© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2432 |
| Gene name | |
| Location | Contig_158:28455..29541 |
| Strand | + |
| Gene length (bp) | 1086 |
| Transcript length (bp) | 1008 |
| Coding sequence length (bp) | 1008 |
| Protein length (aa) | 336 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.0837 | 0.0577 | 0.41 | 0.1078 | 0.1196 | 0.0539 | 0.62 | 0.4182 | 0.4184 | 0.0218 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.999567 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 287 | 309 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2085 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2432 MRFKVTTATLFVLAAAEPGRSFISPSDIILGARDVLSLPYLSSTTATPGGGSPLVRRQTASDSLQLGPGDGANSS AWDRETDAACVEALRAIERSTNPSGNCLCYNLPSLDTKTGIFNADLRLYRISEPREGFIDVPPSKIKVGVQYNGA SVSLATPKDMQAMGMTGSANSSAPPAVLRREEAKGPQQLQKYMFVGQIDKDRMADAMSMATLEALVMPTFTLTAQ DTKGGAVSTNVSLNEAAFLNGVFSKQVVRSDFASAQAAVDAKLAAVRNGTVAFVLPGVQLMVFPIGLIITSVWLL LGLTAYGIGTYERTMYAHTYKRRLGIPLGGVRKGF* |
| Coding | >Hirsu2|2432 ATGCGGTTCAAAGTGACGACGGCGACCTTGTTCGTCCTGGCCGCGGCCGAGCCCGGCCGCTCCTTCATCTCGCCG TCGGACATCATCCTCGGCGCGCGCGACGTGCTGTCGCTGCCGTACCTGTCGTCGACGACGGCGACGCCCGGCGGC GGCAGCCCGCTGGTGCGGCGACAGACGGCGTCGGACTCGCTGCAGCTGGGCCCCGGCGACGGGGCCAACTCGTCG GCCTGGGACCGCGAGACGGACGCGGCCTGCGTCGAGGCGCTGCGGGCCATCGAGCGGAGCACCAACCCGTCCGGC AACTGCCTCTGCTACAACCTGCCGTCTCTCGACACCAAGACGGGCATCTTCAACGCCGACCTGCGCCTGTACCGC ATCTCGGAGCCGCGCGAGGGCTTCATCGACGTCCCGCCCAGCAAGATCAAGGTCGGCGTCCAGTACAACGGCGCG AGCGTCAGCCTCGCCACCCCCAAGGACATGCAGGCCATGGGCATGACCGGCTCCGCCAACTCGTCCGCGCCGCCC GCCGTCCTGAGACGCGAAGAGGCCAAGGGGCCGCAGCAGCTGCAGAAGTACATGTTCGTCGGCCAGATCGACAAA GACCGGATGGCCGACGCAATGTCCATGGCCACGCTGGAAGCGCTCGTGATGCCGACCTTCACCCTGACGGCGCAG GACACCAAGGGCGGCGCCGTAAGCACCAACGTCTCGCTCAACGAGGCCGCCTTCCTCAACGGCGTCTTCTCCAAG CAGGTCGTCCGGTCCGACTTCGCCTCGGCCCAGGCCGCCGTCGACGCCAAGCTGGCAGCCGTGCGCAACGGCACC GTCGCCTTCGTCCTGCCCGGCGTCCAGCTGATGGTCTTCCCCATCGGCCTCATCATCACCAGCGTCTGGCTGCTG CTCGGCCTCACCGCCTACGGCATCGGCACCTACGAGCGCACCATGTACGCCCACACCTACAAGCGCCGCCTCGGC ATACCCCTCGGCGGCGTCAGGAAGGGCTTCTGA |
| Transcript | >Hirsu2|2432 ATGCGGTTCAAAGTGACGACGGCGACCTTGTTCGTCCTGGCCGCGGCCGAGCCCGGCCGCTCCTTCATCTCGCCG TCGGACATCATCCTCGGCGCGCGCGACGTGCTGTCGCTGCCGTACCTGTCGTCGACGACGGCGACGCCCGGCGGC GGCAGCCCGCTGGTGCGGCGACAGACGGCGTCGGACTCGCTGCAGCTGGGCCCCGGCGACGGGGCCAACTCGTCG GCCTGGGACCGCGAGACGGACGCGGCCTGCGTCGAGGCGCTGCGGGCCATCGAGCGGAGCACCAACCCGTCCGGC AACTGCCTCTGCTACAACCTGCCGTCTCTCGACACCAAGACGGGCATCTTCAACGCCGACCTGCGCCTGTACCGC ATCTCGGAGCCGCGCGAGGGCTTCATCGACGTCCCGCCCAGCAAGATCAAGGTCGGCGTCCAGTACAACGGCGCG AGCGTCAGCCTCGCCACCCCCAAGGACATGCAGGCCATGGGCATGACCGGCTCCGCCAACTCGTCCGCGCCGCCC GCCGTCCTGAGACGCGAAGAGGCCAAGGGGCCGCAGCAGCTGCAGAAGTACATGTTCGTCGGCCAGATCGACAAA GACCGGATGGCCGACGCAATGTCCATGGCCACGCTGGAAGCGCTCGTGATGCCGACCTTCACCCTGACGGCGCAG GACACCAAGGGCGGCGCCGTAAGCACCAACGTCTCGCTCAACGAGGCCGCCTTCCTCAACGGCGTCTTCTCCAAG CAGGTCGTCCGGTCCGACTTCGCCTCGGCCCAGGCCGCCGTCGACGCCAAGCTGGCAGCCGTGCGCAACGGCACC GTCGCCTTCGTCCTGCCCGGCGTCCAGCTGATGGTCTTCCCCATCGGCCTCATCATCACCAGCGTCTGGCTGCTG CTCGGCCTCACCGCCTACGGCATCGGCACCTACGAGCGCACCATGTACGCCCACACCTACAAGCGCCGCCTCGGC ATACCCCTCGGCGGCGTCAGGAAGGGCTTCTGA |
| Gene | >Hirsu2|2432 ATGCGGTTCAAAGTGACGACGGCGACCTTGTTCGTCCTGGCCGCGGCCGAGCCCGGCCGCTCCTTCATCTCGCCG TCGGACATCATCCTCGGCGCGCGCGACGTGCTGTCGCTGCCGTACCTGTCGTCGACGACGGCGACGCCCGGCGGC GGCAGCCCGCTGGTGCGGCGACAGACGGCGTCGGACTCGCTGCAGCTGGGCCCCGGCGACGGGGCCAACTCGTCG GCCTGGGACCGCGAGACGGACGCGGCCTGCGTCGAGGCGCTGCGGGCCATCGAGCGGAGCACCAACCCGTCCGGC AACTGCCTCTGCTACAACCTGCCGTCTCTCGACACCAAGACGGGCATCTTCAACGCCGACCTGCGCCTGTACCGC ATCTCGGAGCCGCGCGAGGGCTTCATCGACGTCCCGCCCAGCAAGATCAAGGTCGGCGTCCAGTACAACGGCGCG AGCGTCAGCCTCGCCACCCCCAAGGACATGCAGGCCATGGGCATGACCGGCTCCGCCAACTCGTCCGCGCCGCCC GCCGTCCTGAGACGCGAAGAGGCCAAGGGGCCGCAGCAGCTGCAGAAGTACATGTTCGTCGGCCAGATCGACAAA GACCGGATGGCCGACGCAATGTCCATGTAAGTGTCGGGTACAGGCGAGGAACAAAGACGGACGAGGGAGGAGACC AAACCGGCTGACCGATGTTCTCCGCACAGGGCCACGCTGGAAGCGCTCGTGATGCCGACCTTCACCCTGACGGCG CAGGACACCAAGGGCGGCGCCGTAAGCACCAACGTCTCGCTCAACGAGGCCGCCTTCCTCAACGGCGTCTTCTCC AAGCAGGTCGTCCGGTCCGACTTCGCCTCGGCCCAGGCCGCCGTCGACGCCAAGCTGGCAGCCGTGCGCAACGGC ACCGTCGCCTTCGTCCTGCCCGGCGTCCAGCTGATGGTCTTCCCCATCGGCCTCATCATCACCAGCGTCTGGCTG CTGCTCGGCCTCACCGCCTACGGCATCGGCACCTACGAGCGCACCATGTACGCCCACACCTACAAGCGCCGCCTC GGCATACCCCTCGGCGGCGTCAGGAAGGGCTTCTGA |