© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2412 |
| Gene name | |
| Location | Contig_1577:288..1396 |
| Strand | - |
| Gene length (bp) | 1108 |
| Transcript length (bp) | 945 |
| Coding sequence length (bp) | 945 |
| Protein length (aa) | 315 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14611 | SLS | Mitochondrial inner-membrane-bound regulator | 2.7E-29 | 67 | 288 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005743 | mitochondrial inner membrane | Yes |
| GO:0031966 | mitochondrial membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0019866 | organelle inner membrane | No |
| GO:0031090 | organelle membrane | No |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.2306 | 0.1561 | 0.257 | 0.0611 | 0.9359 | 0.1292 | 0.0416 | 0.0476 | 0.0735 | 0.0182 |
| Orthofinder run ID | 4 |
| Orthogroup | 757 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2412 MNTLINALRYGFTVAQLEGYSQFRAKTSSRVKAADTPSYPWMTETHPWTAPAVGFWNTWVPKHATPKTKAIARLL REAWNLKLEEEETIPGEMMIRLSPRVFQAATASPNRILETSSNEYLDVPSDEAIKLVPEQYGLRIRGTKAKTAAI LARIDELVRSEKTKVITVEGVEEDFSETALKELERLTGTSLHYSKLKSELSVSWIPGDGPGEASNATEKDGATAS EGTEDPADIVLRHLTAHRVDALRNEVQLLTSTGKSRAADAMFVRHYRENRALSWVDRLQPWWRCVSPVGKEPLPS GDGRASLLDAHPTA* |
| Coding | >Hirsu2|2412 ATGAACACACTGATAAATGCCCTTCGATACGGGTTTACCGTGGCCCAGCTGGAGGGGTACTCGCAATTCAGAGCG AAGACGAGCAGCCGCGTCAAAGCAGCCGATACGCCATCATACCCGTGGATGACCGAAACCCATCCGTGGACCGCG CCTGCTGTTGGTTTCTGGAACACCTGGGTGCCGAAACATGCGACCCCCAAGACCAAGGCAATAGCTCGTCTTCTC CGGGAGGCATGGAACTTGAAACTCGAGGAAGAGGAGACCATACCCGGCGAGATGATGATTCGTCTATCACCTCGT GTCTTTCAAGCAGCGACCGCATCCCCAAACCGTATCCTGGAAACCTCGAGCAACGAGTATCTGGACGTACCCAGC GACGAAGCGATAAAGTTGGTACCGGAACAGTACGGGCTGAGGATACGTGGTACCAAAGCAAAGACGGCCGCGATC CTTGCACGAATAGACGAGCTGGTCCGCTCGGAGAAGACGAAAGTGATTACTGTCGAGGGCGTCGAGGAAGACTTC TCCGAGACAGCGTTGAAAGAGCTCGAGAGATTGACGGGCACGAGTCTTCACTACAGCAAGCTGAAATCGGAGCTG TCAGTCTCGTGGATTCCCGGCGATGGCCCCGGCGAAGCGAGCAATGCGACAGAAAAAGACGGAGCGACCGCAAGC GAGGGCACTGAGGATCCGGCCGACATCGTCCTGCGGCACCTGACGGCCCACCGGGTGGACGCACTCCGCAACGAG GTCCAGCTGCTGACCTCGACGGGAAAGTCCCGCGCGGCGGACGCCATGTTCGTCCGGCATTACCGCGAGAACCGG GCGCTGTCGTGGGTGGACCGACTGCAGCCGTGGTGGCGATGCGTCAGCCCCGTCGGCAAGGAGCCCCTCCCCTCG GGCGACGGGCGAGCCTCCCTCCTCGACGCGCACCCAACTGCGTGA |
| Transcript | >Hirsu2|2412 ATGAACACACTGATAAATGCCCTTCGATACGGGTTTACCGTGGCCCAGCTGGAGGGGTACTCGCAATTCAGAGCG AAGACGAGCAGCCGCGTCAAAGCAGCCGATACGCCATCATACCCGTGGATGACCGAAACCCATCCGTGGACCGCG CCTGCTGTTGGTTTCTGGAACACCTGGGTGCCGAAACATGCGACCCCCAAGACCAAGGCAATAGCTCGTCTTCTC CGGGAGGCATGGAACTTGAAACTCGAGGAAGAGGAGACCATACCCGGCGAGATGATGATTCGTCTATCACCTCGT GTCTTTCAAGCAGCGACCGCATCCCCAAACCGTATCCTGGAAACCTCGAGCAACGAGTATCTGGACGTACCCAGC GACGAAGCGATAAAGTTGGTACCGGAACAGTACGGGCTGAGGATACGTGGTACCAAAGCAAAGACGGCCGCGATC CTTGCACGAATAGACGAGCTGGTCCGCTCGGAGAAGACGAAAGTGATTACTGTCGAGGGCGTCGAGGAAGACTTC TCCGAGACAGCGTTGAAAGAGCTCGAGAGATTGACGGGCACGAGTCTTCACTACAGCAAGCTGAAATCGGAGCTG TCAGTCTCGTGGATTCCCGGCGATGGCCCCGGCGAAGCGAGCAATGCGACAGAAAAAGACGGAGCGACCGCAAGC GAGGGCACTGAGGATCCGGCCGACATCGTCCTGCGGCACCTGACGGCCCACCGGGTGGACGCACTCCGCAACGAG GTCCAGCTGCTGACCTCGACGGGAAAGTCCCGCGCGGCGGACGCCATGTTCGTCCGGCATTACCGCGAGAACCGG GCGCTGTCGTGGGTGGACCGACTGCAGCCGTGGTGGCGATGCGTCAGCCCCGTCGGCAAGGAGCCCCTCCCCTCG GGCGACGGGCGAGCCTCCCTCCTCGACGCGCACCCAACTGCGTGA |
| Gene | >Hirsu2|2412 ATGAACACACTGATAAATGCCCTTCGATACGGGTTTACCGTGGCCCAGCTGGAGGGGTACTCGCAATTCAGAGCG AAGACGAGCAGCCGCGTCAAAGCAGCCGATACGCCATCATACCCGTGGATGACCGAAACCCATCCGTGGACCGCG CCTGCTGTTGGTTTCTGGAACACCTGGGTGCCGAAACATGCGACCCCCAAGACCAAGGCAATAGCTCGTCTTCTC CGGGAGGCATGGAACTTGAAACTCGAGGAAGAGGAGACCATACCCGGCGAGATGATGATTCGTCTATCACCTCGT GTCTTTCAAGCAGCGACCGGTACGTGGCAACCCATGTTCATAACCGGGCATTGAATTCTCAACATGGCCTACAGC ATCCCCAAACCGTATCCTGGAAACCTCGAGCAACGAGTATCTGGACGTACCCAGCGACGAAGCGATAAAGTTGGT ACCGGAACAGTACGGGCTGAGGATACGTGGTACCAAAGCAAAGACGGCCGCGATCCTTGCACGAATAGACGAGCT GGTCCGCTCGGAGAAGACGAAAGTGATTACTGTCGAGGGCGTCGAGGAAGACTTCTCCGAGACAGCGTTGAAAGA GCTCGAGAGATTGACGGGCACGAGTCTTCACTACAGCAAGCTGAAATCGGTATAGCCCCTCTCCCCGAAGTCGTG TCGGAGAAGAGTAAGATCTGATTGTGTCACAAGGAGCTGTCAGTCTCGTGGATTCCCGGCGATGGCCCCGGCGAA GCGAGCAATGCGACAGAAAAAGACGGAGCGACCGCAAGCGAGGGCACTGAGGATCCGGCCGACATCGTCCTGCGG CACCTGACGGCCCACCGGGTGGACGCACTCCGCAACGAGGTCCAGCTGCTGACCTCGACGGGAAAGTCCCGCGCG GCGGACGCCATGTTCGTCCGGCATTACCGCGAGAACCGGGCGCTGTCGTGGGTGGACCGACTGCAGCCGTGGTGG CGATGCGTCAGCCCCGTCGGCAAGGAGCCCCTCCCCTCGGGCGACGGGCGAGCCTCCCTCCTCGACGCGCACGTG AAGCTGGCCAAGTCCGACTTCAAGAAGACGTCGCGGGCGGCGGCAGCCAACTGCGTGA |