Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2484
Gene name
LocationContig_1598:3058..3645
Strand+
Gene length (bp)587
Transcript length (bp)516
Coding sequence length (bp)516
Protein length (aa) 172

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.473 0.6074 0.0371 0.2086 0.3578 0.0057 0.0372 0.2246 0.0181 0.0034

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1171
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis map64 (Brazil) OphauB2|6421
Ophiocordyceps subramaniannii Hirsu2|1028
Ophiocordyceps subramaniannii Hirsu2|1029
Ophiocordyceps subramaniannii Hirsu2|2484 (this protein)
Ophiocordyceps subramaniannii Hirsu2|2485
Ophiocordyceps subramaniannii Hirsu2|6060

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2484
MSGWDKTPPEIREQILELAAEGHSFATDGLARAGHAIVCKDWWRVFEPHNFREIRLDRTRIAAFRQLFTGANERR
QAWLRQITLAVILPEYQCDDCEADEGSSLRRAHDRLLTETLWDLLIILSSWNRPRLGPKPKLVLDLGAYSPSDSQ
HSFRDFRLQDGYPYRTEADLD*
Coding >Hirsu2|2484
ATGTCGGGCTGGGACAAGACGCCTCCCGAGATCCGCGAGCAGATCCTCGAGCTCGCAGCCGAGGGCCACAGCTTC
GCCACGGACGGCCTGGCGCGGGCAGGCCACGCAATCGTGTGCAAGGACTGGTGGCGCGTCTTTGAGCCGCACAAC
TTCCGCGAGATCAGGCTCGACCGGACGCGCATCGCCGCCTTTCGTCAGCTCTTCACCGGCGCCAACGAGCGGCGC
CAAGCATGGCTGCGCCAGATCACGCTGGCTGTCATCCTTCCCGAGTACCAGTGCGACGATTGCGAGGCAGACGAG
GGATCCTCGTTGAGAAGAGCGCACGACAGACTCCTCACCGAGACGCTCTGGGACCTTCTGATCATCCTTTCCAGC
TGGAATCGGCCCAGGTTGGGCCCGAAGCCGAAACTGGTCCTCGACTTGGGCGCGTACTCACCCAGCGACTCGCAG
CACTCCTTCCGCGACTTTCGCTTACAAGACGGCTATCCGTACAGGACCGAGGCGGATTTGGACTAG
Transcript >Hirsu2|2484
ATGTCGGGCTGGGACAAGACGCCTCCCGAGATCCGCGAGCAGATCCTCGAGCTCGCAGCCGAGGGCCACAGCTTC
GCCACGGACGGCCTGGCGCGGGCAGGCCACGCAATCGTGTGCAAGGACTGGTGGCGCGTCTTTGAGCCGCACAAC
TTCCGCGAGATCAGGCTCGACCGGACGCGCATCGCCGCCTTTCGTCAGCTCTTCACCGGCGCCAACGAGCGGCGC
CAAGCATGGCTGCGCCAGATCACGCTGGCTGTCATCCTTCCCGAGTACCAGTGCGACGATTGCGAGGCAGACGAG
GGATCCTCGTTGAGAAGAGCGCACGACAGACTCCTCACCGAGACGCTCTGGGACCTTCTGATCATCCTTTCCAGC
TGGAATCGGCCCAGGTTGGGCCCGAAGCCGAAACTGGTCCTCGACTTGGGCGCGTACTCACCCAGCGACTCGCAG
CACTCCTTCCGCGACTTTCGCTTACAAGACGGCTATCCGTACAGGACCGAGGCGGATTTGGACTAG
Gene >Hirsu2|2484
ATGTCGGGCTGGGACAAGACGCCTCCCGAGATCCGCGAGCAGATCCTCGAGCTCGCAGCCGAGGGCCACAGCTTC
GCCACGGACGGCCTGGCGCGGGCAGGCCACGCAATCGTGTGCAAGGACTGGTGGCGCGTCTTTGAGCCGCACAAC
TTCCGCGAGATCAGGCTCGACCGGACGCGCATCGCCGCCTTTCGTCAGCTCTTCACCGGCGCCAACGAGCGGCGC
CAAGCATGGCTGCGCCAGATCACGCTGGCTGTCATCCTTCCCGAGTACCAGTGCGACGATTGCGAGGCAGACGAG
GGATCCTCGTTGAGAAGAGCGTGAGCACTTGGCCTCCTTCCTGCTCCAGTGTCTCCCGACTCTGGCTCGACGCTG
ACGGGATCATCTGCAGGCACGACAGACTCCTCACCGAGACGCTCTGGGACCTTCTGATCATCCTTTCCAGCTGGA
ATCGGCCCAGGTTGGGCCCGAAGCCGAAACTGGTCCTCGACTTGGGCGCGTACTCACCCAGCGACTCGCAGCACT
CCTTCCGCGACTTTCGCTTACAAGACGGCTATCCGTACAGGACCGAGGCGGATTTGGACTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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