© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2450 |
| Gene name | |
| Location | Contig_1587:1674..2910 |
| Strand | - |
| Gene length (bp) | 1236 |
| Transcript length (bp) | 966 |
| Coding sequence length (bp) | 966 |
| Protein length (aa) | 322 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02517 | Rce1-like | Type II CAAX prenyl endopeptidase Rce1-like | 2.8E-13 | 156 | 260 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94448|RCE1_SCHPO | Probable CAAX prenyl protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.02 PE=3 SV=1 | 13 | 305 | 8.0E-48 |
| sp|Q8GW19|FACE2_ARATH | CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2 | 4 | 269 | 1.0E-31 |
| sp|Q9U1H8|FACE2_DROME | CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3 | 21 | 266 | 8.0E-25 |
| sp|P57791|FACE2_MOUSE | CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1 | 26 | 271 | 8.0E-24 |
| sp|Q9Y256|FACE2_HUMAN | CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1 | 4 | 271 | 2.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94448|RCE1_SCHPO | Probable CAAX prenyl protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.02 PE=3 SV=1 | 13 | 305 | 8.0E-48 |
| sp|Q8GW19|FACE2_ARATH | CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2 | 4 | 269 | 1.0E-31 |
| sp|Q9U1H8|FACE2_DROME | CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3 | 21 | 266 | 8.0E-25 |
| sp|P57791|FACE2_MOUSE | CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1 | 26 | 271 | 8.0E-24 |
| sp|Q9Y256|FACE2_HUMAN | CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1 | 4 | 271 | 2.0E-23 |
| sp|Q03530|RCE1_YEAST | CAAX prenyl protease 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCE1 PE=1 SV=1 | 26 | 303 | 3.0E-19 |
| sp|G5EEP3|FACE2_CAEEL | CAAX prenyl protease 2 homolog OS=Caenorhabditis elegans GN=fce-2 PE=2 SV=1 | 43 | 273 | 3.0E-17 |
| sp|A6H7A0|FACE2_BOVIN | CAAX prenyl protease 2 OS=Bos taurus GN=RCE1 PE=2 SV=1 | 4 | 271 | 1.0E-12 |
| sp|B0BMW8|FACE2_RAT | CAAX prenyl protease 2 OS=Rattus norvegicus GN=Rce1 PE=2 SV=1 | 5 | 271 | 3.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004222 | metalloendopeptidase activity | Yes |
| GO:0071586 | CAAX-box protein processing | Yes |
| GO:0016020 | membrane | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008150 | biological_process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016485 | protein processing | No |
| GO:0008233 | peptidase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0051604 | protein maturation | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0801 | 0.223 | 0.0092 | 0.0519 | 0.225 | 0.0173 | 0.9261 | 0.2877 | 0.5603 | 0.0424 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 178 | 200 | 22 |
| 3 | 220 | 242 | 22 |
| 4 | 247 | 269 | 22 |
| 5 | 289 | 311 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6071 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2450 MDSGSEGPGLGHLQAYGLLIVYCLVYVLPLYASSTTRPSPTRSRDSPEAIRARVRAVSLSTSACCTGTLLILCRS AAAIRSSSGSLSEPATARYLLQSPSHLMGIWPVGFNEIVKSLLLTSLLFAGPLFECLVLDGAWRYIWRLNSLKQV WYDHPTWRNIIVGPVTEECLFRSATVPLLLLAGSNLSSIVFRSPLVFGLAHLHHFYEFRITHPHSTLTAGIVRSL LQFSYTSVFGAYATFLFLRTGSLLAVIVVHAFCNCVGLPRLWGSVEPYWTLSRDSRASNSLTKWTALYYMLLLGG CVSWYANLYYLTQSSLALAAL* |
| Coding | >Hirsu2|2450 ATGGACTCAGGGTCGGAGGGACCTGGCCTCGGCCATTTACAGGCTTACGGTCTTCTGATAGTTTACTGCCTCGTA TATGTCCTGCCTCTTTATGCCTCGTCCACCACACGGCCCTCGCCCACTCGATCCAGAGATTCTCCTGAGGCCATC CGAGCCCGAGTACGAGCTGTTTCTCTGTCCACTTCTGCCTGCTGTACTGGCACGCTTCTCATTCTCTGCCGATCC GCCGCTGCAATCCGCTCTAGCTCCGGCTCGCTCTCTGAACCTGCTACGGCCAGATACCTTCTGCAGTCTCCTTCT CACCTCATGGGAATTTGGCCTGTGGGTTTCAACGAGATCGTCAAGAGCCTCCTCTTGACGTCATTACTATTCGCC GGTCCCCTCTTCGAATGCCTTGTCCTGGACGGTGCCTGGAGATACATATGGCGGCTCAACTCTCTCAAGCAGGTT TGGTACGACCATCCAACTTGGCGAAACATAATTGTGGGTCCTGTCACTGAGGAATGCCTCTTCCGCTCCGCGACA GTCCCCTTATTACTTCTTGCGGGTTCGAATTTGTCGAGCATCGTTTTTCGGTCTCCCCTTGTCTTCGGTCTTGCA CACCTACACCACTTCTATGAATTCCGCATCACTCACCCCCATTCAACACTCACCGCCGGCATTGTCCGTTCGCTT CTCCAGTTCTCGTACACGTCGGTTTTCGGCGCTTATGCTACCTTTCTGTTCTTACGCACGGGCTCTCTGCTTGCT GTCATCGTTGTACATGCATTTTGCAATTGTGTTGGGCTTCCACGCCTATGGGGTAGTGTGGAGCCCTACTGGACG CTTAGCCGCGATTCGCGTGCCTCCAATTCTTTGACCAAATGGACCGCACTCTACTATATGCTGCTTCTGGGCGGG TGTGTATCCTGGTACGCGAACCTCTATTATCTGACACAATCGTCCCTGGCTCTCGCTGCACTTTGA |
| Transcript | >Hirsu2|2450 ATGGACTCAGGGTCGGAGGGACCTGGCCTCGGCCATTTACAGGCTTACGGTCTTCTGATAGTTTACTGCCTCGTA TATGTCCTGCCTCTTTATGCCTCGTCCACCACACGGCCCTCGCCCACTCGATCCAGAGATTCTCCTGAGGCCATC CGAGCCCGAGTACGAGCTGTTTCTCTGTCCACTTCTGCCTGCTGTACTGGCACGCTTCTCATTCTCTGCCGATCC GCCGCTGCAATCCGCTCTAGCTCCGGCTCGCTCTCTGAACCTGCTACGGCCAGATACCTTCTGCAGTCTCCTTCT CACCTCATGGGAATTTGGCCTGTGGGTTTCAACGAGATCGTCAAGAGCCTCCTCTTGACGTCATTACTATTCGCC GGTCCCCTCTTCGAATGCCTTGTCCTGGACGGTGCCTGGAGATACATATGGCGGCTCAACTCTCTCAAGCAGGTT TGGTACGACCATCCAACTTGGCGAAACATAATTGTGGGTCCTGTCACTGAGGAATGCCTCTTCCGCTCCGCGACA GTCCCCTTATTACTTCTTGCGGGTTCGAATTTGTCGAGCATCGTTTTTCGGTCTCCCCTTGTCTTCGGTCTTGCA CACCTACACCACTTCTATGAATTCCGCATCACTCACCCCCATTCAACACTCACCGCCGGCATTGTCCGTTCGCTT CTCCAGTTCTCGTACACGTCGGTTTTCGGCGCTTATGCTACCTTTCTGTTCTTACGCACGGGCTCTCTGCTTGCT GTCATCGTTGTACATGCATTTTGCAATTGTGTTGGGCTTCCACGCCTATGGGGTAGTGTGGAGCCCTACTGGACG CTTAGCCGCGATTCGCGTGCCTCCAATTCTTTGACCAAATGGACCGCACTCTACTATATGCTGCTTCTGGGCGGG TGTGTATCCTGGTACGCGAACCTCTATTATCTGACACAATCGTCCCTGGCTCTCGCTGCACTTTGA |
| Gene | >Hirsu2|2450 ATGGACTCAGGGTCGGAGGGACCTGGCCTCGGCCATTTACAGGCTTACGGTCTTCTGGTAAGTGTCGAGTCATAA GTTGGGCGGCGTTATAGAAAAGAAAGGCCCATCACGGTCGGGCCTTCGGCGAGAAATCCTCAGCACTGCACAGCT CATTCTCGCAGTCAGCACAGGCCTGCAATTGCTAACGGAACAATACAGATAGTTTACTGCCTCGTATATGTCCTG CCTCTTTATGCCTCGTCCACCACACGGCCCTCGCCCACTCGATCCAGAGATTCTCCTGAGGCCATCCGAGCCCGA GTACGAGCTGTTTCTCTGTCCACTTCTGCCTGCTGTACTGGCACGCTTCTCATTCTCTGCCGATCCGCCGCTGCA ATCCGCTCTAGCTCCGGCTCGCTCTCTGAACCTGCTACGGCCAGATACCTTCTGCAGTCTCCTTCTCACCTCATG GGAATTTGGCCTGTGGGTTTCAACGAGATCGTCAAGAGCCTCCTCTTGACGTCATTACTATTCGCCGGTCCCCTC TTCGAATGCCTTGTCCTGGACGGTGCCTGGAGATACATATGGCGGCTCAACTCTCTCAAGCAGGTTTGGTACGAC CATCCAACTTGGCGAAACATAATTGTGGTAAGTGCACACATTCAAATCGCCAGCGTTATAACTCATCTGTATGAT CAATTCTTCATGTATATGGCCAAGGTCACCTGGACCCCGATCATCGTCTATCCTGTTGGCCATGTTCTCACTTTT CGTTAGGGTCCTGTCACTGAGGAATGCCTCTTCCGCTCCGCGACAGTCCCCTTATTACTTCTTGCGGGTTCGAAT TTGTCGAGCATCGTTTTTCGGTCTCCCCTTGTCTTCGGTCTTGCACACCTACACCACTTCTATGAATTCCGCATC ACTCACCCCCATTCAACACTCACCGCCGGCATTGTCCGTTCGCTTCTCCAGTTCTCGTACACGTCGGTTTTCGGC GCTTATGCTACCTTTCTGTTCTTACGCACGGGCTCTCTGCTTGCTGTCATCGTTGTACATGCATTTTGCAATTGT GTTGGGCTTCCACGCCTATGGGGTAGTGTGGAGCCCTACTGGACGCTTAGCCGCGATTCGCGTGCCTCCAATTCT TTGACCAAATGGACCGCACTCTACTATATGCTGCTTCTGGGCGGGTGTGTATCCTGGTACGCGAACCTCTATTAT CTGACACAATCGTCCCTGGCTCTCGCTGCACTTTGA |