© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2452 |
| Gene name | |
| Location | Contig_1588:2688..3682 |
| Strand | + |
| Gene length (bp) | 994 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 7.7E-07 | 86 | 253 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23903|E13B_BACCI | Glucan endo-1,3-beta-glucosidase A1 OS=Bacillus circulans GN=glcA PE=1 SV=1 | 2 | 257 | 2.0E-17 |
| sp|P45798|GUB_RHOMR | Beta-glucanase OS=Rhodothermus marinus GN=bglA PE=1 SV=1 | 52 | 259 | 4.0E-15 |
| sp|Q9Z3Q2|EGLC_RHIME | Endo-1,3-1,4-beta-glycanase EglC OS=Rhizobium meliloti (strain 1021) GN=eglC PE=3 SV=2 | 66 | 249 | 4.0E-08 |
| sp|O33680|EXSH_RHIME | Endo-1,3-1,4-beta-glycanase ExsH OS=Rhizobium meliloti (strain 1021) GN=exsH PE=1 SV=1 | 54 | 263 | 4.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6533 | 0.3195 | 0.3394 | 0.1155 | 0.4951 | 0.1793 | 0.2042 | 0.1155 | 0.307 | 0.0837 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GH16_3 | 2.0E-36 | 41 | 257 |
| Orthofinder run ID | 4 |
| Orthogroup | 5012 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2452 MPFRDRLIKRVRNEWDSLTSPSRPDQPPPEPQPQPDCVYWRPRFHPDVAVTDDWDAKIGNGPDGWGNQELQHYTA APANSFHTDDGKLVLRAVAVNSSADASTRYTSARLVSRQTLARDRGALTAVVLSPCADGIWPAFWLLPQEPFSWP VDGEVDIAETWNGDGENKSCLHWGFHHEPHKHRVLGTRIPDMHCRPVRYDFAWDQPGGRPGQGRMLWYIDGRPVM KAPIPEGTRPIRDMTVLLNVAMGGNVCGGKTPADGSYDMVVSTLFLATELEDGGWDRFERDWQSDATPHGNTY* |
| Coding | >Hirsu2|2452 ATGCCCTTCCGAGACCGTCTGATCAAGCGGGTCAGGAATGAATGGGACAGCCTGACCTCGCCGTCCCGCCCCGAC CAGCCGCCGCCCGAGCCCCAGCCTCAGCCCGACTGCGTCTACTGGCGGCCGCGCTTCCATCCCGACGTCGCCGTC ACCGATGACTGGGACGCCAAGATCGGCAACGGCCCGGACGGCTGGGGGAACCAGGAGCTCCAGCACTACACGGCC GCTCCCGCCAACTCATTCCACACCGATGACGGCAAGCTCGTCCTCCGCGCCGTGGCCGTCAACAGCTCGGCCGAC GCCTCGACGCGCTACACGTCGGCCCGGCTGGTCAGCCGCCAGACGCTGGCGCGCGACCGGGGCGCGCTGACGGCC GTCGTGCTCAGCCCCTGCGCCGACGGCATCTGGCCGGCCTTCTGGCTGCTTCCGCAGGAGCCCTTTTCGTGGCCG GTCGATGGCGAGGTCGACATCGCCGAGACGTGGAACGGCGACGGCGAGAACAAGTCGTGCCTGCACTGGGGCTTC CACCACGAGCCGCACAAGCACCGCGTCCTCGGCACCCGCATCCCCGACATGCACTGCCGCCCCGTCCGCTACGAC TTCGCCTGGGACCAGCCCGGCGGCCGGCCCGGCCAGGGCCGCATGCTCTGGTACATCGACGGCCGGCCCGTCATG AAGGCGCCCATCCCGGAGGGCACCCGGCCCATCCGCGACATGACCGTCCTGCTCAACGTGGCCATGGGCGGCAAC GTCTGCGGCGGCAAGACGCCGGCCGACGGCTCCTACGACATGGTCGTTTCCACCCTCTTCCTCGCGACCGAGCTC GAGGACGGCGGATGGGATCGCTTCGAGCGCGACTGGCAGAGCGATGCCACGCCCCACGGCAACACGTACTGA |
| Transcript | >Hirsu2|2452 ATGCCCTTCCGAGACCGTCTGATCAAGCGGGTCAGGAATGAATGGGACAGCCTGACCTCGCCGTCCCGCCCCGAC CAGCCGCCGCCCGAGCCCCAGCCTCAGCCCGACTGCGTCTACTGGCGGCCGCGCTTCCATCCCGACGTCGCCGTC ACCGATGACTGGGACGCCAAGATCGGCAACGGCCCGGACGGCTGGGGGAACCAGGAGCTCCAGCACTACACGGCC GCTCCCGCCAACTCATTCCACACCGATGACGGCAAGCTCGTCCTCCGCGCCGTGGCCGTCAACAGCTCGGCCGAC GCCTCGACGCGCTACACGTCGGCCCGGCTGGTCAGCCGCCAGACGCTGGCGCGCGACCGGGGCGCGCTGACGGCC GTCGTGCTCAGCCCCTGCGCCGACGGCATCTGGCCGGCCTTCTGGCTGCTTCCGCAGGAGCCCTTTTCGTGGCCG GTCGATGGCGAGGTCGACATCGCCGAGACGTGGAACGGCGACGGCGAGAACAAGTCGTGCCTGCACTGGGGCTTC CACCACGAGCCGCACAAGCACCGCGTCCTCGGCACCCGCATCCCCGACATGCACTGCCGCCCCGTCCGCTACGAC TTCGCCTGGGACCAGCCCGGCGGCCGGCCCGGCCAGGGCCGCATGCTCTGGTACATCGACGGCCGGCCCGTCATG AAGGCGCCCATCCCGGAGGGCACCCGGCCCATCCGCGACATGACCGTCCTGCTCAACGTGGCCATGGGCGGCAAC GTCTGCGGCGGCAAGACGCCGGCCGACGGCTCCTACGACATGGTCGTTTCCACCCTCTTCCTCGCGACCGAGCTC GAGGACGGCGGATGGGATCGCTTCGAGCGCGACTGGCAGAGCGATGCCACGCCCCACGGCAACACGTACTGA |
| Gene | >Hirsu2|2452 ATGCCCTTCCGAGACCGTCTGATCAAGCGGGTCAGGAATGAATGGGACAGCCTGACCTCGCCGTCCCGCCCCGAC CAGCCGCCGCCCGAGCCCCAGCCTCAGCCCGACTGCGTCTACTGGCGGCCGCGCTTCCATCCCGACGTCGCCGTC ACCGATGACTGGGACGCCAAGATCGGCAACGGCCCGGACGGCTGGGGGAACCAGGAGCTCCAGCACTACACGGCC GCTCCCGCCAACTCATTCCAGTGCGTCTCTCTCTCTCTCCTTCTCTGCGCCGCGGCATCGCTCCGGCATGCCTTC GCTCTGCTGTCCCAAAAGCGCTGCTGACCCGCCCATAAACAGCACCGATGACGGCAAGCTCGTCCTCCGCGCCGT GGCCGTCAACAGCTCGGCCGACGCCTCGACGCGCTACACGTCGGCCCGGCTGGTCAGCCGCCAGACGCTGGCGCG CGACCGGGGCGCGCTGACGGCCGTCGTGCTCAGCCCCTGCGCCGACGGCATCTGGCCGGCCTTCTGGCTGCTTCC GCAGGAGCCCTTTTCGTGGCCGGTCGATGGCGAGGTCGACATCGCCGAGACGTGGAACGGCGACGGCGAGAACAA GTCGTGCCTGCACTGGGGCTTCCACCACGAGCCGCACAAGCACCGCGTCCTCGGCACCCGCATCCCCGACATGCA CTGCCGCCCCGTCCGCTACGACTTCGCCTGGGACCAGCCCGGCGGCCGGCCCGGCCAGGGCCGCATGCTCTGGTA CATCGACGGCCGGCCCGTCATGAAGGCGCCCATCCCGGAGGGCACCCGGCCCATCCGCGACATGACCGTCCTGCT CAACGTGGCCATGGGCGGCAACGTCTGCGGCGGCAAGACGCCGGCCGACGGCTCCTACGACATGGTCGTTTCCAC CCTCTTCCTCGCGACCGAGCTCGAGGACGGCGGATGGGATCGCTTCGAGCGCGACTGGCAGAGCGATGCCACGCC CCACGGCAACACGTACTGA |