© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|249 |
| Gene name | |
| Location | Contig_1045:973..1741 |
| Strand | - |
| Gene length (bp) | 768 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 696 |
| Protein length (aa) | 232 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5058 | 0.4908 | 0.334 | 0.0658 | 0.1925 | 0.2343 | 0.271 | 0.1596 | 0.1921 | 0.0497 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 198 | 220 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 9080 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|249 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|249 MPSPVSSSLPMQGPTLHGRRNPRSWFLPAVNDFIFHLLYCLFPPPPPSAAPPPFHSRRSTLLSLLSLFFPPPFPP PPPPPPPLARSSAEAATPASSSSSSSPSKTLHSPHACPEGTASSAHRRRPRRRRARNAASRFLSRRRPANISLGP RSLPVLLPRDTRAGTLPSVRPAPGRAGTASLALRPPVAGSHLAYKSDLVLAVSLSLCLSLSLSLFLSLPLRTSNW NRLSLA* |
| Coding | >Hirsu2|249 ATGCCAAGCCCCGTGTCGTCATCGCTCCCGATGCAGGGCCCCACGCTCCACGGCAGACGTAACCCGAGAAGCTGG TTTCTCCCAGCCGTGAATGATTTTATTTTCCATCTTTTGTACTGCCTTTTCCCCCCTCCACCCCCTTCCGCTGCC CCCCCGCCTTTCCACTCCCGCCGCTCTACTCTTCTTTCTCTCCTTTCGCTTTTCTTCCCTCCTCCTTTCCCTCCT CCTCCTCCTCCTCCTCCTCCTCTCGCCAGATCCTCCGCCGAAGCCGCGACCCCTGCTTCGTCGTCGTCGTCGTCG TCGCCAAGCAAGACCCTTCATTCGCCACACGCCTGTCCGGAGGGCACGGCTTCGTCCGCCCATCGCCGCCGACCT CGCCGCCGGCGTGCGCGCAACGCCGCCTCTCGCTTCCTGTCCCGACGACGTCCTGCCAACATCTCCCTCGGGCCT CGTTCGCTTCCGGTCCTGCTCCCGCGAGACACTCGAGCCGGTACGCTGCCATCCGTCCGCCCGGCACCTGGCCGG GCCGGGACCGCTTCCCTCGCCCTGCGCCCTCCTGTCGCGGGCAGTCATCTGGCCTACAAGTCTGACCTCGTCCTC GCAGTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTGCGCACCTCGAACTGG AACCGCCTCTCGCTAGCCTAG |
| Transcript | >Hirsu2|249 ATGCCAAGCCCCGTGTCGTCATCGCTCCCGATGCAGGGCCCCACGCTCCACGGCAGACGTAACCCGAGAAGCTGG TTTCTCCCAGCCGTGAATGATTTTATTTTCCATCTTTTGTACTGCCTTTTCCCCCCTCCACCCCCTTCCGCTGCC CCCCCGCCTTTCCACTCCCGCCGCTCTACTCTTCTTTCTCTCCTTTCGCTTTTCTTCCCTCCTCCTTTCCCTCCT CCTCCTCCTCCTCCTCCTCCTCTCGCCAGATCCTCCGCCGAAGCCGCGACCCCTGCTTCGTCGTCGTCGTCGTCG TCGCCAAGCAAGACCCTTCATTCGCCACACGCCTGTCCGGAGGGCACGGCTTCGTCCGCCCATCGCCGCCGACCT CGCCGCCGGCGTGCGCGCAACGCCGCCTCTCGCTTCCTGTCCCGACGACGTCCTGCCAACATCTCCCTCGGGCCT CGTTCGCTTCCGGTCCTGCTCCCGCGAGACACTCGAGCCGGTACGCTGCCATCCGTCCGCCCGGCACCTGGCCGG GCCGGGACCGCTTCCCTCGCCCTGCGCCCTCCTGTCGCGGGCAGTCATCTGGCCTACAAGTCTGACCTCGTCCTC GCAGTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTGCGCACCTCGAACTGG AACCGCCTCTCGCTAGCCTAG |
| Gene | >Hirsu2|249 ATGCCAAGCCCCGTGTCGTCATCGCTCCCGATGCAGGGCCCCACGCTCCACGGCAGACGTAACCCGAGAAGCTGG TTTCTCCCAGCCGTGAATGATTTTATTTTCCATCTTGTTAGCGTCCGCCCACTTCCTCGCTGCTCGAGCTCATGT CACCACCCGCCTCACATCGGCCTCATAAGATAGTTGTACTGCCTTTTCCCCCCTCCACCCCCTTCCGCTGCCCCC CCGCCTTTCCACTCCCGCCGCTCTACTCTTCTTTCTCTCCTTTCGCTTTTCTTCCCTCCTCCTTTCCCTCCTCCT CCTCCTCCTCCTCCTCCTCTCGCCAGATCCTCCGCCGAAGCCGCGACCCCTGCTTCGTCGTCGTCGTCGTCGTCG CCAAGCAAGACCCTTCATTCGCCACACGCCTGTCCGGAGGGCACGGCTTCGTCCGCCCATCGCCGCCGACCTCGC CGCCGGCGTGCGCGCAACGCCGCCTCTCGCTTCCTGTCCCGACGACGTCCTGCCAACATCTCCCTCGGGCCTCGT TCGCTTCCGGTCCTGCTCCCGCGAGACACTCGAGCCGGTACGCTGCCATCCGTCCGCCCGGCACCTGGCCGGGCC GGGACCGCTTCCCTCGCCCTGCGCCCTCCTGTCGCGGGCAGTCATCTGGCCTACAAGTCTGACCTCGTCCTCGCA GTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTGCGCACCTCGAACTGGAAC CGCCTCTCGCTAGCCTAG |