© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2451 |
| Gene name | |
| Location | Contig_1587:3942..5146 |
| Strand | + |
| Gene length (bp) | 1204 |
| Transcript length (bp) | 591 |
| Coding sequence length (bp) | 591 |
| Protein length (aa) | 197 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06087 | Tyr-DNA_phospho | Tyrosyl-DNA phosphodiesterase | 1.5E-28 | 7 | 192 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006281 | DNA repair | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0008081 | phosphoric diester hydrolase activity | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0043226 | organelle | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008152 | metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0043227 | membrane-bounded organelle | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5943 | 0.4895 | 0.2421 | 0.0728 | 0.2278 | 0.0507 | 0.149 | 0.2562 | 0.2671 | 0.0454 |
| Orthofinder run ID | 4 |
| Orthogroup | 5011 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2451 MENMVFLIDLPRLDKGADHESTLFSQELERFLRSMGVEDKMVDSLASYNFSKTAGLGFVYTRPGGHRDGSFERIG YCGLGSTVTALGLATTDPVEVDLACASLGAIKYSLIESIYNACQGDGGMKEYLARINRKPGVNHSGSLGAYQLLK DRFRIYFPTNRTVRDSRGGEAAGGTICLQSRWWHSPDFPTELGPSG* |
| Coding | >Hirsu2|2451 ATGGAAAATATGGTCTTTCTAATCGACCTGCCACGGCTAGATAAAGGTGCTGATCACGAGTCCACCCTGTTCAGT CAGGAACTTGAGCGTTTCCTGCGGAGCATGGGGGTCGAAGATAAGATGGTTGATAGCCTTGCGAGTTACAATTTC TCCAAAACAGCCGGTCTTGGTTTCGTGTATACCAGGCCCGGGGGGCACAGGGATGGATCTTTTGAGCGAATCGGA TATTGCGGATTAGGGTCCACCGTTACTGCACTGGGCTTGGCGACTACGGATCCTGTCGAGGTTGACTTGGCGTGC GCCTCTCTCGGAGCCATCAAATACAGTCTAATCGAATCAATTTACAACGCCTGCCAGGGGGATGGCGGCATGAAG GAATACCTTGCGCGAATAAATCGCAAGCCAGGTGTCAATCACTCAGGATCTCTAGGGGCATATCAGCTGCTGAAG GACCGATTCCGCATCTACTTTCCGACGAATCGGACGGTACGCGATAGCCGAGGCGGTGAAGCAGCTGGGGGTACA ATTTGCCTGCAATCGAGGTGGTGGCATTCACCAGACTTCCCGACTGAGTTGGGGCCGAGTGGTTAA |
| Transcript | >Hirsu2|2451 ATGGAAAATATGGTCTTTCTAATCGACCTGCCACGGCTAGATAAAGGTGCTGATCACGAGTCCACCCTGTTCAGT CAGGAACTTGAGCGTTTCCTGCGGAGCATGGGGGTCGAAGATAAGATGGTTGATAGCCTTGCGAGTTACAATTTC TCCAAAACAGCCGGTCTTGGTTTCGTGTATACCAGGCCCGGGGGGCACAGGGATGGATCTTTTGAGCGAATCGGA TATTGCGGATTAGGGTCCACCGTTACTGCACTGGGCTTGGCGACTACGGATCCTGTCGAGGTTGACTTGGCGTGC GCCTCTCTCGGAGCCATCAAATACAGTCTAATCGAATCAATTTACAACGCCTGCCAGGGGGATGGCGGCATGAAG GAATACCTTGCGCGAATAAATCGCAAGCCAGGTGTCAATCACTCAGGATCTCTAGGGGCATATCAGCTGCTGAAG GACCGATTCCGCATCTACTTTCCGACGAATCGGACGGTACGCGATAGCCGAGGCGGTGAAGCAGCTGGGGGTACA ATTTGCCTGCAATCGAGGTGGTGGCATTCACCAGACTTCCCGACTGAGTTGGGGCCGAGTGGTTAA |
| Gene | >Hirsu2|2451 ATGGAAAATGTCGGCATATCCCCTACACTCATGGACTGTTAGCCGACTACAACGCAACAGGCCTACTAACTTAAC GGCGCTCCCCAGATGGTCTTTCTAATCGACCTGCCACGGCTAGATAAAGGTGCTGATCACGAGTCCACCCTGTTC AGTCAGGAACTTGAGCGTTTCCTGCGGAGCATGGGGGTCGAAGATAAGATGGTTGATAGCCTTGCGAGTTACAAT TTCTCCAAAACAGCCGGTCTTGGTTTCGTGTATACCAGGTCAGATTCTCCGCTTGAAAACAATTCATGTACATGA AACTTCAAGTTGGCTCACAGTTTTCAGGCCCGGGGGGCACAGGGATGGATCTTTTGAGCGAATCGGTCCGTGGAA GCCCCGCCGAACAAGCAGCCGTGCAGACTCTGACATCTGGTCAAGGATATTGCGGATTAGGGTCCACCGTTACTG CACTGGGCTTGGCGACTACGGATCCTGTCGAGGTTGACTTGGCGGTATGTGACCTGCGCCCATCTCGCAGCAATC ACGGAAGGTGGAATGATTGTCTGCTCACAATCAGGTACCAGTGCGCCTCTCTCGGAGCCATCAAATACAGTCTAA TCGAATCAATTTACAACGCCTGCCAGGGTGAGTGTGAATCGATCATGTATCTCCGCGTTGTACTCTTTCTTGCCT GCGAAATGTCTTGACACTGCTCTCAGGGGATGGCGGCATGAAGGAATACCTTGCGCGAATAAATCGCAAGCCAGG TGTCAATCACTCAGGATCTCTAGGGGCATATCAGCTGCTGAAGGACCGATTCCGCATCTACTTTCCGACGAATCG GACGGTACGCGATAGCCGAGGCGGTGAAGCAGTAAGTAGGCAGACTCAGGTGCGCGCTCTTGGGCTCTCTTGGAC TGATTTAGAACCATGACGTGCTGGAAGGCTGGGGGTACAATTTGCCTGCAATCGAGGTGGTGGCATTCACCAGAC TTCCCGACTGAGTTGGTCCGTGATTGTGTCAACACGAGAGAGGGTCTCCTCATGCACAGCAAGATAATACTGGTG CGTACAATAAAGCGACAAGGCGAGATGGATGCACGGAAGTGCTGGGCATATGTGGGCAGCGCAAACTTGTCCGAG AGCGCCTGGTCAGTCAAGTGGTCGGGTCTGACTGGGATGGGGAACGACGCTGATGACGATACAGGGGCCGAGTGG TTAA |