Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2463
Gene name
LocationContig_159:29654..30371
Strand+
Gene length (bp)717
Transcript length (bp)717
Coding sequence length (bp)717
Protein length (aa) 239

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.4585 0.4002 0.5145 0.0838 0.3028 0.3186 0.4074 0.2914 0.3236 0.1863

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 49 71 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9072
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2463 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2463
MQAVPDAQSFLPPGSRLALAAGSTSGALTLTCALWSLPFFFFAACRGRGPRLLSLPAAALLCLGFCLASPGRERD
AVGATRHRYKKLVRAVAESAVSRRPSLSPPLPLLRRASPVAVLHVLLPVGRAIGRRRSRPLDLATLVSGLPWPSR
AVVWIRHPCRAATSISRRPSARRRPLSASCRRKGLDLSLLRRLVLPLFDPAVLIPLEATLAGLIHTNETSTPLRP
STHSSSPAHLRQA*
Coding >Hirsu2|2463
ATGCAGGCAGTCCCAGACGCCCAGTCGTTCCTCCCACCAGGTTCTCGCTTGGCTCTTGCCGCTGGCTCGACCTCT
GGCGCGCTCACGCTCACGTGCGCCCTTTGGTCTCTGCCCTTCTTTTTCTTTGCTGCTTGTCGTGGCCGAGGCCCT
CGTCTTCTCTCTCTGCCTGCAGCCGCCCTGCTTTGCCTTGGCTTTTGCCTTGCCTCTCCGGGACGCGAACGAGAC
GCCGTGGGCGCGACGCGCCACCGCTACAAAAAGCTCGTCCGGGCCGTGGCCGAGTCTGCCGTCTCTAGGCGCCCC
TCTCTCTCCCCCCCCCTTCCCCTTCTTCGTCGCGCATCTCCCGTCGCCGTCCTCCATGTGCTGCTACCCGTCGGT
CGGGCGATAGGAAGGCGTCGGAGCCGGCCGCTTGACCTCGCCACTCTCGTCTCTGGCTTGCCCTGGCCGAGCCGA
GCCGTCGTCTGGATCCGTCATCCTTGCCGCGCCGCCACGTCTATTTCTCGACGGCCGTCCGCTCGTCGCCGTCCG
CTCAGCGCCTCTTGCCGGCGCAAAGGGCTGGACCTATCTCTTCTTCGACGACTTGTTTTGCCGCTTTTCGACCCG
GCCGTCCTCATCCCTCTCGAGGCGACCTTGGCTGGACTAATTCATACCAACGAAACTTCAACCCCTCTCCGACCA
TCCACCCATTCATCTTCTCCTGCCCACCTCCGGCAGGCCTGA
Transcript >Hirsu2|2463
ATGCAGGCAGTCCCAGACGCCCAGTCGTTCCTCCCACCAGGTTCTCGCTTGGCTCTTGCCGCTGGCTCGACCTCT
GGCGCGCTCACGCTCACGTGCGCCCTTTGGTCTCTGCCCTTCTTTTTCTTTGCTGCTTGTCGTGGCCGAGGCCCT
CGTCTTCTCTCTCTGCCTGCAGCCGCCCTGCTTTGCCTTGGCTTTTGCCTTGCCTCTCCGGGACGCGAACGAGAC
GCCGTGGGCGCGACGCGCCACCGCTACAAAAAGCTCGTCCGGGCCGTGGCCGAGTCTGCCGTCTCTAGGCGCCCC
TCTCTCTCCCCCCCCCTTCCCCTTCTTCGTCGCGCATCTCCCGTCGCCGTCCTCCATGTGCTGCTACCCGTCGGT
CGGGCGATAGGAAGGCGTCGGAGCCGGCCGCTTGACCTCGCCACTCTCGTCTCTGGCTTGCCCTGGCCGAGCCGA
GCCGTCGTCTGGATCCGTCATCCTTGCCGCGCCGCCACGTCTATTTCTCGACGGCCGTCCGCTCGTCGCCGTCCG
CTCAGCGCCTCTTGCCGGCGCAAAGGGCTGGACCTATCTCTTCTTCGACGACTTGTTTTGCCGCTTTTCGACCCG
GCCGTCCTCATCCCTCTCGAGGCGACCTTGGCTGGACTAATTCATACCAACGAAACTTCAACCCCTCTCCGACCA
TCCACCCATTCATCTTCTCCTGCCCACCTCCGGCAGGCCTGA
Gene >Hirsu2|2463
ATGCAGGCAGTCCCAGACGCCCAGTCGTTCCTCCCACCAGGTTCTCGCTTGGCTCTTGCCGCTGGCTCGACCTCT
GGCGCGCTCACGCTCACGTGCGCCCTTTGGTCTCTGCCCTTCTTTTTCTTTGCTGCTTGTCGTGGCCGAGGCCCT
CGTCTTCTCTCTCTGCCTGCAGCCGCCCTGCTTTGCCTTGGCTTTTGCCTTGCCTCTCCGGGACGCGAACGAGAC
GCCGTGGGCGCGACGCGCCACCGCTACAAAAAGCTCGTCCGGGCCGTGGCCGAGTCTGCCGTCTCTAGGCGCCCC
TCTCTCTCCCCCCCCCTTCCCCTTCTTCGTCGCGCATCTCCCGTCGCCGTCCTCCATGTGCTGCTACCCGTCGGT
CGGGCGATAGGAAGGCGTCGGAGCCGGCCGCTTGACCTCGCCACTCTCGTCTCTGGCTTGCCCTGGCCGAGCCGA
GCCGTCGTCTGGATCCGTCATCCTTGCCGCGCCGCCACGTCTATTTCTCGACGGCCGTCCGCTCGTCGCCGTCCG
CTCAGCGCCTCTTGCCGGCGCAAAGGGCTGGACCTATCTCTTCTTCGACGACTTGTTTTGCCGCTTTTCGACCCG
GCCGTCCTCATCCCTCTCGAGGCGACCTTGGCTGGACTAATTCATACCAACGAAACTTCAACCCCTCTCCGACCA
TCCACCCATTCATCTTCTCCTGCCCACCTCCGGCAGGCCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail