Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2496
Gene name
LocationContig_16:32448..33540
Strand-
Gene length (bp)1092
Transcript length (bp)957
Coding sequence length (bp)957
Protein length (aa) 319

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-13 89 158

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio GN=rnps1 PE=2 SV=1 82 168 3.0E-14
sp|Q9SEE9|SR45_ARATH Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana GN=SR45 PE=1 SV=1 91 174 3.0E-14
sp|Q28E41|RNPS1_XENTR RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis GN=rnps1 PE=2 SV=1 82 164 1.0E-13
sp|Q3KPW1|RNP1B_XENLA RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis GN=rnps1-b PE=2 SV=1 82 164 2.0E-13
sp|Q5XG24|RNP1A_XENLA RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis GN=rnps1-a PE=2 SV=1 82 164 2.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio GN=rnps1 PE=2 SV=1 82 168 3.0E-14
sp|Q9SEE9|SR45_ARATH Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana GN=SR45 PE=1 SV=1 91 174 3.0E-14
sp|Q28E41|RNPS1_XENTR RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis GN=rnps1 PE=2 SV=1 82 164 1.0E-13
sp|Q3KPW1|RNP1B_XENLA RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis GN=rnps1-b PE=2 SV=1 82 164 2.0E-13
sp|Q5XG24|RNP1A_XENLA RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis GN=rnps1-a PE=2 SV=1 82 164 2.0E-13
sp|Q5NVM8|RNPS1_PONAB RNA-binding protein with serine-rich domain 1 OS=Pongo abelii GN=RNPS1 PE=2 SV=1 82 164 3.0E-13
sp|Q99M28|RNPS1_MOUSE RNA-binding protein with serine-rich domain 1 OS=Mus musculus GN=Rnps1 PE=2 SV=1 82 164 3.0E-13
sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1 OS=Macaca fascicularis GN=RNPS1 PE=2 SV=1 82 164 3.0E-13
sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 OS=Homo sapiens GN=RNPS1 PE=1 SV=1 82 164 3.0E-13
sp|A6QR16|RNPS1_BOVIN RNA-binding protein with serine-rich domain 1 OS=Bos taurus GN=RNPS1 PE=2 SV=1 82 164 3.0E-13
sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1 OS=Rattus norvegicus GN=Rnps1 PE=2 SV=1 82 164 3.0E-13
sp|Q1MTR2|RNPS1_SCHPO RNA-binding protein with serine-rich domain 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.14c PE=3 SV=2 82 162 2.0E-12
sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10 PE=1 SV=2 84 182 3.0E-09
sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10 PE=1 SV=1 84 182 3.0E-09
sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1 79 175 4.0E-09
sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1 79 175 4.0E-09
sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 83 175 2.0E-08
sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 83 175 2.0E-08
sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 83 175 2.0E-08
sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 83 175 2.0E-08
sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1 84 163 6.0E-08
sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus GN=Rbmxl1 PE=2 SV=1 88 160 2.0E-07
sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1 88 160 3.0E-07
sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1 88 160 3.0E-07
sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX PE=2 SV=1 88 160 3.0E-07
sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX PE=1 SV=3 88 160 3.0E-07
sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1 88 160 3.0E-07
sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2 88 160 5.0E-07
sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster GN=tra2 PE=1 SV=1 71 173 5.0E-07
sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus norvegicus GN=Rbmxrtl PE=1 SV=1 88 160 5.0E-07
sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1 88 161 8.0E-07
sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens GN=RBMXL1 PE=1 SV=1 88 160 8.0E-07
sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus GN=Rbmxl1 PE=3 SV=1 88 160 9.0E-07
sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=3 88 160 1.0E-06
sp|O22703|RZ1B_ARATH Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 87 166 3.0E-06
sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens GN=RBMXL3 PE=2 SV=2 88 164 4.0E-06
sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1 79 163 4.0E-06
sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=3 SV=1 88 164 4.0E-06
sp|Q8L773|THO4A_ARATH THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 33 163 5.0E-06
sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2 PE=3 SV=1 85 173 7.0E-06
sp|Q9LIN3|RZ1A_ARATH Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1 83 165 9.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3341 0.8968 0.0109 0.0523 0.0802 0.0104 0.0309 0.0139 0.0025 0.0005

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5015
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7837
Ophiocordyceps australis map64 (Brazil) OphauB2|6471
Ophiocordyceps camponoti-floridani Ophcf2|00993
Ophiocordyceps camponoti-rufipedis Ophun1|300
Ophiocordyceps kimflemingae Ophio5|4552
Ophiocordyceps subramaniannii Hirsu2|2496 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2496
MDSHSRSPSRLRYRSPTRSPTPPSYDGRSPDRRRRYDSRSPSRSPPPPPPPPPPRRNGRYHSESRSWSRGRGRDS
QEPSEGPPPPGTKVVVERLTKNIREAHLREIFGRYGPLQDLDLPINRAFGTNRGTAYILYEHREDAEEAVANMHE
GQLDGAVINVSIVLPRRMFSPEPPLARRGANIDPRVPPAGPRGGRGHRGYHMSGGPGRHRPSPPGRYASRPYPYH
QAPPSRSRSRSPYRSPPPMRGFRSRGGGSSGGGGRGGARRRSPDSYSSRSRSRSPPPRRSGGGRFDEPPRRRSRS
VDSYGGRNRSVSPGRAWR*
Coding >Hirsu2|2496
ATGGATTCGCACTCTCGCTCGCCGTCGCGCCTTCGCTACCGCTCCCCGACTCGCTCCCCGACGCCGCCGTCTTAC
GACGGCCGCTCGCCCGACCGCCGTCGTCGCTACGACTCGCGTTCCCCGTCGCGATCGCCGCCGCCGCCGCCGCCG
CCACCGCCGCCGCGCCGCAACGGGCGTTACCATAGCGAGAGCCGCAGCTGGAGCCGTGGCCGGGGCAGAGACAGC
CAGGAGCCCAGCGAGGGCCCGCCTCCTCCGGGCACCAAGGTCGTCGTCGAGCGCCTGACGAAGAACATCCGAGAG
GCCCATCTGCGCGAGATTTTCGGCCGCTATGGCCCCCTTCAGGATCTCGATCTCCCCATCAATAGGGCCTTCGGC
ACCAACCGCGGCACGGCCTACATCTTGTACGAGCATCGCGAGGATGCCGAGGAAGCCGTTGCGAACATGCACGAA
GGCCAGCTGGACGGGGCCGTCATCAACGTCTCCATCGTCCTGCCGCGACGCATGTTTTCTCCCGAACCGCCCTTG
GCGCGGCGTGGCGCCAACATTGATCCTCGCGTCCCCCCGGCCGGCCCCCGCGGAGGTCGCGGCCACCGCGGCTAT
CACATGTCTGGCGGCCCCGGCCGCCACCGTCCCTCGCCACCGGGTCGTTACGCCTCTCGACCCTACCCCTACCAC
CAAGCCCCCCCTTCGCGCTCCCGCTCCCGCTCGCCCTACCGGTCCCCACCTCCCATGAGAGGCTTCCGGTCTCGC
GGCGGTGGCAGCAGCGGTGGCGGAGGCAGAGGCGGAGCGCGACGCCGCTCGCCCGATTCCTACTCGTCGCGGTCG
AGATCCCGGTCGCCCCCTCCCCGACGGAGCGGCGGAGGCCGGTTCGACGAGCCCCCGCGGCGACGCAGCCGTAGC
GTCGACAGCTATGGCGGCCGGAACCGGTCCGTCAGCCCCGGACGAGCCTGGCGTTGA
Transcript >Hirsu2|2496
ATGGATTCGCACTCTCGCTCGCCGTCGCGCCTTCGCTACCGCTCCCCGACTCGCTCCCCGACGCCGCCGTCTTAC
GACGGCCGCTCGCCCGACCGCCGTCGTCGCTACGACTCGCGTTCCCCGTCGCGATCGCCGCCGCCGCCGCCGCCG
CCACCGCCGCCGCGCCGCAACGGGCGTTACCATAGCGAGAGCCGCAGCTGGAGCCGTGGCCGGGGCAGAGACAGC
CAGGAGCCCAGCGAGGGCCCGCCTCCTCCGGGCACCAAGGTCGTCGTCGAGCGCCTGACGAAGAACATCCGAGAG
GCCCATCTGCGCGAGATTTTCGGCCGCTATGGCCCCCTTCAGGATCTCGATCTCCCCATCAATAGGGCCTTCGGC
ACCAACCGCGGCACGGCCTACATCTTGTACGAGCATCGCGAGGATGCCGAGGAAGCCGTTGCGAACATGCACGAA
GGCCAGCTGGACGGGGCCGTCATCAACGTCTCCATCGTCCTGCCGCGACGCATGTTTTCTCCCGAACCGCCCTTG
GCGCGGCGTGGCGCCAACATTGATCCTCGCGTCCCCCCGGCCGGCCCCCGCGGAGGTCGCGGCCACCGCGGCTAT
CACATGTCTGGCGGCCCCGGCCGCCACCGTCCCTCGCCACCGGGTCGTTACGCCTCTCGACCCTACCCCTACCAC
CAAGCCCCCCCTTCGCGCTCCCGCTCCCGCTCGCCCTACCGGTCCCCACCTCCCATGAGAGGCTTCCGGTCTCGC
GGCGGTGGCAGCAGCGGTGGCGGAGGCAGAGGCGGAGCGCGACGCCGCTCGCCCGATTCCTACTCGTCGCGGTCG
AGATCCCGGTCGCCCCCTCCCCGACGGAGCGGCGGAGGCCGGTTCGACGAGCCCCCGCGGCGACGCAGCCGTAGC
GTCGACAGCTATGGCGGCCGGAACCGGTCCGTCAGCCCCGGACGAGCCTGGCGTTGA
Gene >Hirsu2|2496
ATGGATTCGCACTCTCGCTCGCCGTCGCGCCTTCGCTACCGCTCCCCGACTCGCTCCCCGACGCCGCCGTCTTAC
GACGGCCGCTCGCCCGACCGCCGTCGTCGCTACGACTCGCGTTCCCCGTCGCGATCGCCGCCGCCGCCGCCGCCG
CCACCGCCGCCGCGCCGCAACGGGCGTTACCATAGCGAGAGCCGCAGCTGGAGCCGTGGCCGGGGCAGAGACAGC
CAGGAGCCCAGCGAGGGCCCGCCTCCTCCGGGCACCAAGGTCCGTCTTGCTCCGACTTCTCCTTCTCGTTCAAGC
GTCGAGGCCGTCTGCTAACCAGCGCGTGCTCTAGGTCGTCGTCGAGCGCCTGACGAAGAACATCCGAGAGGCCCA
TCTGCGCGAGATTTTCGGCCGCTATGGCCCCCTTCAGGATCTCGATCTCCCCATCAATAGGGCCTGTAAGCTCAC
CGTCCGACCCTTGACGCTCGGGACAAGTCTTGCTTAAGCGTTGCCTCGACCGCAGTCGGCACCAACCGCGGCACG
GCCTACATCTTGTACGAGCATCGCGAGGATGCCGAGGAAGCCGTTGCGAACATGCACGAAGGCCAGCTGGACGGG
GCCGTCATCAACGTCTCCATCGTCCTGCCGCGACGCATGTTTTCTCCCGAACCGCCCTTGGCGCGGCGTGGCGCC
AACATTGATCCTCGCGTCCCCCCGGCCGGCCCCCGCGGAGGTCGCGGCCACCGCGGCTATCACATGTCTGGCGGC
CCCGGCCGCCACCGTCCCTCGCCACCGGGTCGTTACGCCTCTCGACCCTACCCCTACCACCAAGCCCCCCCTTCG
CGCTCCCGCTCCCGCTCGCCCTACCGGTCCCCACCTCCCATGAGAGGCTTCCGGTCTCGCGGCGGTGGCAGCAGC
GGTGGCGGAGGCAGAGGCGGAGCGCGACGCCGCTCGCCCGATTCCTACTCGTCGCGGTCGAGATCCCGGTCGCCC
CCTCCCCGACGGAGCGGCGGAGGCCGGTTCGACGAGCCCCCGCGGCGACGCAGCCGTAGCGTCGACAGCTATGGC
GGCCGGAACCGGTCCGTCAGCCCCGGACGAGCCTGGCGTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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