© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2445 |
| Gene name | |
| Location | Contig_1585:4157..4735 |
| Strand | + |
| Gene length (bp) | 578 |
| Transcript length (bp) | 507 |
| Coding sequence length (bp) | 507 |
| Protein length (aa) | 169 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13095 | FTA2 | Kinetochore Sim4 complex subunit FTA2 | 9.9E-13 | 22 | 86 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5477 | 0.5462 | 0.5948 | 0.1148 | 0.3822 | 0.1038 | 0.1716 | 0.0997 | 0.0773 | 0.137 |
| Orthofinder run ID | 4 |
| Orthogroup | 6068 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2445 MATCNVFVEFWREFGATELKYKRSIPKQPVRAIVKELASTESGVEAPSLRRILRDISKLNRLDIYNRNIRKDNFR NEKLVEFGSSWTEPHCMLEADKDEAAETRVQDLVMFDEMVAMESLKTHVRATPNWLYCNKLRSRSSRPAAGVYKA RYEGAALKDFQFVYRLLL* |
| Coding | >Hirsu2|2445 ATGGCCACTTGCAACGTTTTCGTGGAGTTCTGGCGCGAATTCGGGGCGACGGAGCTCAAGTACAAGCGCAGCATC CCGAAACAGCCGGTGCGAGCCATCGTGAAGGAGCTCGCCAGCACCGAGTCCGGGGTGGAGGCTCCGAGCTTGCGG CGGATCCTGCGAGACATCAGCAAGCTCAACCGGCTTGATATTTACAACCGGAACATCCGCAAAGATAACTTCAGG AACGAAAAGCTGGTGGAATTTGGCTCGTCATGGACGGAGCCGCACTGCATGCTCGAGGCCGACAAGGACGAGGCG GCGGAGACGAGGGTCCAGGACCTGGTCATGTTCGACGAGATGGTGGCCATGGAGTCACTCAAGACGCATGTCAGG GCCACGCCTAACTGGCTGTACTGCAATAAGTTACGGTCCCGAAGTTCAAGGCCAGCAGCGGGAGTCTACAAGGCG CGGTATGAAGGGGCTGCATTAAAGGATTTCCAATTCGTGTACAGACTTTTATTATAG |
| Transcript | >Hirsu2|2445 ATGGCCACTTGCAACGTTTTCGTGGAGTTCTGGCGCGAATTCGGGGCGACGGAGCTCAAGTACAAGCGCAGCATC CCGAAACAGCCGGTGCGAGCCATCGTGAAGGAGCTCGCCAGCACCGAGTCCGGGGTGGAGGCTCCGAGCTTGCGG CGGATCCTGCGAGACATCAGCAAGCTCAACCGGCTTGATATTTACAACCGGAACATCCGCAAAGATAACTTCAGG AACGAAAAGCTGGTGGAATTTGGCTCGTCATGGACGGAGCCGCACTGCATGCTCGAGGCCGACAAGGACGAGGCG GCGGAGACGAGGGTCCAGGACCTGGTCATGTTCGACGAGATGGTGGCCATGGAGTCACTCAAGACGCATGTCAGG GCCACGCCTAACTGGCTGTACTGCAATAAGTTACGGTCCCGAAGTTCAAGGCCAGCAGCGGGAGTCTACAAGGCG CGGTATGAAGGGGCTGCATTAAAGGATTTCCAATTCGTGTACAGACTTTTATTATAG |
| Gene | >Hirsu2|2445 ATGGCCACTTGCAACGTTTTCGTGGAGTTCTGGCGCGAATTCGGGGCGACGGAGCTCAAGTACAAGCGCAGCATC CCGAAGTCGCTAGGCCAGAGAAGGAGCAGAAAGACTTTGTTGACTGTCCGCAGAAGCCAGGGAAGCGTCAGGGAA GACAGCCGGTGCGAGCCATCGTGAAGGAGCTCGCCAGCACCGAGTCCGGGGTGGAGGCTCCGAGCTTGCGGCGGA TCCTGCGAGACATCAGCAAGCTCAACCGGCTTGATATTTACAACCGGAACATCCGCAAAGATAACTTCAGGAACG AAAAGCTGGTGGAATTTGGCTCGTCATGGACGGAGCCGCACTGCATGCTCGAGGCCGACAAGGACGAGGCGGCGG AGACGAGGGTCCAGGACCTGGTCATGTTCGACGAGATGGTGGCCATGGAGTCACTCAAGACGCATGTCAGGGCCA CGCCTAACTGGCTGTACTGCAATAAGTTACGGTCCCGAAGTTCAAGGCCAGCAGCGGGAGTCTACAAGGCGCGGT ATGAAGGGGCTGCATTAAAGGATTTCCAATTCGTGTACAGACTTTTATTATAG |