Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2481
Gene name
LocationContig_1598:12..234
Strand+
Gene length (bp)222
Transcript length (bp)222
Coding sequence length (bp)222
Protein length (aa) 74

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05794 Tcp11 T-complex protein 11 1.0E-07 5 58

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6817 0.3364 0.1675 0.1762 0.2291 0.0295 0.1002 0.1882 0.2015 0.0188

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7522
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2481 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2481
LAPGSASDKVRTANAAGERLASLGLAEFVDKVRHISDLLRTVGAVDQAAHGSWWEAVAAAVQRQDDEAAAAQA*
Coding >Hirsu2|2481
CTGGCGCCCGGGTCGGCGAGCGACAAGGTGCGGACGGCCAACGCGGCGGGCGAGCGGCTGGCGAGCCTGGGCCTG
GCCGAGTTCGTCGACAAGGTGCGCCACATCTCGGACCTGCTGCGCACCGTCGGCGCCGTCGACCAGGCCGCCCAC
GGCAGCTGGTGGGAGGCGGTGGCGGCGGCGGTGCAGCGGCAGGACGACGAGGCGGCGGCGGCGCAGGCGTGA
Transcript >Hirsu2|2481
CTGGCGCCCGGGTCGGCGAGCGACAAGGTGCGGACGGCCAACGCGGCGGGCGAGCGGCTGGCGAGCCTGGGCCTG
GCCGAGTTCGTCGACAAGGTGCGCCACATCTCGGACCTGCTGCGCACCGTCGGCGCCGTCGACCAGGCCGCCCAC
GGCAGCTGGTGGGAGGCGGTGGCGGCGGCGGTGCAGCGGCAGGACGACGAGGCGGCGGCGGCGCAGGCGTGA
Gene >Hirsu2|2481
CTGGCGCCCGGGTCGGCGAGCGACAAGGTGCGGACGGCCAACGCGGCGGGCGAGCGGCTGGCGAGCCTGGGCCTG
GCCGAGTTCGTCGACAAGGTGCGCCACATCTCGGACCTGCTGCGCACCGTCGGCGCCGTCGACCAGGCCGCCCAC
GGCAGCTGGTGGGAGGCGGTGGCGGCGGCGGTGCAGCGGCAGGACGACGAGGCGGCGGCGGCGCAGGCGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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