Protein ID | Hirsu2|2457 |
Gene name | |
Location | Contig_159:676..2917 |
Strand | - |
Gene length (bp) | 2241 |
Transcript length (bp) | 1998 |
Coding sequence length (bp) | 1998 |
Protein length (aa) | 666 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF15624 | Mif2_N | Kinetochore CENP-C fungal homologue, Mif2, N-terminal | 3.0E-35 | 16 | 138 |
PF11699 | CENP-C_C | Mif2/CENP-C like | 8.2E-33 | 562 | 646 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9USR9|CENPC_SCHPO | Centromere protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnp3 PE=4 SV=2 | 409 | 649 | 2.0E-21 |
sp|Q03188|CENPC_HUMAN | Centromere protein C OS=Homo sapiens GN=CENPC PE=1 SV=2 | 420 | 646 | 2.0E-15 |
sp|P49452|CENPC_MOUSE | Centromere protein C OS=Mus musculus GN=Cenpc PE=1 SV=2 | 420 | 646 | 6.0E-13 |
sp|P49453|CENPC_SHEEP | Centromere protein C (Fragment) OS=Ovis aries GN=CENPC PE=2 SV=1 | 420 | 646 | 1.0E-10 |
sp|P35201|MIF2_YEAST | Protein MIF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIF2 PE=1 SV=1 | 409 | 646 | 2.0E-07 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.1131 | 0.907 | 0.1635 | 0.0364 | 0.0725 | 0.0239 | 0.0148 | 0.0046 | 0.0117 | 0.0026 |
Orthofinder run ID | 4 |
Orthogroup | 2090 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2457 MAPRARRGEASEPQAFHELGVRGRKTGVYLPDGGERDEHGMQPLDAIFSSPSKTTEPIDAAADETGSEDMEILSS GGPGPRTVLQNQRNVQYPIPRSRSPLKTNLGSPARKNPYVERPSSTARRDDRDDPSVTRKLDFNARGGDRSRAHG RVNGVNGASEDDDDDDDSIVGVHLDPDVTDMAEESLQLSSALDGADDTHRDEPAARGAARATARSVAEKERLEEE APAPRRRGRPRRDDRPKDDARSSSSLTTTKKRRSARRSSGGADETEPAPSRREEAEADDEPRQAKRQRTKAPVAP KVAPHAKAPPTPVVESEPEPDPESEPEDDEPEEEAEPEPERTPKPSRPAAKTVEAPRVAKPDDRPEPKGKRGRKP KQRAADGDGGAGEASFMALQRGPPMPRSRGLVSVRRDADAVTQTRSGRHSYRPIEYWRGEQVIREDEERSDMFHR GDFVLPTIKEVVRVPPEAPPSKRAPRAKAAGGKGKGKGKGRGRARDWQMEEEEDELEDWEVSPGTVEGEVVVWEP EHEEQPPADDEPVQVTDERIAIAADAIQTSDIKDASFRFAKTLTTPFMGAGVVDLPPGSEKRPKNSRRMHMVFFV HYGKVLVTINDAQFRISAGGTWFVPRGNYYSITNDYNLPARIFFAQGCEVQVARPDDSQMTFSQL* |
Coding | >Hirsu2|2457 ATGGCTCCGCGCGCGAGGCGCGGCGAGGCGTCCGAGCCGCAGGCCTTCCACGAGCTGGGAGTCCGAGGCCGGAAA ACGGGCGTCTACTTGCCCGACGGCGGAGAGCGCGACGAGCACGGCATGCAACCCCTCGACGCCATCTTCTCCTCG CCCTCCAAGACCACCGAGCCGATAGACGCCGCCGCCGACGAGACCGGCAGCGAGGACATGGAAATATTATCGAGT GGCGGGCCCGGCCCCCGGACCGTGCTCCAGAACCAGCGCAACGTCCAGTATCCCATCCCGCGAAGTCGATCGCCG CTTAAGACGAACCTCGGCTCCCCCGCGCGTAAGAACCCGTACGTGGAGCGACCCTCGTCCACAGCGCGCCGCGAC GACCGCGACGACCCAAGCGTCACCCGGAAGCTGGACTTCAACGCCCGCGGCGGCGACAGGTCCAGGGCGCACGGC CGTGTCAACGGCGTCAACGGCGCGTCCGAGGACGACGACGACGACGACGACTCCATCGTCGGCGTCCACCTCGAC CCGGACGTCACGGACATGGCGGAGGAGTCGCTGCAGCTCAGCAGCGCCTTGGACGGCGCCGACGACACCCACCGC GACGAACCGGCGGCGCGCGGCGCCGCCCGAGCGACGGCCAGGAGCGTTGCCGAGAAGGAGCGCCTAGAAGAGGAG GCGCCTGCTCCGCGGCGCCGGGGACGGCCGAGACGCGATGATCGCCCGAAGGACGATGCCAGGTCGTCGTCGAGC CTCACGACGACCAAGAAGAGGCGCTCGGCCCGGCGTTCGTCCGGCGGCGCCGACGAGACGGAGCCAGCTCCGTCA CGACGAGAAGAGGCCGAGGCCGATGACGAACCTCGGCAGGCCAAGCGACAACGCACCAAGGCGCCCGTGGCCCCC AAAGTCGCGCCCCACGCCAAGGCGCCGCCGACACCGGTGGTGGAATCGGAACCCGAGCCCGATCCTGAGTCGGAG CCTGAAGATGACGAGCCCGAAGAGGAAGCTGAACCAGAACCAGAACGGACGCCGAAGCCTTCGCGTCCCGCGGCG AAGACGGTCGAGGCGCCGCGCGTGGCCAAGCCAGACGACAGGCCCGAGCCCAAGGGCAAGCGGGGCCGGAAACCC AAGCAGAGGGCGGCCGACGGCGACGGGGGAGCGGGCGAGGCGTCCTTCATGGCCCTGCAGCGGGGCCCGCCGATG CCGAGGTCGCGCGGCCTGGTGTCGGTGCGGCGCGACGCCGACGCCGTGACGCAGACGAGGTCGGGCAGGCACTCG TACAGGCCGATCGAGTACTGGCGAGGCGAGCAGGTGATACGGGAGGACGAGGAGCGGAGCGACATGTTCCACCGC GGCGACTTCGTGCTCCCCACCATCAAGGAGGTGGTGCGCGTGCCGCCAGAGGCCCCACCGTCGAAGCGCGCGCCA CGGGCCAAGGCGGCCGGCGGCAAGGGCAAGGGCAAGGGCAAGGGCCGGGGCCGGGCGCGCGACTGGCAGATGGAG GAGGAGGAGGACGAGCTCGAGGACTGGGAGGTGAGCCCGGGCACGGTGGAGGGCGAGGTGGTGGTGTGGGAGCCG GAGCACGAGGAGCAGCCGCCGGCCGACGACGAGCCGGTGCAGGTGACGGACGAGCGCATCGCCATCGCGGCCGAC GCGATCCAGACGTCGGACATCAAGGACGCCAGCTTCCGCTTCGCCAAGACGCTGACGACGCCGTTCATGGGCGCC GGCGTCGTCGACCTGCCGCCCGGGTCGGAGAAGCGGCCCAAGAACTCGCGGCGGATGCACATGGTCTTCTTCGTG CACTACGGCAAGGTGCTCGTCACCATCAACGACGCGCAGTTCCGCATCTCGGCCGGCGGGACCTGGTTCGTCCCC AGGGGAAACTACTACAGCATCACCAACGACTACAACCTGCCGGCCCGCATCTTCTTCGCCCAGGGCTGCGAGGTC CAGGTCGCCCGGCCCGACGACTCGCAGATGACATTCTCGCAGCTGTAG |
Transcript | >Hirsu2|2457 ATGGCTCCGCGCGCGAGGCGCGGCGAGGCGTCCGAGCCGCAGGCCTTCCACGAGCTGGGAGTCCGAGGCCGGAAA ACGGGCGTCTACTTGCCCGACGGCGGAGAGCGCGACGAGCACGGCATGCAACCCCTCGACGCCATCTTCTCCTCG CCCTCCAAGACCACCGAGCCGATAGACGCCGCCGCCGACGAGACCGGCAGCGAGGACATGGAAATATTATCGAGT GGCGGGCCCGGCCCCCGGACCGTGCTCCAGAACCAGCGCAACGTCCAGTATCCCATCCCGCGAAGTCGATCGCCG CTTAAGACGAACCTCGGCTCCCCCGCGCGTAAGAACCCGTACGTGGAGCGACCCTCGTCCACAGCGCGCCGCGAC GACCGCGACGACCCAAGCGTCACCCGGAAGCTGGACTTCAACGCCCGCGGCGGCGACAGGTCCAGGGCGCACGGC CGTGTCAACGGCGTCAACGGCGCGTCCGAGGACGACGACGACGACGACGACTCCATCGTCGGCGTCCACCTCGAC CCGGACGTCACGGACATGGCGGAGGAGTCGCTGCAGCTCAGCAGCGCCTTGGACGGCGCCGACGACACCCACCGC GACGAACCGGCGGCGCGCGGCGCCGCCCGAGCGACGGCCAGGAGCGTTGCCGAGAAGGAGCGCCTAGAAGAGGAG GCGCCTGCTCCGCGGCGCCGGGGACGGCCGAGACGCGATGATCGCCCGAAGGACGATGCCAGGTCGTCGTCGAGC CTCACGACGACCAAGAAGAGGCGCTCGGCCCGGCGTTCGTCCGGCGGCGCCGACGAGACGGAGCCAGCTCCGTCA CGACGAGAAGAGGCCGAGGCCGATGACGAACCTCGGCAGGCCAAGCGACAACGCACCAAGGCGCCCGTGGCCCCC AAAGTCGCGCCCCACGCCAAGGCGCCGCCGACACCGGTGGTGGAATCGGAACCCGAGCCCGATCCTGAGTCGGAG CCTGAAGATGACGAGCCCGAAGAGGAAGCTGAACCAGAACCAGAACGGACGCCGAAGCCTTCGCGTCCCGCGGCG AAGACGGTCGAGGCGCCGCGCGTGGCCAAGCCAGACGACAGGCCCGAGCCCAAGGGCAAGCGGGGCCGGAAACCC AAGCAGAGGGCGGCCGACGGCGACGGGGGAGCGGGCGAGGCGTCCTTCATGGCCCTGCAGCGGGGCCCGCCGATG CCGAGGTCGCGCGGCCTGGTGTCGGTGCGGCGCGACGCCGACGCCGTGACGCAGACGAGGTCGGGCAGGCACTCG TACAGGCCGATCGAGTACTGGCGAGGCGAGCAGGTGATACGGGAGGACGAGGAGCGGAGCGACATGTTCCACCGC GGCGACTTCGTGCTCCCCACCATCAAGGAGGTGGTGCGCGTGCCGCCAGAGGCCCCACCGTCGAAGCGCGCGCCA CGGGCCAAGGCGGCCGGCGGCAAGGGCAAGGGCAAGGGCAAGGGCCGGGGCCGGGCGCGCGACTGGCAGATGGAG GAGGAGGAGGACGAGCTCGAGGACTGGGAGGTGAGCCCGGGCACGGTGGAGGGCGAGGTGGTGGTGTGGGAGCCG GAGCACGAGGAGCAGCCGCCGGCCGACGACGAGCCGGTGCAGGTGACGGACGAGCGCATCGCCATCGCGGCCGAC GCGATCCAGACGTCGGACATCAAGGACGCCAGCTTCCGCTTCGCCAAGACGCTGACGACGCCGTTCATGGGCGCC GGCGTCGTCGACCTGCCGCCCGGGTCGGAGAAGCGGCCCAAGAACTCGCGGCGGATGCACATGGTCTTCTTCGTG CACTACGGCAAGGTGCTCGTCACCATCAACGACGCGCAGTTCCGCATCTCGGCCGGCGGGACCTGGTTCGTCCCC AGGGGAAACTACTACAGCATCACCAACGACTACAACCTGCCGGCCCGCATCTTCTTCGCCCAGGGCTGCGAGGTC CAGGTCGCCCGGCCCGACGACTCGCAGATGACATTCTCGCAGCTGTAG |
Gene | >Hirsu2|2457 ATGGCTCCGCGCGCGAGGCGCGGCGAGGCGTCCGAGCCGCAGGCCTTCCACGAGCTGGGAGTCCGAGGCCGGTAG GGGCCTTTTCTTTCTCTTTCCTGTTTTTTTTTTCTTCGGCGACTCTTCGCTCCGCGTGTCGCGACGACGCGCCTG CATCGAACCCACGATCGTCTGACCCGGCTGCGCAGGAAAACGGGCGTCTACTTGCCCGACGGCGGAGAGCGCGAC GAGCACGGCATGCAACCCCTCGACGCCATCTTCTCCTCGCCCTCCAAGACCACCGAGCCGATAGACGCCGCCGCC GACGAGACCGGCAGCGAGGACATGGAAATATTATCGAGTGAGGGCCGCCCCCTCCTACCGACGGCCAGGTCCCCC CCGGCGGCTGACACCCGGCGACCTTCAGGTGGCGGGCCCGGCCCCCGGACCGTGCTCCAGAACCAGCGCAACGTC CAGTATCCCATCCCGCGAAGTCGATCGCCGCTTAAGACGAACCTCGGCTCCCCCGCGCGTAAGAACCCGTACGTG GAGCGACCCTCGTCCACAGCGCGCCGCGACGACCGCGACGACCCAAGCGTCACCCGGAAGCTGGACTTCAACGCC CGCGGCGGCGACAGGTCCAGGGCGCACGGCCGTGTCAACGGCGTCAACGGCGCGTCCGAGGACGACGACGACGAC GACGACTCCATCGTCGGCGTCCACCTCGACCCGGACGTCACGGACATGGCGGAGGAGTCGCTGCAGCTCAGCAGC GCCTTGGACGGCGCCGACGACACCCACCGCGACGAACCGGCGGCGCGCGGCGCCGCCCGAGCGACGGCCAGGAGC GTTGCCGAGAAGGAGCGCCTAGAAGAGGAGGCGCCTGCTCCGCGGCGCCGGGGACGGCCGAGACGCGATGATCGC CCGAAGGACGATGCCAGGTCGTCGTCGAGCCTCACGACGACCAAGAAGAGGCGCTCGGCCCGGCGTTCGTCCGGC GGCGCCGACGAGACGGAGCCAGCTCCGTCACGACGAGAAGAGGCCGAGGCCGATGACGAACCTCGGCAGGCCAAG CGACAACGCACCAAGGCGCCCGTGGCCCCCAAAGTCGCGCCCCACGCCAAGGCGCCGCCGACACCGGTGGTGGAA TCGGAACCCGAGCCCGATCCTGAGTCGGAGCCTGAAGATGACGAGCCCGAAGAGGAAGCTGAACCAGAACCAGAA CGGACGCCGAAGCCTTCGCGTCCCGCGGCGAAGACGGTCGAGGCGCCGCGCGTGGCCAAGCCAGACGACAGGCCC GAGCCCAAGGGCAAGCGGGGCCGGAAACCCAAGCAGAGGGCGGCCGACGGCGACGGGGGAGCGGGCGAGGCGTCC TTCATGGCCCTGCAGCGGGGCCCGCCGATGCCGAGGTCGCGCGGCCTGGTGTCGGTGCGGCGCGACGCCGACGCC GTGACGCAGACGAGGTCGGGCAGGCACTCGTACAGGCCGATCGAGTACTGGCGAGGCGAGCAGGTGATACGGGAG GACGAGGAGCGGAGCGACATGTTCCACCGCGGCGACTTCGTGCTCCCCACCATCAAGGAGGTGGTGCGCGTGCCG CCAGAGGCCCCACCGTCGAAGCGCGCGCCACGGGCCAAGGCGGCCGGCGGCAAGGGCAAGGGCAAGGGCAAGGGC CGGGGCCGGGCGCGCGACTGGCAGATGGAGGAGGAGGAGGACGAGCTCGAGGACTGGGAGGTGAGCCCGGGCACG GTGGAGGGCGAGGTGGTGGTGTGGGAGCCGGAGCACGAGGAGCAGCCGCCGGCCGACGACGAGCCGGTGCAGGTG ACGGACGAGCGCATCGCCATCGCGGCCGACGCGATCCAGACGTCGGACATCAAGGACGCCAGCTTCCGCTTCGCC AAGACGCTGACGACGCCGTTCATGGGCGCCGGCGTCGTCGACCTGCCGCCCGGGTCGGAGAAGCGGCCCAAGAAC TCGCGGCGGATGCACATGGTCTTCTTCGTGCACTACGGCAAGGTGCTCGTCACCATCAACGACGCGCAGTTCCGC ATCTCGGCCGGCGGGACCTGGTTCGTCCCCAGGGGTGAGTCGTCTCTTCTCTCCCTCTCCCTCTCCCCCCCTCTT CTGACGCGCCGGGCGCGTGCAGGAAACTACTACAGCATCACCAACGACTACAACCTGCCGGCCCGCATCTTCTTC GCCCAGGGCTGCGAGGTCCAGGTCGCCCGGCCCGACGACTCGCAGATGACATTCTCGCAGCTGTAG |