© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2442 |
| Gene name | |
| Location | Contig_1584:3797..5606 |
| Strand | + |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1461 |
| Coding sequence length (bp) | 1461 |
| Protein length (aa) | 487 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear export signal | 0.5957 | 0.4551 | 0.1687 | 0.0525 | 0.3629 | 0.0448 | 0.0538 | 0.1836 | 0.2162 | 0.0046 |
| Orthofinder run ID | 4 |
| Orthogroup | 6067 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2442 MSFTCYCAICSGPLDAEDIEIGFMADHGGDFVSDDDSDGDDDDEQDPDCRYNPRLVSYQSIAWLSKIRCLGSNEE AKGPSKAFITGPASYKGDQEIAVKKGTDRNQPKAKTMCCYGEDPYQESEMAFPFHEACFEVLARLLTGTPDAKSV DKDVLFEAMENFVDSDREGVSMELDYGAITGSQQYWQSIQGEEYCAAQPNLVPAFKEALVRKLAEGRGPEPEPQA GAGAAAPRGAHDVFRKLPPEVLEEVALNVPLASLPAFAAASRAGRDLVRSNRFFRRLIRRQMAWAWEVDEAVAET APGPQPDYKALCRWLHALSGPKSGLDKGFLGLVNRRRVWEAMEPVANIYFKHTAQALGREAPARPLLESARCVYM TPAPSEADGRTESLFFVHDWAETKNMAATVEATSNPAGALVGIAISYSGRRRRLLGTDAAPGRGLESDTVRLHPG QEIDSLMVHTDDADGSICGFSVRQPPPLLRSALVPS* |
| Coding | >Hirsu2|2442 ATGAGCTTCACGTGTTACTGCGCCATCTGCAGCGGCCCGCTCGACGCCGAGGACATTGAAATCGGCTTCATGGCT GACCATGGTGGCGACTTTGTCAGCGACGATGATTCCGACGGCGACGACGACGACGAGCAAGACCCGGACTGCCGA TACAATCCGAGGCTTGTCTCCTACCAGAGCATTGCCTGGCTTTCCAAAATACGATGTCTTGGTTCCAACGAGGAG GCCAAGGGGCCCTCCAAGGCCTTCATCACCGGTCCGGCTTCCTACAAAGGCGATCAAGAGATAGCCGTCAAGAAG GGCACCGACCGGAACCAGCCGAAGGCGAAGACGATGTGCTGCTACGGAGAGGACCCTTACCAGGAGTCGGAGATG GCCTTCCCGTTCCACGAGGCCTGCTTCGAAGTCCTTGCCAGACTGCTGACTGGCACGCCCGACGCCAAGTCCGTC GACAAGGACGTGCTGTTTGAGGCCATGGAGAACTTCGTCGACTCGGACCGAGAAGGCGTAAGCATGGAACTCGAC TACGGCGCCATCACCGGCTCGCAGCAGTACTGGCAGTCGATCCAAGGCGAAGAGTACTGCGCCGCGCAGCCGAAC CTGGTCCCGGCGTTCAAGGAAGCCCTGGTCCGCAAGCTGGCCGAGGGCCGCGGCCCGGAGCCGGAGCCGCAGGCG GGAGCCGGAGCCGCCGCGCCGCGCGGGGCGCACGACGTCTTCCGCAAGCTGCCGCCCGAGGTGCTGGAGGAGGTG GCGCTCAACGTCCCCCTGGCGTCTCTGCCCGCGTTCGCGGCAGCGTCGCGGGCCGGGCGCGACCTCGTGCGCAGC AACCGCTTCTTCCGCCGGCTCATCCGGCGCCAGATGGCGTGGGCGTGGGAGGTGGACGAGGCCGTGGCGGAGACG GCGCCGGGCCCGCAGCCGGACTACAAGGCCCTGTGCCGCTGGCTGCACGCCCTGTCCGGCCCCAAGAGCGGGCTC GACAAGGGCTTCCTGGGCCTGGTCAACCGCCGGCGCGTGTGGGAGGCCATGGAACCGGTCGCCAACATCTACTTC AAACACACGGCCCAGGCCCTGGGACGGGAGGCGCCGGCGCGGCCTCTGCTCGAGTCGGCCCGGTGCGTCTACATG ACGCCCGCGCCGTCGGAAGCCGACGGCCGGACCGAGAGCCTGTTCTTCGTCCACGACTGGGCCGAGACCAAGAAC ATGGCGGCCACCGTAGAGGCCACGTCCAACCCGGCCGGCGCCCTCGTCGGCATCGCCATCTCCTACAGCGGGCGC AGGCGGCGCCTGCTCGGCACCGACGCGGCGCCCGGCCGCGGCCTCGAGAGCGACACGGTCCGGCTGCACCCCGGA CAGGAAATCGACAGCCTCATGGTCCACACCGACGATGCGGACGGCTCCATCTGCGGCTTCTCGGTACGGCAGCCC CCCCCCCTCCTCCGTTCGGCTCTGGTTCCATCGTAG |
| Transcript | >Hirsu2|2442 ATGAGCTTCACGTGTTACTGCGCCATCTGCAGCGGCCCGCTCGACGCCGAGGACATTGAAATCGGCTTCATGGCT GACCATGGTGGCGACTTTGTCAGCGACGATGATTCCGACGGCGACGACGACGACGAGCAAGACCCGGACTGCCGA TACAATCCGAGGCTTGTCTCCTACCAGAGCATTGCCTGGCTTTCCAAAATACGATGTCTTGGTTCCAACGAGGAG GCCAAGGGGCCCTCCAAGGCCTTCATCACCGGTCCGGCTTCCTACAAAGGCGATCAAGAGATAGCCGTCAAGAAG GGCACCGACCGGAACCAGCCGAAGGCGAAGACGATGTGCTGCTACGGAGAGGACCCTTACCAGGAGTCGGAGATG GCCTTCCCGTTCCACGAGGCCTGCTTCGAAGTCCTTGCCAGACTGCTGACTGGCACGCCCGACGCCAAGTCCGTC GACAAGGACGTGCTGTTTGAGGCCATGGAGAACTTCGTCGACTCGGACCGAGAAGGCGTAAGCATGGAACTCGAC TACGGCGCCATCACCGGCTCGCAGCAGTACTGGCAGTCGATCCAAGGCGAAGAGTACTGCGCCGCGCAGCCGAAC CTGGTCCCGGCGTTCAAGGAAGCCCTGGTCCGCAAGCTGGCCGAGGGCCGCGGCCCGGAGCCGGAGCCGCAGGCG GGAGCCGGAGCCGCCGCGCCGCGCGGGGCGCACGACGTCTTCCGCAAGCTGCCGCCCGAGGTGCTGGAGGAGGTG GCGCTCAACGTCCCCCTGGCGTCTCTGCCCGCGTTCGCGGCAGCGTCGCGGGCCGGGCGCGACCTCGTGCGCAGC AACCGCTTCTTCCGCCGGCTCATCCGGCGCCAGATGGCGTGGGCGTGGGAGGTGGACGAGGCCGTGGCGGAGACG GCGCCGGGCCCGCAGCCGGACTACAAGGCCCTGTGCCGCTGGCTGCACGCCCTGTCCGGCCCCAAGAGCGGGCTC GACAAGGGCTTCCTGGGCCTGGTCAACCGCCGGCGCGTGTGGGAGGCCATGGAACCGGTCGCCAACATCTACTTC AAACACACGGCCCAGGCCCTGGGACGGGAGGCGCCGGCGCGGCCTCTGCTCGAGTCGGCCCGGTGCGTCTACATG ACGCCCGCGCCGTCGGAAGCCGACGGCCGGACCGAGAGCCTGTTCTTCGTCCACGACTGGGCCGAGACCAAGAAC ATGGCGGCCACCGTAGAGGCCACGTCCAACCCGGCCGGCGCCCTCGTCGGCATCGCCATCTCCTACAGCGGGCGC AGGCGGCGCCTGCTCGGCACCGACGCGGCGCCCGGCCGCGGCCTCGAGAGCGACACGGTCCGGCTGCACCCCGGA CAGGAAATCGACAGCCTCATGGTCCACACCGACGATGCGGACGGCTCCATCTGCGGCTTCTCGGTACGGCAGCCC CCCCCCCTCCTCCGTTCGGCTCTGGTTCCATCGTAG |
| Gene | >Hirsu2|2442 ATGAGCTTCACGTGTTACTGCGCCATCTGCAGCGGCCCGCTCGACGCCGAGGACATTGAAATCGGCTTCATGGCT GACCATGGTGGCGACTTTGTCAGCGACGATGATTCCGACGGCGACGACGACGACGAGCAAGACCCGGACTGCCGA TACAATCCGAGGCTTGTCTCCTACCAGAGCATTGCCTGGCTTTCCAAAATACGATGTCTTGGTTCCAACGAGGAG GCCAAGGGGCCCTCCAAGTATTCGGCCCTCTCCTCCGCTCTGCCTTGCTCGTCGACGTGCCAACCCAAGTCACCT CCAGGGCCTTCATCACCGGTCCGGCTTCCTACAAAGGCGATGTATGCTCCCGAATCTCCATCAACCCCCGCGCCG GCGGTTCTGATCCGTTTTTTTTTTGCGTCGATAGCAAGAGATAGCCGTCAAGAAGGGCACCGGTACGTCCGTCCG TCTCCTCTGCGGTCCGGCCGCCCCCCAGACTGACCAGGCAGCCGTCAGACCGGAACCAGCCGAAGGCGAAGACGA TGTGCTGGTAACTCTCTGCGCCTCCCCATGCCGCCAGCCCCGCGGCCTGGACGCTGACGGGGGTTCAGCTACGGA GAGGACCCTTACCAGGAGTCGGAGATGGCCTTCCCGTTCCACGAGGCCTGCTTCGAAGTCCTTGCCAGACTGCTG ACTGGCACGCCCGACGCCAAGTCCGTCGACAAGGACGTGCTGTTTGAGGCCATGGAGAACTTCGTCGACTCGGAC CGAGAAGGCGTAAGCATGGAACTCGACTACGGCGCCATCACCGGCTCGCAGCAGTACTGGCAGTCGATCCAAGGC GAAGAGGTTCGTCGGCACACACACACACACACACACACACACACCCCGGGCGAGAATGGGCCGCAGAGGGAGTCC CCAACTGACCCGTCGAGCCGTCTGCAGTACTGCGCCGCGCAGCCGAACCTGGTCCCGGCGTTCAAGGAAGCCCTG GTCCGCAAGCTGGCCGAGGGCCGCGGCCCGGAGCCGGAGCCGCAGGCGGGAGCCGGAGCCGCCGCGCCGCGCGGG GCGCACGACGTCTTCCGCAAGCTGCCGCCCGAGGTGCTGGAGGAGGTGGCGCTCAACGTCCCCCTGGCGTCTCTG CCCGCGTTCGCGGCAGCGTCGCGGGCCGGGCGCGACCTCGTGCGCAGCAACCGCTTCTTCCGCCGGCTCATCCGG CGCCAGATGGCGTGGGCGTGGGAGGTGGACGAGGCCGTGGCGGAGACGGCGCCGGGCCCGCAGCCGGACTACAAG GCCCTGTGCCGCTGGCTGCACGCCCTGTCCGGCCCCAAGAGCGGGCTCGACAAGGGCTTCCTGGGCCTGGTCAAC CGCCGGCGCGTGTGGGAGGCCATGGAACCGGTCGCCAACATCTACTTCAAACACACGGCCCAGGCCCTGGGACGG GAGGCGCCGGCGCGGCCTCTGCTCGAGTCGGCCCGGTGCGTCTACATGACGCCCGCGCCGTCGGAAGCCGACGGC CGGACCGAGAGCCTGTTCTTCGTCCACGACTGGGCCGAGACCAAGAACATGGCGGCCACCGTAGAGGCCACGTCC AACCCGGCCGGCGCCCTCGTCGGCATCGCCATCTCCTACAGCGGGCGCAGGCGGCGCCTGCTCGGCACCGACGCG GCGCCCGGCCGCGGCCTCGAGAGCGACACGGTCCGGCTGCACCCCGGACAGGAAATCGACAGCCTCATGGTCCAC ACCGACGATGCGGACGGCTCCATCTGCGGCTTCTCGGTACGGCAGCCCCCCCCCCTCCTCCGTTCGGCTCTGGTT CCATCGTAG |