACCTGTCCACGCCGCCCCCCGAATCTCGCCCCCAG ACGCCCCCGATCCCGCCCCCGTCCATCGAGATGTCGGCCCGGCTGCCTCACCCGCCCATCCTCACCTGCAACCAG CCCGTCCCCCTCCGCCTCATCGCCAAAAAGCTCGTCGGCTGTCCCGAGCAGGTCTATCTCGTGTCTTTCCAGATG GACCTTGTCGGGATCACGCAGGTCCGGTCCCACAGCATCTACCACGACCGGACGAACCGCTGGGTCGTCGTCTCC GCCTCCAACCTGAGCATCCCCGTCACATCGCCCGACGACGAGCTGGGCCACGAGCTGGTCCTTCCCGACGAGCTG TGGAAGAACTGCCCCCTTCCAAACACCGTCGCGCCGTCTTTCGTCGCCTGCAACCTTGCGCGGCGATACGAGCTG GAGATACGGCTGGGCTTGTCGTGGGGGAAGTCCAAGACGGTGCTGGCAACCACCGACGCCTTCTCCCGATCCCAG ACCATCTACCTCCCCCTCCACTTTTCCCAGATAGAGGTCTACTCGGGCATCACGCCTCCCCCGGAGCTCGTGGCG GCCGCCACGAGTGGACGGCCCGGACGCGTGACGGCGAGCGGCCCCCCTCGCCTGCCTCCTCGAAACTCTAGCCCC AGGCCGGCTTCGTCTGCGCGGCCCTCGCAGTCGCAAAACGAGGCTCCGCCCATGCCCGCTCGCCCCGCGTACGAC CCCTTATACCCTCCTCAACTGGCGCCCGGCCAGACGGTGGCGCCCACCGACGACGCTCCTCCCAGCTACGACGAG GCCATGGCCGAGAACCTCTCCGGGCCGTTTGACGGCTCGCGGTCCAGGCCGGCTTACAGCGGAGTGACGAACGAG AACGCCCCGAGTCAGATGCCGGAGAAGAGCTGA |
Transcript | >Hirsu2|253 ATGTCGCTCCGCATCACGCTCGACAACCGGCCCGAGTTCTACACAAACCTCGACCAGGTCTCGGGCCGCATCGTC CTCGGCCTCACCCGCTCCGAGCAGGTCGGCAGCATCGTCGTCAAGCTCCAGGGCGAGTGCGTCACGGCGCTGCAG GTGCCCAATCCGTACGATGTCGACGCCAAGGGCCGCCCGCCGCCGCCCATGCCGGGGCCGCCCGGCAGTATCGTG GCCGAGAACCACAAGATCCTCTACCGCATCCACCAGGTCTTCCCCGACGACTACCACTCGAGCTCCAGCAACCCC TACGGCGCCTTCCCGCTCCAGCCCGGCGAGCACGAGTTCCCCTTCAGCTTCAAGATGCCCATCAACAACGCCTGC AGCGACCACGCCGCCATGTCGCGCATCGGCGGCCTCGGCATGGGCGGCGGCGGCCTGTTCGGCATGGGCGGCGTC CGCCTCATGGACGGCAGCAAGCAGCTCTTCCTCCAGCACGTCACCCGCACCCTGCCGCCCTCGCTGACCGGCTTC CCGACCGAGGCCGAGATCCGCTACTACATCAAGGTCACCGTCCAGCGTCCCGGCATCCTCAAGGAGAACTGGCGC TACCAGACCGGCCTCAAGTTCCTCCCCATCGAGCCGCCCAGGCCCCCTCGCTCCGGCCAGGAGGCCTTTGCCCGC CGGCCCTTTACCTTTCTTCCGCGCGCTTCCGCCACCTCGTCCTCCTTTCCACATGCCGTCAAGAAGCGCAGCTCC TTCTTCACCAGGAAACCGGAAAGGGGGTTCGGCGCTGGCGACCTGTCCACGCCGCCCCCCGAATCTCGCCCCCAG ACGCCCCCGATCCCGCCCCCGTCCATCGAGATGTCGGCCCGGCTGCCTCACCCGCCCATCCTCACCTGCAACCAG CCCGTCCCCCTCCGCCTCATCGCCAAAAAGCTCGTCGGCTGTCCCGAGCAGGTCTATCTCGTGTCTTTCCAGATG GACCTTGTCGGGATCACGCAGGTCCGGTCCCACAGCATCTACCACGACCGGACGAACCGCTGGGTCGTCGTCTCC GCCTCCAACCTGAGCATCCCCGTCACATCGCCCGACGACGAGCTGGGCCACGAGCTGGTCCTTCCCGACGAGCTG TGGAAGAACTGCCCCCTTCCAAACACCGTCGCGCCGTCTTTCGTCGCCTGCAACCTTGCGCGGCGATACGAGCTG GAGATACGGCTGGGCTTGTCGTGGGGGAAGTCCAAGACGGTGCTGGCAACCACCGACGCCTTCTCCCGATCCCAG ACCATCTACCTCCCCCTCCACTTTTCCCAGATAGAGGTCTACTCGGGCATCACGCCTCCCCCGGAGCTCGTGGCG GCCGCCACGAGTGGACGGCCCGGACGCGTGACGGCGAGCGGCCCCCCTCGCCTGCCTCCTCGAAACTCTAGCCCC AGGCCGGCTTCGTCTGCGCGGCCCTCGCAGTCGCAAAACGAGGCTCCGCCCATGCCCGCTCGCCCCGCGTACGAC CCCTTATACCCTCCTCAACTGGCGCCCGGCCAGACGGTGGCGCCCACCGACGACGCTCCTCCCAGCTACGACGAG GCCATGGCCGAGAACCTCTCCGGGCCGTTTGACGGCTCGCGGTCCAGGCCGGCTTACAGCGGAGTGACGAACGAG AACGCCCCGAGTCAGATGCCGGAGAAGAGCTGA |
Gene | >Hirsu2|253 ATGTCGCTCCGCATCACGCTCGACAACCGGCCCGAGTTCTACACAAACCTCGACCAGGTCTCGGGCCGCATCGTC CTCGGCCTCACCCGCTCCGAGCAGGTCGGCAGCATCGTCGTCAAGCTCCAGGGCGAGTGCGTCACGGCGCTGCAG GTGCCCAATCCGTACGATGTCGACGCCAAGGGCCGCCCGCCGCCGCCCATGCCGGGGCCGCCCGGCAGTATCGTG GCCGAGAACCACAAGATCCTCTACCGCATCCACCAGGTCTTCCCCGACGACTACCACTCGAGCTCCAGCAACCCC TACGGCGCCTTCCCGCTCCAGCCCGGCGAGCACGAGTTCCCCTTCAGCTTCAAGATGCCCATCAACAACGCCTGC AGCGACCACGCCGCCATGTCGCGCATCGGCGGCCTCGGCATGGGCGGCGGCGGCCTGTTCGGCATGGGCGGCGTC CGCCTCATGGACGGCAGCAAGCAGCTCTTCCTCCAGCACGTCACCCGCACCCTGCCGCCCTCGCTGACCGGCTTC CCGACCGAGGCCGAGATCCGCTACTACATCAAGGTCACCGTCCAGCGTCCCGGCATCCTCAAGGAGAACTGGCGC TACCAGACCGGCCTCAAGTTCCTCCCCATCGAGCCGCCCAGGCCCCCTCGCTCCGGCCAGGAGGCCTTTGCCCGC CGGCCCTTTACCTTTCTTCCGCGCGCTTCCGCCACCTCGTCCTCCTTTCCACATGCCGTCAAGAAGCGCAGCTCC TTCTTCACCAGGAAACCGGAAAGGGGGTTCGGCGCTGGCGACCTGTCCACGCCGCCCCCCGAATCTCGCCCCCAG ACGCCCCCGATCCCGCCCCCGTCCATCGAGATGTCGGCCCGGCTGCCTCACCCGCCCATCCTCACCTGCAACCAG CCCGTCCCCCTCCGCCTCATCGCCAAAAAGCTCGTCGGCTGTCCCGAGCAGGTCTATCTCGTGTCTTTCCAGATG GACCTTGTCGGGATCACGCAGGTCCGGTCCCACAGCATCTACCACGACCGGACGAACCGCTGGGTCGTCGTCTCC GCCTCCAACCTGAGCATCCCCGTCACATCGCCCGACGACGAGCTGGGCCACGAGCTGGTCCTTCCCGACGAGCTG TGGAAGAACTGCCCCCTTCCAAACACCGTCGCGCCGTCTTTCGTCGCCTGCAACCTTGCGCGGCGATACGAGCTG GAGATACGGCTGGGCTTGTCGTGGGGGAAGTCCAAGACGGTGCTGGCAACCACCGACGCCTTCTCCCGATCCCAG ACCATCTACCTCCCCCTCCACTTTTCCCAGATAGAGGTCTACTCGGGCATCACGCCTCCCCCGGAGCTCGTGGCG GCCGCCACGAGTGGACGGCCCGGACGCGTGACGGCGAGCGGCCCCCCTCGCCTGCCTCCTCGAAACTCTAGCCCC AGGCCGGCTTCGTCTGCGCGGCCCTCGCAGTCGCAAAACGAGGCTCCGCCCATGCCCGCTCGCCCCGCGTACGAC CCCTTATACCCTCCTCAACTGGCGCCCGGCCAGACGGTGGCGCCCACCGACGACGCTCCTCCCAGCTACGACGAG GCCATGGCCGAGAACCTCTCCGGGCCGTTTGACGGCTCGCGGTCCAGGCCGGCTTACAGCGGAGTGACGAACGAG AACGCCCCGAGTCAGATGCCGGAGAAGAGCTGA |