Protein ID | Hirsu2|2461 |
Gene name | |
Location | Contig_159:14436..15673 |
Strand | - |
Gene length (bp) | 1237 |
Transcript length (bp) | 1086 |
Coding sequence length (bp) | 1086 |
Protein length (aa) | 362 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11911 | DUF3429 | Protein of unknown function (DUF3429) | 1.8E-43 | 123 | 286 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Mitochondrion | Mitochondrial transit peptide | 0.0677 | 0.0985 | 0.0227 | 0.074 | 0.9412 | 0.0789 | 0.08 | 0.0584 | 0.1604 | 0.0131 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 128 | 150 | 22 |
2 | 183 | 205 | 22 |
3 | 218 | 240 | 22 |
4 | 266 | 288 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2094 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2461 MFRAARPLLRLTARTSANPLPLRTCSPVLRRPGAPWRPVLATPSLAARSSATAPPPKQPIDHEHEKQVAQQSIEA RPGEVSSQSSVRHVMEGSSSSARDDPSLSRGVKHDIEVFRDTFRLSAVPRESHILGLAGTLPYLATSLSTIFLAW DLTKQLPTGNALYDAVFIDHQTARHLLGVIEPLQLGYGAVIISFLGAIHWGLEYAEKKPSPKRTRFRYGVGLAAS AVAWPTLYMPLEYALTTQFMAFVALYFVDSRCASRGLAPPWYGTYRFLLTAMVGFAILLSLVARAKISTHGRLSS QGLSSSMANPGIADNETDWAKLEAEDMAQARREKAEAEKKKKEEERKKKSGDGKKADGDKK* |
Coding | >Hirsu2|2461 ATGTTCCGAGCGGCCCGTCCTCTGCTTCGCCTCACGGCGCGAACGTCGGCCAACCCGCTCCCCCTGCGCACATGC TCTCCGGTCCTGCGCCGGCCCGGCGCCCCGTGGCGGCCCGTGTTGGCGACGCCCTCGCTCGCGGCCCGCTCCTCG GCGACGGCCCCGCCGCCCAAGCAGCCGATTGACCACGAGCACGAGAAGCAAGTGGCGCAGCAGTCCATCGAGGCC CGCCCCGGCGAGGTCTCGTCGCAAAGCTCGGTGCGCCATGTCATGGAGGGCTCCTCCTCGTCCGCCCGAGACGAC CCGAGCCTCAGTCGCGGAGTGAAGCACGACATTGAGGTCTTCCGAGACACGTTCCGCCTGTCCGCCGTCCCGCGC GAATCCCACATCCTCGGCCTCGCCGGCACGCTGCCCTACCTGGCCACGTCCCTGTCGACCATCTTCCTGGCCTGG GACCTGACCAAGCAGCTGCCGACGGGCAACGCGCTGTACGACGCCGTCTTCATCGACCATCAGACGGCCCGACAC CTCCTCGGCGTCATCGAGCCGCTGCAGCTCGGCTACGGCGCCGTCATCATCTCCTTCCTCGGCGCGATACACTGG GGACTCGAGTACGCGGAGAAGAAGCCGTCGCCGAAGCGGACGCGCTTCCGCTACGGCGTCGGCCTGGCCGCCTCG GCCGTCGCCTGGCCCACGCTGTACATGCCGCTCGAATACGCGCTGACGACGCAGTTCATGGCCTTTGTCGCCCTC TACTTCGTCGACTCGCGCTGCGCCTCGCGCGGCCTGGCCCCGCCCTGGTACGGCACCTACCGCTTCCTGCTGACC GCCATGGTCGGCTTCGCCATCCTCCTCTCGCTCGTCGCCCGCGCCAAGATCAGCACCCACGGCCGCCTCAGCTCC CAGGGCCTGAGCTCCAGCATGGCCAACCCGGGCATCGCCGACAACGAGACCGACTGGGCCAAGCTCGAGGCCGAG GATATGGCCCAGGCCAGGAGGGAGAAGGCCGAGGCCGAGAAGAAGAAGAAGGAGGAGGAGAGGAAGAAGAAGTCC GGCGACGGCAAGAAGGCCGACGGAGACAAGAAATAG |
Transcript | >Hirsu2|2461 ATGTTCCGAGCGGCCCGTCCTCTGCTTCGCCTCACGGCGCGAACGTCGGCCAACCCGCTCCCCCTGCGCACATGC TCTCCGGTCCTGCGCCGGCCCGGCGCCCCGTGGCGGCCCGTGTTGGCGACGCCCTCGCTCGCGGCCCGCTCCTCG GCGACGGCCCCGCCGCCCAAGCAGCCGATTGACCACGAGCACGAGAAGCAAGTGGCGCAGCAGTCCATCGAGGCC CGCCCCGGCGAGGTCTCGTCGCAAAGCTCGGTGCGCCATGTCATGGAGGGCTCCTCCTCGTCCGCCCGAGACGAC CCGAGCCTCAGTCGCGGAGTGAAGCACGACATTGAGGTCTTCCGAGACACGTTCCGCCTGTCCGCCGTCCCGCGC GAATCCCACATCCTCGGCCTCGCCGGCACGCTGCCCTACCTGGCCACGTCCCTGTCGACCATCTTCCTGGCCTGG GACCTGACCAAGCAGCTGCCGACGGGCAACGCGCTGTACGACGCCGTCTTCATCGACCATCAGACGGCCCGACAC CTCCTCGGCGTCATCGAGCCGCTGCAGCTCGGCTACGGCGCCGTCATCATCTCCTTCCTCGGCGCGATACACTGG GGACTCGAGTACGCGGAGAAGAAGCCGTCGCCGAAGCGGACGCGCTTCCGCTACGGCGTCGGCCTGGCCGCCTCG GCCGTCGCCTGGCCCACGCTGTACATGCCGCTCGAATACGCGCTGACGACGCAGTTCATGGCCTTTGTCGCCCTC TACTTCGTCGACTCGCGCTGCGCCTCGCGCGGCCTGGCCCCGCCCTGGTACGGCACCTACCGCTTCCTGCTGACC GCCATGGTCGGCTTCGCCATCCTCCTCTCGCTCGTCGCCCGCGCCAAGATCAGCACCCACGGCCGCCTCAGCTCC CAGGGCCTGAGCTCCAGCATGGCCAACCCGGGCATCGCCGACAACGAGACCGACTGGGCCAAGCTCGAGGCCGAG GATATGGCCCAGGCCAGGAGGGAGAAGGCCGAGGCCGAGAAGAAGAAGAAGGAGGAGGAGAGGAAGAAGAAGTCC GGCGACGGCAAGAAGGCCGACGGAGACAAGAAATAG |
Gene | >Hirsu2|2461 ATGTTCCGAGCGGCCCGTCCTCTGCTTCGCCTCACGGCGCGAACGTCGGCCAACCCGCTCCCCCTGCGCACATGC TCTCCGGTCCTGCGCCGGCCCGGCGCCCCGTGGCGGCCCGTGTTGGCGACGCCCTCGCTCGCGGCCCGCTCCTCG GCGACGGCCCCGCCGCCCAAGCAGCCGATTGACCACGAGCACGAGAAGCAAGTGGCGCAGCAGTCCATCGAGGCC CGCCCCGGCGAGGTCTCGTCGCAAAGCTCGGTGCGCCATGTCATGGAGGGCTCCTCCTCGTCCGCCCGAGACGAC CCGAGCCTCAGTCGCGGAGTGAAGCACGACATTGTAGGTCTTCCCTCTCCCTGCCGCTGGCGAGAGCAAAGCAGC GCACAGGACTGATGGAGAGGGAACACACACGAAAAAAAAAAACAGGAGGTCTTCCGAGACACGTTCCGCCTGTCC GCCGTCCCGCGCGAATCCCACATCCTCGGCCTCGCCGGCACGCTGCCCTACCTGGCCACGTCCCTGTCGACCATC TTCCTGGCCTGGGACCTGACCAAGCAGCTGCCGACGGGCAACGCGCTGTACGACGCCGTCTTCATCGACCATCAG ACGGCCCGACACCTCCTCGGCGTCATCGAGCCGCTGCAGCTCGGCTACGGCGCCGTCATCATCTCCTTCCTCGGC GCGATACACTGGGTACGGCCCGCGACCCCGAATCGCTGTGGCTGCACCGGCTGACACGCACCCCTCGCCGGCGCA GGGACTCGAGTACGCGGAGAAGAAGCCGTCGCCGAAGCGGACGCGCTTCCGCTACGGCGTCGGCCTGGCCGCCTC GGCCGTCGCCTGGCCCACGCTGTACATGCCGCTCGAATACGCGCTGACGACGCAGTTCATGGCCTTTGTCGCCCT CTACTTCGTCGACTCGCGCTGCGCCTCGCGCGGCCTGGCCCCGCCCTGGTACGGCACCTACCGCTTCCTGCTGAC CGCCATGGTCGGCTTCGCCATCCTCCTCTCGCTCGTCGCCCGCGCCAAGATCAGCACCCACGGCCGCCTCAGCTC CCAGGGCCTGAGCTCCAGCATGGCCAACCCGGGCATCGCCGACAACGAGACCGACTGGGCCAAGCTCGAGGCCGA GGATATGGCCCAGGCCAGGAGGGAGAAGGCCGAGGCCGAGAAGAAGAAGAAGGAGGAGGAGAGGAAGAAGAAGTC CGGCGACGGCAAGAAGGCCGACGGAGACAAGAAATAG |