© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2500 |
| Gene name | |
| Location | Contig_16:45239..46104 |
| Strand | - |
| Gene length (bp) | 865 |
| Transcript length (bp) | 351 |
| Coding sequence length (bp) | 351 |
| Protein length (aa) | 117 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00957 | Synaptobrevin | Synaptobrevin | 3.5E-33 | 26 | 111 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P33328|SNC2_YEAST | Synaptobrevin homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC2 PE=1 SV=2 | 7 | 97 | 1.0E-41 |
| sp|Q92356|SYB1_SCHPO | Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syb1 PE=3 SV=1 | 7 | 93 | 4.0E-40 |
| sp|P31109|SNC1_YEAST | Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC1 PE=1 SV=1 | 7 | 95 | 4.0E-37 |
| sp|O70480|VAMP4_MOUSE | Vesicle-associated membrane protein 4 OS=Mus musculus GN=Vamp4 PE=1 SV=1 | 11 | 93 | 2.0E-14 |
| sp|O75379|VAMP4_HUMAN | Vesicle-associated membrane protein 4 OS=Homo sapiens GN=VAMP4 PE=1 SV=2 | 11 | 93 | 2.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P33328|SNC2_YEAST | Synaptobrevin homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC2 PE=1 SV=2 | 7 | 97 | 1.0E-41 |
| sp|Q92356|SYB1_SCHPO | Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syb1 PE=3 SV=1 | 7 | 93 | 4.0E-40 |
| sp|P31109|SNC1_YEAST | Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC1 PE=1 SV=1 | 7 | 95 | 4.0E-37 |
| sp|O70480|VAMP4_MOUSE | Vesicle-associated membrane protein 4 OS=Mus musculus GN=Vamp4 PE=1 SV=1 | 11 | 93 | 2.0E-14 |
| sp|O75379|VAMP4_HUMAN | Vesicle-associated membrane protein 4 OS=Homo sapiens GN=VAMP4 PE=1 SV=2 | 11 | 93 | 2.0E-14 |
| sp|Q32L97|VAMP4_BOVIN | Vesicle-associated membrane protein 4 OS=Bos taurus GN=VAMP4 PE=2 SV=1 | 11 | 96 | 2.0E-14 |
| sp|P18489|SYB_DROME | Synaptobrevin OS=Drosophila melanogaster GN=Syb PE=2 SV=3 | 5 | 112 | 3.0E-14 |
| sp|Q9M376|VA727_ARATH | Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1 | 27 | 108 | 3.0E-14 |
| sp|Q60WU2|SYB1_CAEBR | Synaptobrevin-1 OS=Caenorhabditis briggsae GN=snb-1 PE=3 SV=1 | 15 | 98 | 4.0E-14 |
| sp|P13701|SYB_TORCA | Synaptobrevin OS=Torpedo californica PE=2 SV=1 | 10 | 96 | 2.0E-13 |
| sp|P63025|VAMP3_RAT | Vesicle-associated membrane protein 3 OS=Rattus norvegicus GN=Vamp3 PE=1 SV=1 | 12 | 92 | 5.0E-13 |
| sp|P63024|VAMP3_MOUSE | Vesicle-associated membrane protein 3 OS=Mus musculus GN=Vamp3 PE=1 SV=1 | 12 | 92 | 5.0E-13 |
| sp|O70404|VAMP8_MOUSE | Vesicle-associated membrane protein 8 OS=Mus musculus GN=Vamp8 PE=1 SV=1 | 22 | 92 | 9.0E-13 |
| sp|Q9WUF4|VAMP8_RAT | Vesicle-associated membrane protein 8 OS=Rattus norvegicus GN=Vamp8 PE=1 SV=1 | 22 | 92 | 1.0E-12 |
| sp|Q54GB3|SYBB_DICDI | Synaptobrevin-B OS=Dictyostelium discoideum GN=sybB PE=3 SV=1 | 22 | 113 | 2.0E-12 |
| sp|P63026|VAMP2_BOVIN | Vesicle-associated membrane protein 2 OS=Bos taurus GN=VAMP2 PE=1 SV=2 | 25 | 96 | 3.0E-12 |
| sp|P63045|VAMP2_RAT | Vesicle-associated membrane protein 2 OS=Rattus norvegicus GN=Vamp2 PE=1 SV=2 | 25 | 96 | 3.0E-12 |
| sp|P63044|VAMP2_MOUSE | Vesicle-associated membrane protein 2 OS=Mus musculus GN=Vamp2 PE=1 SV=2 | 25 | 96 | 3.0E-12 |
| sp|Q9N0Y0|VAMP2_MACMU | Vesicle-associated membrane protein 2 OS=Macaca mulatta GN=VAMP2 PE=3 SV=3 | 25 | 96 | 3.0E-12 |
| sp|P63027|VAMP2_HUMAN | Vesicle-associated membrane protein 2 OS=Homo sapiens GN=VAMP2 PE=1 SV=3 | 25 | 96 | 3.0E-12 |
| sp|P47193|VAMP2_XENLA | Vesicle-associated membrane protein 2 OS=Xenopus laevis GN=vamp2 PE=3 SV=3 | 25 | 100 | 3.0E-12 |
| sp|Q12255|NYV1_YEAST | Vacuolar v-SNARE NYV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NYV1 PE=1 SV=2 | 14 | 105 | 4.0E-12 |
| sp|O02495|SYB1_CAEEL | Synaptobrevin-1 OS=Caenorhabditis elegans GN=snb-1 PE=1 SV=1 | 25 | 98 | 4.0E-12 |
| sp|O48850|VA725_ARATH | Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2 | 27 | 93 | 5.0E-12 |
| sp|Q9BV40|VAMP8_HUMAN | Vesicle-associated membrane protein 8 OS=Homo sapiens GN=VAMP8 PE=1 SV=1 | 24 | 92 | 6.0E-12 |
| sp|Q5REQ5|VAMP8_PONAB | Vesicle-associated membrane protein 8 OS=Pongo abelii GN=VAMP8 PE=3 SV=1 | 24 | 92 | 6.0E-12 |
| sp|Q9MAS5|VA726_ARATH | Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2 | 27 | 94 | 8.0E-12 |
| sp|P47192|VA722_ARATH | Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2 | 27 | 93 | 8.0E-12 |
| sp|Q9LFP1|VA713_ARATH | Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1 | 28 | 109 | 2.0E-11 |
| sp|Q9ZTW3|VA721_ARATH | Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1 | 27 | 93 | 2.0E-11 |
| sp|Q0V7N0|VAMP1_BOVIN | Vesicle-associated membrane protein 1 OS=Bos taurus GN=VAMP1 PE=3 SV=2 | 25 | 96 | 2.0E-11 |
| sp|Q62442|VAMP1_MOUSE | Vesicle-associated membrane protein 1 OS=Mus musculus GN=Vamp1 PE=1 SV=1 | 25 | 96 | 2.0E-11 |
| sp|Q15836|VAMP3_HUMAN | Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3 | 18 | 92 | 2.0E-11 |
| sp|Q63666|VAMP1_RAT | Vesicle-associated membrane protein 1 OS=Rattus norvegicus GN=Vamp1 PE=1 SV=2 | 25 | 96 | 2.0E-11 |
| sp|Q4R8T0|VAMP3_MACFA | Vesicle-associated membrane protein 3 OS=Macaca fascicularis GN=VAMP3 PE=3 SV=1 | 18 | 92 | 2.0E-11 |
| sp|Q3T0Y8|VAMP8_BOVIN | Vesicle-associated membrane protein 8 OS=Bos taurus GN=VAMP8 PE=3 SV=1 | 22 | 92 | 3.0E-11 |
| sp|P23763|VAMP1_HUMAN | Vesicle-associated membrane protein 1 OS=Homo sapiens GN=VAMP1 PE=1 SV=1 | 25 | 96 | 7.0E-11 |
| sp|Q9FMR5|VA714_ARATH | Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1 | 32 | 108 | 1.0E-10 |
| sp|O23429|VA724_ARATH | Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2 | 32 | 93 | 4.0E-10 |
| sp|P47194|SYB_DORPE | Synaptobrevin OS=Doryteuthis pealeii PE=1 SV=1 | 28 | 96 | 6.0E-10 |
| sp|Q2KJD2|VAMP3_BOVIN | Vesicle-associated membrane protein 3 OS=Bos taurus GN=VAMP3 PE=3 SV=1 | 28 | 92 | 1.0E-09 |
| sp|O49377|VA711_ARATH | Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=1 SV=2 | 28 | 91 | 2.0E-09 |
| sp|Q27236|SYBL_SCHMA | Synaptobrevin-like protein OS=Schistosoma mansoni PE=2 SV=1 | 26 | 92 | 3.0E-09 |
| sp|Q5RF94|VAMP7_PONAB | Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3 | 33 | 92 | 8.0E-09 |
| sp|P51809|VAMP7_HUMAN | Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3 | 33 | 92 | 8.0E-09 |
| sp|Q17QI5|VAMP7_BOVIN | Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1 | 33 | 92 | 8.0E-09 |
| sp|Q5ZL74|VAMP7_CHICK | Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1 | 12 | 92 | 9.0E-09 |
| sp|Q9JHW5|VAMP7_RAT | Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1 | 28 | 92 | 9.0E-09 |
| sp|P70280|VAMP7_MOUSE | Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1 SV=1 | 33 | 92 | 1.0E-08 |
| sp|Q54NW7|VAM7A_DICDI | Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1 | 6 | 109 | 1.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 92 | 114 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2500 MPEQDAPYDPYIPSGQAGAQQGAGGNARTQALQAQIDDTVGVMRDNINKVSQRGERLDALQDKTDNLAVSAQGFR RGANRVRKQMWWKDMKMRMCLIAGIIILLLIIIIPTVVATR* |
| Coding | >Hirsu2|2500 ATGCCTGAGCAGGACGCCCCGTACGATCCCTACATCCCCAGCGGCCAGGCCGGCGCGCAACAAGGTGCCGGCGGC AATGCCAGGACCCAGGCTCTCCAAGCGCAAATCGACGACACCGTCGGTGTGATGCGCGACAACATCAACAAGGTC TCCCAGCGCGGCGAACGTCTGGATGCGCTCCAGGATAAGACGGACAATTTGGCCGTTTCGGCCCAGGGATTTCGT CGTGGTGCCAACCGGGTCCGCAAGCAGATGTGGTGGAAGGACATGAAGATGCGCATGTGCCTGATCGCGGGCATC ATCATCCTACTACTCATCATCATCATCCCCACCGTCGTCGCTACCCGTTAA |
| Transcript | >Hirsu2|2500 ATGCCTGAGCAGGACGCCCCGTACGATCCCTACATCCCCAGCGGCCAGGCCGGCGCGCAACAAGGTGCCGGCGGC AATGCCAGGACCCAGGCTCTCCAAGCGCAAATCGACGACACCGTCGGTGTGATGCGCGACAACATCAACAAGGTC TCCCAGCGCGGCGAACGTCTGGATGCGCTCCAGGATAAGACGGACAATTTGGCCGTTTCGGCCCAGGGATTTCGT CGTGGTGCCAACCGGGTCCGCAAGCAGATGTGGTGGAAGGACATGAAGATGCGCATGTGCCTGATCGCGGGCATC ATCATCCTACTACTCATCATCATCATCCCCACCGTCGTCGCTACCCGTTAA |
| Gene | >Hirsu2|2500 ATGCCTGAGCAGGACGCCCCGTACGATCCCTACATCCCCAGCGGCCAGGCCGGCGCGCAACAAGGTGCCGGCGGC AATGCCAGGACCCAGGCTCTCCAAGCGGTAGGTCTCTCGTGCCACCTTGTCCCCCCGTCCATGGTTTTCGCCATG TGCTCTACCGGATGGTCCTGCACCAACGCCGCCGACCGTCTCGGGGACGCCTGCGGGAACGCCTGCACAAGGGCT CGCAGAGCCGCGGGCTCTCGCCGTGACAGCCTTGCGACAACGACCAGTGGATCGTTTGCCGATTCCTCAGGCGAG AGGGGAATTTTTTTTGGGTCGTCGCGCGGATGGTGGTTGAGGAGGAGAAGGATGAGAACAGACAATGCGACAGTC TGAGTCGACACAGGAGACCCAAGTCGACTGGACGGCTGTCCTTACGATTCTGATGATTTTCCTTGTCCAAATGGG GTGATGCATGCCCAACGAGCCACACACGCGCGGTGAAACGCTGTTCAGCAACGATGCGCGCAAACAGACTACGGC AGCGGACGCTGATGCTGACGTGTTCTGTGTAGCAAATCGACGACACCGTCGGTGTGATGCGCGACAACATCAACA AGGTCTCCCAGCGCGGCGAACGTCTGGATGCGCTCCAGGATAAGACGGACAATTTGGCCGTTTCGGCCCAGGGAT TTCGTCGTGGTGCCAACCGGGTCCGCAAGCAGATGTGGTGGAAGGACATGAAGATGCGCATGTGCCTGATCGCGG GCATCATCATCCTACTACTCATCATCATCATCCCCACCGGTGAGGATGCTCCGTCCCCTTGTCCCGCCGTCGAGC GGTCGCTAATGCCTCCGCCGCAGTCGTCGCTACCCGTTAA |