Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2421
Gene name
LocationContig_1579:4618..5465
Strand-
Gene length (bp)847
Transcript length (bp)768
Coding sequence length (bp)768
Protein length (aa) 256

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10075 CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family 1.7E-19 84 221

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P32496|RPN12_YEAST 26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN12 PE=1 SV=3 3 255 2.0E-37
sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1 10 228 8.0E-37
sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=3 10 255 5.0E-30
sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii GN=PSMD8 PE=2 SV=2 10 255 1.0E-29
sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=2 10 255 3.0E-29
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Swissprot ID Swissprot Description Start End E-value
sp|P32496|RPN12_YEAST 26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN12 PE=1 SV=3 3 255 2.0E-37
sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1 10 228 8.0E-37
sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=3 10 255 5.0E-30
sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii GN=PSMD8 PE=2 SV=2 10 255 1.0E-29
sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=2 10 255 3.0E-29
sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2 13 255 5.0E-29
sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=1 SV=2 10 255 6.0E-29
sp|Q9SGW3|PSD8A_ARATH 26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1 3 255 6.0E-29
sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=3 SV=1 20 255 6.0E-24
sp|Q9FHY0|PSD8B_ARATH Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPN12B PE=5 SV=2 67 255 8.0E-22
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear export signal 0.7665 0.6451 0.0382 0.1573 0.0343 0.0035 0.1428 0.4257 0.3417 0.0143

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5008
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|544
Ophiocordyceps australis map64 (Brazil) OphauB2|4819
Ophiocordyceps camponoti-floridani Ophcf2|01770
Ophiocordyceps camponoti-rufipedis Ophun1|915
Ophiocordyceps kimflemingae Ophio5|4970
Ophiocordyceps subramaniannii Hirsu2|2421 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2421
MSYPEANGLLSKAKIALLKLNALTPAPSVPSNLLALARETYEQGALFAIRARTPAAFIRYVQQLQPFYELPSARI
APNLLERNKVTGLSLLLLLTQGRYAEFHSELESLANRDGGGSSGDVEGDKYLGYPIRLERWLMEGSYDRVWKAMK
SSEVPCDEYSVFSEILKNQIRSEIASSSERAYPSLPISSTKSLLFLDSEGDVFQFAQHRGWLVRDGHIHFPDAVE
PGDEGSQSKDLSQMVIENALGYARELETIV*
Coding >Hirsu2|2421
ATGAGCTACCCCGAGGCCAACGGCCTCCTGTCCAAGGCCAAAATCGCCCTGCTAAAGCTCAACGCCCTCACCCCC
GCGCCCTCGGTCCCGTCCAACCTTCTCGCCCTCGCGCGCGAAACCTACGAGCAGGGAGCCCTCTTTGCGATCCGC
GCTCGCACTCCCGCAGCCTTCATCCGCTACGTCCAGCAGCTCCAGCCCTTTTACGAACTCCCCTCCGCGAGGATA
GCTCCCAACCTACTCGAGCGCAACAAGGTCACGGGGCTCAGCCTGCTACTCCTGCTCACCCAGGGCCGTTATGCC
GAGTTTCATTCCGAGCTCGAGAGCCTAGCCAATCGAGACGGCGGCGGCAGCTCTGGGGACGTCGAGGGCGACAAA
TATCTTGGATATCCTATTCGGCTGGAACGTTGGCTGATGGAGGGAAGCTACGATCGAGTGTGGAAGGCCATGAAA
AGCAGCGAGGTACCCTGCGATGAATATAGCGTTTTTTCCGAGATTCTCAAGAATCAAATCCGTTCCGAAATCGCC
AGCAGCAGTGAACGCGCCTACCCAAGCCTTCCCATCAGCTCAACCAAGTCCCTCTTGTTTCTCGACTCTGAGGGC
GACGTCTTTCAGTTCGCCCAACATCGGGGATGGCTTGTGAGGGACGGACATATACATTTTCCCGATGCTGTCGAA
CCCGGGGACGAAGGAAGCCAGAGCAAGGATCTCAGTCAGATGGTCATCGAGAACGCTCTTGGCTACGCACGCGAA
CTTGAGACCATCGTTTAG
Transcript >Hirsu2|2421
ATGAGCTACCCCGAGGCCAACGGCCTCCTGTCCAAGGCCAAAATCGCCCTGCTAAAGCTCAACGCCCTCACCCCC
GCGCCCTCGGTCCCGTCCAACCTTCTCGCCCTCGCGCGCGAAACCTACGAGCAGGGAGCCCTCTTTGCGATCCGC
GCTCGCACTCCCGCAGCCTTCATCCGCTACGTCCAGCAGCTCCAGCCCTTTTACGAACTCCCCTCCGCGAGGATA
GCTCCCAACCTACTCGAGCGCAACAAGGTCACGGGGCTCAGCCTGCTACTCCTGCTCACCCAGGGCCGTTATGCC
GAGTTTCATTCCGAGCTCGAGAGCCTAGCCAATCGAGACGGCGGCGGCAGCTCTGGGGACGTCGAGGGCGACAAA
TATCTTGGATATCCTATTCGGCTGGAACGTTGGCTGATGGAGGGAAGCTACGATCGAGTGTGGAAGGCCATGAAA
AGCAGCGAGGTACCCTGCGATGAATATAGCGTTTTTTCCGAGATTCTCAAGAATCAAATCCGTTCCGAAATCGCC
AGCAGCAGTGAACGCGCCTACCCAAGCCTTCCCATCAGCTCAACCAAGTCCCTCTTGTTTCTCGACTCTGAGGGC
GACGTCTTTCAGTTCGCCCAACATCGGGGATGGCTTGTGAGGGACGGACATATACATTTTCCCGATGCTGTCGAA
CCCGGGGACGAAGGAAGCCAGAGCAAGGATCTCAGTCAGATGGTCATCGAGAACGCTCTTGGCTACGCACGCGAA
CTTGAGACCATCGTTTAG
Gene >Hirsu2|2421
ATGAGCTACCCCGAGGCCAACGGCCTCCTGTCCAAGGCCAAAATCGCCCTGCTAAAGCTCAACGCCCTCACCCCC
GCGCCCTCGGTCCCGTCCAACCTTCTCGCCCTCGCGCGCGAAACCTACGAGCAGGGAGCCCTCTTTGCGATCCGC
GCTCGCACTCCCGCAGCCTTCATCCGCTACGTCCAGCAGCTCCAGCCCTTTTACGAACTCCCCTCCGCGAGGATA
GCTCCCAACCTACTCGAGCGCAACAAGGTCACGGGGCTCAGCCTGCTACTCCTGCTCACCCAGGGCCGTTATGCC
GAGTTTCATTCCGAGCTCGAGAGCCTAGCCAATCGAGACGGCGGCGGCAGCTCTGGGGACGTCGAGGGCGACAAA
TATCTTGGATATCCTATTCGGCTGGAACGTTGGCTGATGGAGGGAAGCTACGATCGAGTGTGGAAGGCCATGAAA
AGCAGCGAGGTACCCTGCGATGAATATAGCGTTTTTTCCGAGGTGGGCCACATCTAGTCCCCAGCGCCTACGTCC
TGTCTACCCGGGCTAATTTCCCCCCCCCCCCCACCCCCCCTTGCAGATTCTCAAGAATCAAATCCGTTCCGAAAT
CGCCAGCAGCAGTGAACGCGCCTACCCAAGCCTTCCCATCAGCTCAACCAAGTCCCTCTTGTTTCTCGACTCTGA
GGGCGACGTCTTTCAGTTCGCCCAACATCGGGGATGGCTTGTGAGGGACGGACATATACATTTTCCCGATGCTGT
CGAACCCGGGGACGAAGGAAGCCAGAGCAAGGATCTCAGTCAGATGGTCATCGAGAACGCTCTTGGCTACGCACG
CGAACTTGAGACCATCGTTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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