Protein ID | Hirsu2|2432 |
Gene name | |
Location | Contig_158:28455..29541 |
Strand | + |
Gene length (bp) | 1086 |
Transcript length (bp) | 1008 |
Coding sequence length (bp) | 1008 |
Protein length (aa) | 336 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide | 0.0837 | 0.0577 | 0.41 | 0.1078 | 0.1196 | 0.0539 | 0.62 | 0.4182 | 0.4184 | 0.0218 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.999567 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 287 | 309 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2085 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2432 MRFKVTTATLFVLAAAEPGRSFISPSDIILGARDVLSLPYLSSTTATPGGGSPLVRRQTASDSLQLGPGDGANSS AWDRETDAACVEALRAIERSTNPSGNCLCYNLPSLDTKTGIFNADLRLYRISEPREGFIDVPPSKIKVGVQYNGA SVSLATPKDMQAMGMTGSANSSAPPAVLRREEAKGPQQLQKYMFVGQIDKDRMADAMSMATLEALVMPTFTLTAQ DTKGGAVSTNVSLNEAAFLNGVFSKQVVRSDFASAQAAVDAKLAAVRNGTVAFVLPGVQLMVFPIGLIITSVWLL LGLTAYGIGTYERTMYAHTYKRRLGIPLGGVRKGF* |
Coding | >Hirsu2|2432 ATGCGGTTCAAAGTGACGACGGCGACCTTGTTCGTCCTGGCCGCGGCCGAGCCCGGCCGCTCCTTCATCTCGCCG TCGGACATCATCCTCGGCGCGCGCGACGTGCTGTCGCTGCCGTACCTGTCGTCGACGACGGCGACGCCCGGCGGC GGCAGCCCGCTGGTGCGGCGACAGACGGCGTCGGACTCGCTGCAGCTGGGCCCCGGCGACGGGGCCAACTCGTCG GCCTGGGACCGCGAGACGGACGCGGCCTGCGTCGAGGCGCTGCGGGCCATCGAGCGGAGCACCAACCCGTCCGGC AACTGCCTCTGCTACAACCTGCCGTCTCTCGACACCAAGACGGGCATCTTCAACGCCGACCTGCGCCTGTACCGC ATCTCGGAGCCGCGCGAGGGCTTCATCGACGTCCCGCCCAGCAAGATCAAGGTCGGCGTCCAGTACAACGGCGCG AGCGTCAGCCTCGCCACCCCCAAGGACATGCAGGCCATGGGCATGACCGGCTCCGCCAACTCGTCCGCGCCGCCC GCCGTCCTGAGACGCGAAGAGGCCAAGGGGCCGCAGCAGCTGCAGAAGTACATGTTCGTCGGCCAGATCGACAAA GACCGGATGGCCGACGCAATGTCCATGGCCACGCTGGAAGCGCTCGTGATGCCGACCTTCACCCTGACGGCGCAG GACACCAAGGGCGGCGCCGTAAGCACCAACGTCTCGCTCAACGAGGCCGCCTTCCTCAACGGCGTCTTCTCCAAG CAGGTCGTCCGGTCCGACTTCGCCTCGGCCCAGGCCGCCGTCGACGCCAAGCTGGCAGCCGTGCGCAACGGCACC GTCGCCTTCGTCCTGCCCGGCGTCCAGCTGATGGTCTTCCCCATCGGCCTCATCATCACCAGCGTCTGGCTGCTG CTCGGCCTCACCGCCTACGGCATCGGCACCTACGAGCGCACCATGTACGCCCACACCTACAAGCGCCGCCTCGGC ATACCCCTCGGCGGCGTCAGGAAGGGCTTCTGA |
Transcript | >Hirsu2|2432 ATGCGGTTCAAAGTGACGACGGCGACCTTGTTCGTCCTGGCCGCGGCCGAGCCCGGCCGCTCCTTCATCTCGCCG TCGGACATCATCCTCGGCGCGCGCGACGTGCTGTCGCTGCCGTACCTGTCGTCGACGACGGCGACGCCCGGCGGC GGCAGCCCGCTGGTGCGGCGACAGACGGCGTCGGACTCGCTGCAGCTGGGCCCCGGCGACGGGGCCAACTCGTCG GCCTGGGACCGCGAGACGGACGCGGCCTGCGTCGAGGCGCTGCGGGCCATCGAGCGGAGCACCAACCCGTCCGGC AACTGCCTCTGCTACAACCTGCCGTCTCTCGACACCAAGACGGGCATCTTCAACGCCGACCTGCGCCTGTACCGC ATCTCGGAGCCGCGCGAGGGCTTCATCGACGTCCCGCCCAGCAAGATCAAGGTCGGCGTCCAGTACAACGGCGCG AGCGTCAGCCTCGCCACCCCCAAGGACATGCAGGCCATGGGCATGACCGGCTCCGCCAACTCGTCCGCGCCGCCC GCCGTCCTGAGACGCGAAGAGGCCAAGGGGCCGCAGCAGCTGCAGAAGTACATGTTCGTCGGCCAGATCGACAAA GACCGGATGGCCGACGCAATGTCCATGGCCACGCTGGAAGCGCTCGTGATGCCGACCTTCACCCTGACGGCGCAG GACACCAAGGGCGGCGCCGTAAGCACCAACGTCTCGCTCAACGAGGCCGCCTTCCTCAACGGCGTCTTCTCCAAG CAGGTCGTCCGGTCCGACTTCGCCTCGGCCCAGGCCGCCGTCGACGCCAAGCTGGCAGCCGTGCGCAACGGCACC GTCGCCTTCGTCCTGCCCGGCGTCCAGCTGATGGTCTTCCCCATCGGCCTCATCATCACCAGCGTCTGGCTGCTG CTCGGCCTCACCGCCTACGGCATCGGCACCTACGAGCGCACCATGTACGCCCACACCTACAAGCGCCGCCTCGGC ATACCCCTCGGCGGCGTCAGGAAGGGCTTCTGA |
Gene | >Hirsu2|2432 ATGCGGTTCAAAGTGACGACGGCGACCTTGTTCGTCCTGGCCGCGGCCGAGCCCGGCCGCTCCTTCATCTCGCCG TCGGACATCATCCTCGGCGCGCGCGACGTGCTGTCGCTGCCGTACCTGTCGTCGACGACGGCGACGCCCGGCGGC GGCAGCCCGCTGGTGCGGCGACAGACGGCGTCGGACTCGCTGCAGCTGGGCCCCGGCGACGGGGCCAACTCGTCG GCCTGGGACCGCGAGACGGACGCGGCCTGCGTCGAGGCGCTGCGGGCCATCGAGCGGAGCACCAACCCGTCCGGC AACTGCCTCTGCTACAACCTGCCGTCTCTCGACACCAAGACGGGCATCTTCAACGCCGACCTGCGCCTGTACCGC ATCTCGGAGCCGCGCGAGGGCTTCATCGACGTCCCGCCCAGCAAGATCAAGGTCGGCGTCCAGTACAACGGCGCG AGCGTCAGCCTCGCCACCCCCAAGGACATGCAGGCCATGGGCATGACCGGCTCCGCCAACTCGTCCGCGCCGCCC GCCGTCCTGAGACGCGAAGAGGCCAAGGGGCCGCAGCAGCTGCAGAAGTACATGTTCGTCGGCCAGATCGACAAA GACCGGATGGCCGACGCAATGTCCATGTAAGTGTCGGGTACAGGCGAGGAACAAAGACGGACGAGGGAGGAGACC AAACCGGCTGACCGATGTTCTCCGCACAGGGCCACGCTGGAAGCGCTCGTGATGCCGACCTTCACCCTGACGGCG CAGGACACCAAGGGCGGCGCCGTAAGCACCAACGTCTCGCTCAACGAGGCCGCCTTCCTCAACGGCGTCTTCTCC AAGCAGGTCGTCCGGTCCGACTTCGCCTCGGCCCAGGCCGCCGTCGACGCCAAGCTGGCAGCCGTGCGCAACGGC ACCGTCGCCTTCGTCCTGCCCGGCGTCCAGCTGATGGTCTTCCCCATCGGCCTCATCATCACCAGCGTCTGGCTG CTGCTCGGCCTCACCGCCTACGGCATCGGCACCTACGAGCGCACCATGTACGCCCACACCTACAAGCGCCGCCTC GGCATACCCCTCGGCGGCGTCAGGAAGGGCTTCTGA |