© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2458 |
| Gene name | |
| Location | Contig_159:3832..4888 |
| Strand | + |
| Gene length (bp) | 1056 |
| Transcript length (bp) | 1056 |
| Coding sequence length (bp) | 1056 |
| Protein length (aa) | 352 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01351 | RNase_HII | Ribonuclease HII | 4.2E-46 | 72 | 293 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P5X8|RNH2A_NEUCR | Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnh-201 PE=3 SV=1 | 15 | 351 | 2.0E-136 |
| sp|Q10236|RNH2A_SCHPO | Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnh201 PE=3 SV=1 | 16 | 344 | 8.0E-79 |
| sp|O75792|RNH2A_HUMAN | Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2 | 69 | 328 | 8.0E-60 |
| sp|Q2TBT5|RNH2A_BOVIN | Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1 | 45 | 318 | 9.0E-60 |
| sp|P53942|RNH2A_YEAST | Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH201 PE=1 SV=1 | 25 | 310 | 4.0E-59 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P5X8|RNH2A_NEUCR | Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnh-201 PE=3 SV=1 | 15 | 351 | 2.0E-136 |
| sp|Q10236|RNH2A_SCHPO | Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnh201 PE=3 SV=1 | 16 | 344 | 8.0E-79 |
| sp|O75792|RNH2A_HUMAN | Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2 | 69 | 328 | 8.0E-60 |
| sp|Q2TBT5|RNH2A_BOVIN | Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1 | 45 | 318 | 9.0E-60 |
| sp|P53942|RNH2A_YEAST | Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH201 PE=1 SV=1 | 25 | 310 | 4.0E-59 |
| sp|Q9CWY8|RNH2A_MOUSE | Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2 | 69 | 327 | 3.0E-58 |
| sp|Q5U209|RNH2A_RAT | Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2 SV=1 | 69 | 327 | 2.0E-57 |
| sp|Q9VPP5|RNH2A_DROME | Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690 PE=2 SV=1 | 69 | 342 | 2.0E-53 |
| sp|Q54D13|RNH2A_DICDI | Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A PE=3 SV=1 | 62 | 331 | 5.0E-50 |
| sp|Q9SEZ6|RNH2A_ARATH | Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2 | 69 | 318 | 5.0E-50 |
| sp|Q9U6P6|RNH2A_CAEEL | Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2 SV=1 | 69 | 301 | 9.0E-48 |
| sp|A4FWE5|RNH2_METM5 | Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rnhB PE=3 SV=1 | 62 | 299 | 3.0E-21 |
| sp|P57673|RNH2_THEAC | Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB PE=3 SV=1 | 64 | 303 | 9.0E-21 |
| sp|A9A9T9|RNH2_METM6 | Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rnhB PE=3 SV=1 | 69 | 299 | 1.0E-19 |
| sp|A6VGW0|RNH2_METM7 | Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rnhB PE=3 SV=1 | 69 | 299 | 4.0E-19 |
| sp|Q97CG6|RNH2_THEVO | Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2 | 73 | 299 | 2.0E-18 |
| sp|O59351|RNH2_PYRHO | Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1 | 73 | 299 | 4.0E-18 |
| sp|A2BL34|RNH2_HYPBU | Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5) GN=rnhB PE=3 SV=1 | 71 | 273 | 1.0E-17 |
| sp|O74035|RNH2_THEKO | Ribonuclease HII OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rnhB PE=1 SV=1 | 73 | 299 | 1.0E-17 |
| sp|Q6LXH7|RNH2_METMP | Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL) GN=rnhB PE=3 SV=1 | 68 | 299 | 2.0E-17 |
| sp|A1RYM0|RNH2_THEPD | Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3 SV=1 | 73 | 297 | 3.0E-17 |
| sp|Q9V1A9|RNH2_PYRAB | Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB PE=3 SV=1 | 73 | 309 | 5.0E-17 |
| sp|Q8U036|RNH2_PYRFU | Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1 | 73 | 300 | 5.0E-17 |
| sp|O27102|RNH2_METTH | Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rnhB PE=3 SV=1 | 71 | 295 | 1.0E-16 |
| sp|Q74MH3|RNH2_NANEQ | Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB PE=3 SV=1 | 73 | 269 | 7.0E-16 |
| sp|A8MAH5|RNH2_CALMQ | Ribonuclease HII OS=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) GN=rnhB PE=3 SV=1 | 73 | 301 | 6.0E-15 |
| sp|Q9YET5|RNH2_AERPE | Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2 | 70 | 297 | 2.0E-14 |
| sp|Q57599|RNH2_METJA | Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rnhB PE=1 SV=1 | 72 | 306 | 2.0E-14 |
| sp|A7I9P7|RNH2_METB6 | Ribonuclease HII OS=Methanoregula boonei (strain 6A8) GN=rnhB PE=3 SV=1 | 73 | 306 | 1.0E-13 |
| sp|A5ULV6|RNH2_METS3 | Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rnhB PE=3 SV=1 | 71 | 297 | 3.0E-13 |
| sp|Q4JA60|RNH2_SULAC | Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB PE=3 SV=1 | 70 | 297 | 4.0E-13 |
| sp|Q974Z3|RNH2_SULTO | Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1 | 70 | 297 | 5.0E-13 |
| sp|Q2FP80|RNH2_METHJ | Ribonuclease HII OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rnhB PE=3 SV=1 | 73 | 306 | 7.0E-12 |
| sp|B1YB67|RNH2_PYRNV | Ribonuclease HII OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rnhB PE=3 SV=1 | 73 | 295 | 2.0E-11 |
| sp|Q8ZXL6|RNH2_PYRAE | Ribonuclease HII OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rnhB PE=3 SV=1 | 73 | 294 | 2.0E-11 |
| sp|Q8TPF4|RNH2_METAC | Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1 | 73 | 299 | 6.0E-11 |
| sp|A0RV25|RNH2_CENSY | Ribonuclease HII OS=Cenarchaeum symbiosum (strain A) GN=rnhB PE=3 SV=1 | 73 | 302 | 7.0E-11 |
| sp|Q470F1|RNH2_CUPPJ | Ribonuclease HII OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rnhB PE=3 SV=1 | 73 | 305 | 5.0E-09 |
| sp|O29634|RNH2_ARCFU | Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1 SV=1 | 73 | 297 | 5.0E-08 |
| sp|Q2GJ70|RNH2_ANAPZ | Ribonuclease HII OS=Anaplasma phagocytophilum (strain HZ) GN=rnhB PE=3 SV=1 | 55 | 313 | 1.0E-07 |
| sp|Q3IRF6|RNH2_NATPD | Ribonuclease HII OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=rnhB PE=3 SV=1 | 72 | 295 | 2.0E-07 |
| sp|Q0KA30|RNH2_CUPNH | Ribonuclease HII OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rnhB PE=3 SV=1 | 53 | 298 | 2.0E-06 |
| sp|Q9HNR3|RNH2_HALSA | Ribonuclease HII OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rnhB PE=3 SV=1 | 72 | 306 | 8.0E-06 |
| sp|B0R6T4|RNH2_HALS3 | Ribonuclease HII OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rnhB PE=3 SV=1 | 72 | 306 | 8.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear export signal | 0.5759 | 0.6506 | 0.0602 | 0.0077 | 0.3151 | 0.0132 | 0.125 | 0.2041 | 0.123 | 0.0145 |
| Orthofinder run ID | 4 |
| Orthogroup | 2091 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2458 MDGAAPAVVPPPAPDEESEPGPSTFVPPSVHAAAVVSGASWTHFSPVPPSLLAPPSDGADASSSSSPPPCALGVD EAGRGPVLGPMVYGVLYLPLRLSDELLRDERHRFDDSKALTPAARSGLMRALCTAGSDLHASCGWATAALSAADI GAGMLRPGGAAYNLNAQALDATVALIQGVYDRGVNVRDIYVDTVGPPAAYQARLQRVFPAARVTVAKKADSLYPC VSAASVCAKVTRDAALEQLWRARAPLAADTAMAWGSGYPSDARCVAWMRGNMHPVFGWGPECRFSWGTAKDMLEA KGTAAVKVDWPLHDDGETSRLTDFFTSDADDGAAANELGTWYGTPAELDAF* |
| Coding | >Hirsu2|2458 ATGGACGGTGCCGCCCCCGCCGTGGTGCCCCCACCGGCTCCCGACGAAGAGTCGGAGCCCGGGCCGTCGACCTTC GTCCCGCCGTCGGTGCACGCCGCGGCCGTCGTCTCCGGCGCGTCGTGGACGCACTTCTCGCCGGTGCCGCCGTCG CTGCTGGCGCCCCCCTCGGACGGGGCGGATGCGTCGTCGTCGTCATCGCCGCCGCCGTGCGCGCTGGGCGTCGAC GAGGCCGGGCGCGGGCCCGTCCTCGGCCCCATGGTCTACGGCGTCCTGTACCTTCCGCTGCGGCTCTCGGACGAG CTGCTGCGCGACGAGCGGCACCGGTTCGACGACTCCAAGGCGCTGACGCCGGCGGCGCGGTCCGGGCTGATGCGC GCGCTCTGCACCGCCGGCTCGGACCTGCACGCCTCGTGCGGCTGGGCCACGGCGGCGCTGTCGGCCGCCGACATC GGCGCCGGCATGCTGCGCCCCGGCGGCGCCGCCTACAACCTCAACGCCCAGGCGCTCGACGCCACCGTCGCCCTG ATCCAGGGCGTCTACGACCGCGGCGTCAACGTCCGCGACATCTACGTCGACACCGTCGGCCCGCCCGCCGCCTAC CAGGCCCGCCTGCAGCGCGTCTTCCCCGCCGCCCGCGTCACCGTCGCCAAGAAGGCCGACAGCCTGTACCCCTGC GTCAGCGCCGCCTCCGTCTGCGCAAAGGTCACGCGCGACGCCGCCCTCGAGCAGCTGTGGCGGGCGCGCGCCCCG CTCGCCGCCGACACCGCCATGGCCTGGGGCTCCGGCTACCCCTCGGACGCGCGCTGCGTGGCCTGGATGAGGGGC AACATGCACCCCGTCTTCGGCTGGGGCCCCGAGTGCCGCTTCAGCTGGGGCACCGCCAAGGACATGCTCGAGGCC AAGGGCACGGCCGCCGTCAAGGTCGACTGGCCGCTGCACGACGACGGCGAGACGAGCCGCCTGACCGACTTCTTC ACCTCCGACGCCGACGACGGCGCCGCCGCCAACGAGCTGGGCACGTGGTATGGCACTCCTGCGGAACTCGATGCA TTCTAG |
| Transcript | >Hirsu2|2458 ATGGACGGTGCCGCCCCCGCCGTGGTGCCCCCACCGGCTCCCGACGAAGAGTCGGAGCCCGGGCCGTCGACCTTC GTCCCGCCGTCGGTGCACGCCGCGGCCGTCGTCTCCGGCGCGTCGTGGACGCACTTCTCGCCGGTGCCGCCGTCG CTGCTGGCGCCCCCCTCGGACGGGGCGGATGCGTCGTCGTCGTCATCGCCGCCGCCGTGCGCGCTGGGCGTCGAC GAGGCCGGGCGCGGGCCCGTCCTCGGCCCCATGGTCTACGGCGTCCTGTACCTTCCGCTGCGGCTCTCGGACGAG CTGCTGCGCGACGAGCGGCACCGGTTCGACGACTCCAAGGCGCTGACGCCGGCGGCGCGGTCCGGGCTGATGCGC GCGCTCTGCACCGCCGGCTCGGACCTGCACGCCTCGTGCGGCTGGGCCACGGCGGCGCTGTCGGCCGCCGACATC GGCGCCGGCATGCTGCGCCCCGGCGGCGCCGCCTACAACCTCAACGCCCAGGCGCTCGACGCCACCGTCGCCCTG ATCCAGGGCGTCTACGACCGCGGCGTCAACGTCCGCGACATCTACGTCGACACCGTCGGCCCGCCCGCCGCCTAC CAGGCCCGCCTGCAGCGCGTCTTCCCCGCCGCCCGCGTCACCGTCGCCAAGAAGGCCGACAGCCTGTACCCCTGC GTCAGCGCCGCCTCCGTCTGCGCAAAGGTCACGCGCGACGCCGCCCTCGAGCAGCTGTGGCGGGCGCGCGCCCCG CTCGCCGCCGACACCGCCATGGCCTGGGGCTCCGGCTACCCCTCGGACGCGCGCTGCGTGGCCTGGATGAGGGGC AACATGCACCCCGTCTTCGGCTGGGGCCCCGAGTGCCGCTTCAGCTGGGGCACCGCCAAGGACATGCTCGAGGCC AAGGGCACGGCCGCCGTCAAGGTCGACTGGCCGCTGCACGACGACGGCGAGACGAGCCGCCTGACCGACTTCTTC ACCTCCGACGCCGACGACGGCGCCGCCGCCAACGAGCTGGGCACGTGGTATGGCACTCCTGCGGAACTCGATGCA TTCTAG |
| Gene | >Hirsu2|2458 ATGGACGGTGCCGCCCCCGCCGTGGTGCCCCCACCGGCTCCCGACGAAGAGTCGGAGCCCGGGCCGTCGACCTTC GTCCCGCCGTCGGTGCACGCCGCGGCCGTCGTCTCCGGCGCGTCGTGGACGCACTTCTCGCCGGTGCCGCCGTCG CTGCTGGCGCCCCCCTCGGACGGGGCGGATGCGTCGTCGTCGTCATCGCCGCCGCCGTGCGCGCTGGGCGTCGAC GAGGCCGGGCGCGGGCCCGTCCTCGGCCCCATGGTCTACGGCGTCCTGTACCTTCCGCTGCGGCTCTCGGACGAG CTGCTGCGCGACGAGCGGCACCGGTTCGACGACTCCAAGGCGCTGACGCCGGCGGCGCGGTCCGGGCTGATGCGC GCGCTCTGCACCGCCGGCTCGGACCTGCACGCCTCGTGCGGCTGGGCCACGGCGGCGCTGTCGGCCGCCGACATC GGCGCCGGCATGCTGCGCCCCGGCGGCGCCGCCTACAACCTCAACGCCCAGGCGCTCGACGCCACCGTCGCCCTG ATCCAGGGCGTCTACGACCGCGGCGTCAACGTCCGCGACATCTACGTCGACACCGTCGGCCCGCCCGCCGCCTAC CAGGCCCGCCTGCAGCGCGTCTTCCCCGCCGCCCGCGTCACCGTCGCCAAGAAGGCCGACAGCCTGTACCCCTGC GTCAGCGCCGCCTCCGTCTGCGCAAAGGTCACGCGCGACGCCGCCCTCGAGCAGCTGTGGCGGGCGCGCGCCCCG CTCGCCGCCGACACCGCCATGGCCTGGGGCTCCGGCTACCCCTCGGACGCGCGCTGCGTGGCCTGGATGAGGGGC AACATGCACCCCGTCTTCGGCTGGGGCCCCGAGTGCCGCTTCAGCTGGGGCACCGCCAAGGACATGCTCGAGGCC AAGGGCACGGCCGCCGTCAAGGTCGACTGGCCGCTGCACGACGACGGCGAGACGAGCCGCCTGACCGACTTCTTC ACCTCCGACGCCGACGACGGCGCCGCCGCCAACGAGCTGGGCACGTGGTATGGCACTCCTGCGGAACTCGATGCA TTCTAG |