Protein ID | Hirsu2|2413 |
Gene name | |
Location | Contig_1577:2483..3588 |
Strand | + |
Gene length (bp) | 1105 |
Transcript length (bp) | 942 |
Coding sequence length (bp) | 942 |
Protein length (aa) | 314 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01454 | MAGE | MAGE homology domain | 4.0E-64 | 61 | 256 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9Y7U4|NSE3_SCHPO | Non-structural maintenance of chromosome element 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse3 PE=1 SV=1 | 51 | 279 | 5.0E-11 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.2002 | 0.9327 | 0.3186 | 0.0168 | 0.1527 | 0.0021 | 0.0107 | 0.0125 | 0.0073 | 0.0045 |
Orthofinder run ID | 4 |
Orthogroup | 2082 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2413 MPPSQRRRRPADEEESEEDARPRQRPNRMDSDDEAGESSGDGMDVDSPAGDDVDRQLAKKLVRYAISCEYSRTPI RRDGIKERVLGNRGRSFKKVYQLAQQQLREVWGMELRELPIREKMSLQEKRQAMKSSSQVKTGSGAYILSSTLPA RYRSASILRPSKVPSEEDEATYTAFYTLVVALIWLSAGELSEQKLKRHLMRLNADQNLSNEKTETTIRRMEKQGY VVKKVERPPVGQDGDQTVTWHVGPRAKEEIGLDGVMGMVREVYREWTPDLDKKLRASLGLKAQQPDTRGEGAAEA SGNGGQTDEGEDE* |
Coding | >Hirsu2|2413 ATGCCTCCGTCGCAGAGGAGACGGCGCCCGGCCGACGAGGAAGAATCAGAGGAGGACGCGCGCCCGCGACAACGC CCGAATCGCATGGATTCGGACGACGAAGCCGGCGAATCATCTGGCGATGGCATGGACGTGGACAGCCCGGCAGGC GATGATGTCGACAGACAGCTGGCGAAAAAGCTGGTTCGGTATGCCATCTCATGCGAATATTCACGAACGCCTATT CGGAGAGACGGGATAAAGGAGAGAGTCCTCGGCAACCGAGGTCGCTCTTTCAAGAAGGTGTATCAACTGGCGCAG CAACAATTACGAGAGGTTTGGGGCATGGAGCTGCGGGAACTGCCCATTCGAGAAAAGATGTCTCTGCAGGAGAAG CGGCAAGCCATGAAGTCGAGCTCCCAGGTGAAGACGGGATCCGGGGCGTACATCCTCAGCTCGACACTGCCGGCA CGATACCGGAGCGCGTCGATACTGCGGCCGTCCAAGGTGCCGAGCGAGGAGGACGAGGCTACGTACACGGCGTTT TACACGCTGGTCGTCGCGCTGATCTGGCTGAGCGCCGGCGAGCTCAGCGAGCAGAAGCTCAAGCGCCATCTCATG CGGCTGAACGCCGATCAAAACTTGTCCAACGAGAAGACCGAGACGACGATCCGGAGAATGGAGAAGCAGGGGTAC GTGGTGAAGAAGGTGGAGCGTCCACCGGTAGGCCAGGACGGGGACCAAACAGTCACCTGGCACGTCGGGCCGCGG GCCAAGGAGGAGATCGGACTCGACGGCGTCATGGGCATGGTGCGTGAGGTCTACAGAGAATGGACTCCCGACCTG GACAAGAAGCTTCGTGCCAGCTTGGGGCTCAAGGCGCAGCAGCCCGATACGAGGGGGGAGGGCGCGGCAGAGGCC AGCGGGAACGGGGGACAGACGGACGAGGGCGAAGACGAATAA |
Transcript | >Hirsu2|2413 ATGCCTCCGTCGCAGAGGAGACGGCGCCCGGCCGACGAGGAAGAATCAGAGGAGGACGCGCGCCCGCGACAACGC CCGAATCGCATGGATTCGGACGACGAAGCCGGCGAATCATCTGGCGATGGCATGGACGTGGACAGCCCGGCAGGC GATGATGTCGACAGACAGCTGGCGAAAAAGCTGGTTCGGTATGCCATCTCATGCGAATATTCACGAACGCCTATT CGGAGAGACGGGATAAAGGAGAGAGTCCTCGGCAACCGAGGTCGCTCTTTCAAGAAGGTGTATCAACTGGCGCAG CAACAATTACGAGAGGTTTGGGGCATGGAGCTGCGGGAACTGCCCATTCGAGAAAAGATGTCTCTGCAGGAGAAG CGGCAAGCCATGAAGTCGAGCTCCCAGGTGAAGACGGGATCCGGGGCGTACATCCTCAGCTCGACACTGCCGGCA CGATACCGGAGCGCGTCGATACTGCGGCCGTCCAAGGTGCCGAGCGAGGAGGACGAGGCTACGTACACGGCGTTT TACACGCTGGTCGTCGCGCTGATCTGGCTGAGCGCCGGCGAGCTCAGCGAGCAGAAGCTCAAGCGCCATCTCATG CGGCTGAACGCCGATCAAAACTTGTCCAACGAGAAGACCGAGACGACGATCCGGAGAATGGAGAAGCAGGGGTAC GTGGTGAAGAAGGTGGAGCGTCCACCGGTAGGCCAGGACGGGGACCAAACAGTCACCTGGCACGTCGGGCCGCGG GCCAAGGAGGAGATCGGACTCGACGGCGTCATGGGCATGGTGCGTGAGGTCTACAGAGAATGGACTCCCGACCTG GACAAGAAGCTTCGTGCCAGCTTGGGGCTCAAGGCGCAGCAGCCCGATACGAGGGGGGAGGGCGCGGCAGAGGCC AGCGGGAACGGGGGACAGACGGACGAGGGCGAAGACGAATAA |
Gene | >Hirsu2|2413 ATGCCTCCGTCGCAGAGGAGACGGCGCCCGGTTCGTCAAGCTGTCTATCGGCGGACGTTCCGAGTTGACTAAGTG AGCAGGCAGGCCGACGAGGAAGAATCAGAGGAGGACGCGCGCCCGCGACAACGCCCGAATCGCATGGATTCGGAC GACGAAGCCGGCGAATCATCTGGCGATGGCATGGACGTGGACAGCCCGGCAGGCGATGATGTCGACAGACAGCTG GCGAAAAAGCTGGTTCGGTATGCCATCTCATGCGAATATTCACGAACGCCTATTCGGAGAGACGGGATAAAGGAG AGAGGTACGGCCCCGAGCACCAACGACATTTGTTTTGGGCATGTCGCTGATACGCCCGTCCAGTCCTCGGCAACC GAGGTCGCTCTTTCAAGAAGGTGTATCAACTGGCGCAGCAACAATTACGAGAGGTTTGGGGCATGGAGCTGCGGG AACTGCCCATTCGAGAAAAGATGTCTCTGCAGGAGAAGCGGCAAGGTAGGACGGGGCACGGCGCCGGTTGAAGCC GAGGCTAAATCGCAACGCAGCCATGAAGTCGAGCTCCCAGGTGAAGACGGGATCCGGGGCGTACATCCTCAGCTC GACACTGCCGGCACGATACCGGAGCGCGTCGATACTGCGGCCGTCCAAGGTGCCGAGCGAGGAGGACGAGGCTAC GTACACGGCGTTTTACACGCTGGTCGTCGCGCTGATCTGGCTGAGCGCCGGCGAGCTCAGCGAGCAGAAGCTCAA GCGCCATCTCATGCGGCTGAACGCCGATCAAAACTTGTCCAACGAGAAGACCGAGACGACGATCCGGAGAATGGA GAAGCAGGGGTACGTGGTGAAGAAGGTGGAGCGTCCACCGGTAGGCCAGGACGGGGACCAAACAGTCACCTGGCA CGTCGGGCCGCGGGCCAAGGAGGAGATCGGACTCGACGGCGTCATGGGCATGGTGCGTGAGGTCTACAGAGAATG GACTCCCGACCTGGACAAGAAGCTTCGTGCCAGCTTGGGGCTCAAGGCGCAGCAGCCCGATACGAGGGGGGAGGG CGCGGCAGAGGCCAGCGGGAACGGGGGACAGACGGACGAGGGCGAAGACGAATAA |