© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|245 |
| Gene name | |
| Location | Contig_1044:3654..5269 |
| Strand | - |
| Gene length (bp) | 1615 |
| Transcript length (bp) | 1509 |
| Coding sequence length (bp) | 1509 |
| Protein length (aa) | 503 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide|Transmembrane domain | 0.1523 | 0.1448 | 0.3695 | 0.1933 | 0.1431 | 0.0091 | 0.3941 | 0.1811 | 0.8951 | 0.0088 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 759 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|245 MRAAFDKGSGLPSPKMLSPRLLPRRSVVALVVASLFVAGLLVTSGRLGARCDDGVYCGLSQLRHRPAAPRPPPAP PSAGTESARPVEGAGAECAGFPDTSRVLLVMKTGASEVYGKVPNQILTNLRCLPEFFIFSDRAQKVAGYSIRDSL DTVLPQVKLKHKDFDLYRRQQSCPVDQDACNKHHDAAQEGWNLDKYKNVHMAEKTYALRPDYDWYLFVDADTYVG WPTLMRWLEKLDAREPHYIGSIAYVGNVPFAHGGSGYLVSQAAMTKLFKNQTGVANRWDERASRECCGDFVFALA LKAETQIAVKHAWPTINGEKPHTLPYADNAWCQPIVTMHHVGAEEVSDLYAFERERNFSQPMRIRDVYHRFVKDQ LTATRDDWDNLSDNVFFLNASAYQYADWELQRAKKEDLSALELVAHQSFDDCRRACQSMEKCLQFRFYHGICAIS DSIKHGHPTKKEEDQHWQYQSGWNLRRIEEWVAAHDDCGAVQFPIRDGWLRR* |
| Coding | >Hirsu2|245 ATGCGCGCCGCCTTCGACAAGGGCTCGGGGCTGCCGTCGCCCAAAATGCTGTCGCCTCGCCTCCTCCCGAGACGG TCCGTGGTGGCGCTCGTCGTCGCCAGCCTCTTCGTCGCCGGTCTGCTCGTCACCTCCGGCCGCCTCGGCGCCCGC TGCGACGACGGCGTCTACTGCGGCCTGTCGCAGCTGCGGCACAGACCCGCCGCACCGCGCCCGCCGCCGGCACCG CCCTCCGCCGGCACCGAGTCGGCCAGGCCCGTCGAAGGCGCCGGGGCCGAGTGCGCCGGCTTCCCCGACACGTCG CGCGTGCTGCTCGTCATGAAGACGGGCGCGTCCGAGGTGTACGGCAAGGTGCCCAACCAGATCCTCACCAACCTC CGCTGCCTGCCCGAGTTCTTCATCTTCAGCGACCGGGCGCAGAAGGTGGCCGGCTACTCGATCCGCGACAGCCTC GACACCGTTCTGCCCCAGGTCAAGCTCAAGCACAAGGACTTTGACCTCTACCGGCGCCAGCAGAGCTGCCCGGTC GACCAGGACGCCTGCAACAAGCACCACGACGCGGCCCAGGAGGGCTGGAATCTCGACAAGTACAAGAACGTCCAC ATGGCCGAGAAGACCTACGCCCTGCGCCCCGACTACGACTGGTACCTGTTCGTCGACGCCGACACGTACGTCGGC TGGCCCACGCTCATGCGGTGGCTGGAGAAGCTCGACGCCCGCGAGCCCCACTACATCGGCAGCATCGCCTACGTC GGCAACGTCCCCTTCGCACACGGCGGCAGCGGGTACCTCGTCTCGCAGGCAGCCATGACCAAGCTCTTCAAGAAC CAGACGGGCGTCGCCAACCGGTGGGACGAGCGGGCGTCGCGCGAGTGCTGCGGCGACTTTGTCTTTGCGCTGGCG CTCAAGGCGGAGACGCAGATTGCGGTCAAGCATGCGTGGCCGACCATTAACGGCGAGAAGCCACACACATTGCCG TACGCGGACAACGCGTGGTGCCAACCGATCGTGACGATGCACCACGTCGGGGCCGAGGAGGTGTCGGACTTGTAC GCCTTCGAGCGGGAGCGCAACTTCTCGCAGCCGATGCGCATCCGAGACGTGTACCACCGCTTCGTCAAGGACCAG CTGACGGCGACACGCGACGACTGGGACAACCTGAGCGACAACGTCTTCTTCCTCAACGCGTCGGCCTACCAATAC GCCGACTGGGAGCTGCAGCGGGCCAAGAAGGAGGACCTGTCGGCGCTGGAGCTGGTGGCGCACCAGAGCTTCGAC GACTGCCGCAGGGCATGCCAGAGCATGGAAAAGTGCCTCCAATTCCGCTTCTACCACGGCATCTGCGCCATCAGC GACAGCATCAAGCACGGGCACCCGACGAAAAAGGAGGAGGACCAGCACTGGCAGTACCAGAGCGGCTGGAACTTG CGGAGGATCGAGGAGTGGGTCGCGGCCCACGACGACTGCGGCGCGGTCCAGTTCCCGATCAGAGACGGCTGGCTG AGGCGATGA |
| Transcript | >Hirsu2|245 ATGCGCGCCGCCTTCGACAAGGGCTCGGGGCTGCCGTCGCCCAAAATGCTGTCGCCTCGCCTCCTCCCGAGACGG TCCGTGGTGGCGCTCGTCGTCGCCAGCCTCTTCGTCGCCGGTCTGCTCGTCACCTCCGGCCGCCTCGGCGCCCGC TGCGACGACGGCGTCTACTGCGGCCTGTCGCAGCTGCGGCACAGACCCGCCGCACCGCGCCCGCCGCCGGCACCG CCCTCCGCCGGCACCGAGTCGGCCAGGCCCGTCGAAGGCGCCGGGGCCGAGTGCGCCGGCTTCCCCGACACGTCG CGCGTGCTGCTCGTCATGAAGACGGGCGCGTCCGAGGTGTACGGCAAGGTGCCCAACCAGATCCTCACCAACCTC CGCTGCCTGCCCGAGTTCTTCATCTTCAGCGACCGGGCGCAGAAGGTGGCCGGCTACTCGATCCGCGACAGCCTC GACACCGTTCTGCCCCAGGTCAAGCTCAAGCACAAGGACTTTGACCTCTACCGGCGCCAGCAGAGCTGCCCGGTC GACCAGGACGCCTGCAACAAGCACCACGACGCGGCCCAGGAGGGCTGGAATCTCGACAAGTACAAGAACGTCCAC ATGGCCGAGAAGACCTACGCCCTGCGCCCCGACTACGACTGGTACCTGTTCGTCGACGCCGACACGTACGTCGGC TGGCCCACGCTCATGCGGTGGCTGGAGAAGCTCGACGCCCGCGAGCCCCACTACATCGGCAGCATCGCCTACGTC GGCAACGTCCCCTTCGCACACGGCGGCAGCGGGTACCTCGTCTCGCAGGCAGCCATGACCAAGCTCTTCAAGAAC CAGACGGGCGTCGCCAACCGGTGGGACGAGCGGGCGTCGCGCGAGTGCTGCGGCGACTTTGTCTTTGCGCTGGCG CTCAAGGCGGAGACGCAGATTGCGGTCAAGCATGCGTGGCCGACCATTAACGGCGAGAAGCCACACACATTGCCG TACGCGGACAACGCGTGGTGCCAACCGATCGTGACGATGCACCACGTCGGGGCCGAGGAGGTGTCGGACTTGTAC GCCTTCGAGCGGGAGCGCAACTTCTCGCAGCCGATGCGCATCCGAGACGTGTACCACCGCTTCGTCAAGGACCAG CTGACGGCGACACGCGACGACTGGGACAACCTGAGCGACAACGTCTTCTTCCTCAACGCGTCGGCCTACCAATAC GCCGACTGGGAGCTGCAGCGGGCCAAGAAGGAGGACCTGTCGGCGCTGGAGCTGGTGGCGCACCAGAGCTTCGAC GACTGCCGCAGGGCATGCCAGAGCATGGAAAAGTGCCTCCAATTCCGCTTCTACCACGGCATCTGCGCCATCAGC GACAGCATCAAGCACGGGCACCCGACGAAAAAGGAGGAGGACCAGCACTGGCAGTACCAGAGCGGCTGGAACTTG CGGAGGATCGAGGAGTGGGTCGCGGCCCACGACGACTGCGGCGCGGTCCAGTTCCCGATCAGAGACGGCTGGCTG AGGCGATGA |
| Gene | >Hirsu2|245 ATGCGCGCCGCCTTCGACAAGGGCTCGGGGCTGCCGTCGCCCAAAATGCTGTCGCCTCGCCTCCTCCCGAGACGG TCCGTGGTGGCGCTCGTCGTCGCCAGCCTCTTCGTCGCCGGTCTGCTCGTCACCTCCGGCCGCCTCGGCGCCCGC TGCGACGACGGCGTCTACTGCGGCCTGTCGCAGCTGCGGCACAGACCCGCCGCACCGCGCCCGCCGCCGGCACCG CCCTCCGCCGGCACCGAGTCGGCCAGGCCCGTCGAAGGCGCCGGGGCCGAGTGCGCCGGCTTCCCCGACACGTCG CGCGTGCTGCTCGTCATGAAGACGGGCGCGTCCGAGGTGTACGGCAAGGTGCCCAACCAGATCCTCACCAACCTC CGCTGCCTGCCCGAGTTCTTCATCTTCAGCGACCGGGCGCAGAAGGTGGCCGGCTACTCGATCCGCGACAGCCTC GACACCGTTCTGCCCCAGGTCAAGCTCAAGCACAAGGACTTTGACCTCTACCGGCGCCAGCAGAGCTGCCCGGTC GACCAGGACGCCTGCAACAAGCACCACGACGCGGCCCAGGAGGGCTGGAATCTCGACAAGTACAAGAACGTCCAC ATGGCCGAGAAGACCTACGCCCTGCGCCCCGACTACGACTGGTACCTGTTCGTCGACGCCGACACGTACGTCGGC TGGCCCACGCTCATGCGGTGGCTGGAGAAGCTCGACGCCCGCGAGCCCCACTACATCGGCAGCATCGCCTACGTC GGCAACGTCCCCTTCGCACACGGCGGCAGCGGGTACCTCGTCTCGCAGGCAGCCATGACCAAGCTCTTCAAGAAC CAGACGGGCGTCGCCAACCGGTGGGACGAGCGGGCGTCGCGCGAGTGCTGCGGCGACTTTGTCTTTGCGCTGGCG CTCAAGGCGGAGACGCAGATTGCGGTCAAGCATGCGGTGAGTTGAGCCTCCGTCCTGCCGGGTCGAGGGGGGTGG GAGAGGGAGAGAGACAGAGACGGAACGAGAGAGAGATGAGATGATGCTGACTGCTGACCGGTGGCAGTGGCCGAC CATTAACGGCGAGAAGCCACACACATTGCCGTACGCGGACAACGCGTGGTGCCAACCGATCGTGACGATGCACCA CGTCGGGGCCGAGGAGGTGTCGGACTTGTACGCCTTCGAGCGGGAGCGCAACTTCTCGCAGCCGATGCGCATCCG AGACGTGTACCACCGCTTCGTCAAGGACCAGCTGACGGCGACACGCGACGACTGGGACAACCTGAGCGACAACGT CTTCTTCCTCAACGCGTCGGCCTACCAATACGCCGACTGGGAGCTGCAGCGGGCCAAGAAGGAGGACCTGTCGGC GCTGGAGCTGGTGGCGCACCAGAGCTTCGACGACTGCCGCAGGGCATGCCAGAGCATGGAAAAGTGCCTCCAATT CCGCTTCTACCACGGCATCTGCGCCATCAGCGACAGCATCAAGCACGGGCACCCGACGAAAAAGGAGGAGGACCA GCACTGGCAGTACCAGAGCGGCTGGAACTTGCGGAGGATCGAGGAGTGGGTCGCGGCCCACGACGACTGCGGCGC GGTCCAGTTCCCGATCAGAGACGGCTGGCTGAGGCGATGA |