Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|247
Gene name
LocationContig_1044:9033..9303
Strand+
Gene length (bp)270
Transcript length (bp)270
Coding sequence length (bp)270
Protein length (aa) 90

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Endoplasmic reticulum Signal peptide|Transmembrane domain 0.2635 0.208 0.2941 0.3982 0.2941 0.0209 0.4977 0.3623 0.3027 0.0116

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 4 26 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9074
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|247 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|247
MGDLIFQVAVLTAFFFAFVFMAVRLFAHYRNQRRLTARGSPERGRRSYERDRWEPSEQESSGHVSLEEAPERPAA
AKIRERRGGTVECA*
Coding >Hirsu2|247
ATGGGCGACCTTATCTTCCAGGTGGCCGTGCTCACCGCCTTCTTCTTCGCATTCGTCTTCATGGCGGTCCGGCTC
TTCGCACACTACCGGAACCAGCGCAGGCTTACGGCTCGTGGATCTCCAGAACGGGGACGGAGGAGCTACGAGCGG
GACAGGTGGGAGCCGAGTGAGCAGGAGAGCAGTGGACACGTCTCCCTCGAAGAGGCGCCGGAGCGGCCCGCCGCG
GCCAAGATCCGGGAGAGGCGCGGGGGCACTGTGGAGTGCGCCTGA
Transcript >Hirsu2|247
ATGGGCGACCTTATCTTCCAGGTGGCCGTGCTCACCGCCTTCTTCTTCGCATTCGTCTTCATGGCGGTCCGGCTC
TTCGCACACTACCGGAACCAGCGCAGGCTTACGGCTCGTGGATCTCCAGAACGGGGACGGAGGAGCTACGAGCGG
GACAGGTGGGAGCCGAGTGAGCAGGAGAGCAGTGGACACGTCTCCCTCGAAGAGGCGCCGGAGCGGCCCGCCGCG
GCCAAGATCCGGGAGAGGCGCGGGGGCACTGTGGAGTGCGCCTGA
Gene >Hirsu2|247
ATGGGCGACCTTATCTTCCAGGTGGCCGTGCTCACCGCCTTCTTCTTCGCATTCGTCTTCATGGCGGTCCGGCTC
TTCGCACACTACCGGAACCAGCGCAGGCTTACGGCTCGTGGATCTCCAGAACGGGGACGGAGGAGCTACGAGCGG
GACAGGTGGGAGCCGAGTGAGCAGGAGAGCAGTGGACACGTCTCCCTCGAAGAGGCGCCGGAGCGGCCCGCCGCG
GCCAAGATCCGGGAGAGGCGCGGGGGCACTGTGGAGTGCGCCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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