Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2409
Gene name
LocationContig_1576:86..629
Strand-
Gene length (bp)543
Transcript length (bp)321
Coding sequence length (bp)321
Protein length (aa) 107

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00400 WD40 WD domain, G-beta repeat 1.0E-03 6 44
PF00400 WD40 WD domain, G-beta repeat 7.1E-04 56 93

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9DAJ4|WDR83_MOUSE WD repeat domain-containing protein 83 OS=Mus musculus GN=Wdr83 PE=1 SV=1 3 102 3.0E-17
sp|Q5BLX8|WDR83_RAT WD repeat domain-containing protein 83 OS=Rattus norvegicus GN=Wdr83 PE=1 SV=1 3 102 2.0E-16
sp|Q9BRX9|WDR83_HUMAN WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1 3 102 6.0E-16
sp|Q6DH44|WDR83_DANRE WD repeat domain-containing protein 83 OS=Danio rerio GN=wdr83 PE=2 SV=1 1 102 1.0E-15
sp|Q5XGI5|WDR83_XENTR WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1 3 102 2.0E-15
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9DAJ4|WDR83_MOUSE WD repeat domain-containing protein 83 OS=Mus musculus GN=Wdr83 PE=1 SV=1 3 102 3.0E-17
sp|Q5BLX8|WDR83_RAT WD repeat domain-containing protein 83 OS=Rattus norvegicus GN=Wdr83 PE=1 SV=1 3 102 2.0E-16
sp|Q9BRX9|WDR83_HUMAN WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1 3 102 6.0E-16
sp|Q6DH44|WDR83_DANRE WD repeat domain-containing protein 83 OS=Danio rerio GN=wdr83 PE=2 SV=1 1 102 1.0E-15
sp|Q5XGI5|WDR83_XENTR WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1 3 102 2.0E-15
sp|Q3KQ62|WDR83_XENLA WD repeat domain-containing protein 83 OS=Xenopus laevis GN=wdr83 PE=2 SV=1 3 102 2.0E-15
sp|Q9C1X0|YN55_SCHPO Uncharacterized WD repeat-containing protein C713.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC713.05 PE=3 SV=1 17 102 5.0E-14
sp|Q54H44|WDR83_DICDI WD repeat domain-containing protein 83 homolog OS=Dictyostelium discoideum GN=morg1 PE=3 SV=1 11 102 1.0E-09
sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=3 SV=1 11 96 7.0E-08
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 11 101 1.0E-07
sp|B4HND9|WDR48_DROSE WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1 28 99 1.0E-06
sp|Q21215|GBLP_CAEEL Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3 6 93 1.0E-06
sp|P83774|GBLP_CANAL Guanine nucleotide-binding protein subunit beta-like protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ASC1 PE=1 SV=2 7 93 1.0E-06
sp|B3NSK1|WDR48_DROER WD repeat-containing protein 48 homolog OS=Drosophila erecta GN=GG22678 PE=3 SV=1 28 99 1.0E-06
sp|B4GIJ0|WDR48_DROPE WD repeat-containing protein 48 homolog OS=Drosophila persimilis GN=GL16745 PE=3 SV=1 28 99 1.0E-06
sp|Q28YY2|WDR48_DROPS WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21511 PE=3 SV=2 28 99 1.0E-06
sp|Q1LZ08|WDR48_DROME WD repeat-containing protein 48 homolog OS=Drosophila melanogaster GN=CG9062 PE=2 SV=1 28 99 1.0E-06
sp|B4QB64|WDR48_DROSI WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1 28 99 1.0E-06
sp|B3MET8|WDR48_DROAN WD repeat-containing protein 48 homolog OS=Drosophila ananassae GN=GF12420 PE=3 SV=1 28 99 1.0E-06
sp|B4P7H8|WDR48_DROYA WD repeat-containing protein 48 homolog OS=Drosophila yakuba GN=GE13034 PE=3 SV=1 28 99 1.0E-06
sp|B4KRQ4|WDR48_DROMO WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1 28 99 2.0E-06
sp|P0CY34|TUP1_CANAL Transcriptional repressor TUP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TUP1 PE=2 SV=1 13 97 2.0E-06
sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1) GN=TUP1 PE=3 SV=1 13 97 2.0E-06
sp|B4J8H6|WDR48_DROGR WD repeat-containing protein 48 homolog OS=Drosophila grimshawi GN=GH21936 PE=3 SV=1 28 99 2.0E-06
sp|B4MFM2|WDR48_DROVI WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1 28 99 2.0E-06
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 11 101 3.0E-06
sp|Q16MY0|WDR48_AEDAE WD repeat-containing protein 48 homolog OS=Aedes aegypti GN=AAEL012158 PE=3 SV=1 28 99 3.0E-06
sp|B0X2V9|WDR48_CULQU WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CPIJ014111 PE=3 SV=1 28 99 4.0E-06
sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1 10 101 4.0E-06
sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 10 101 5.0E-06
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 11 101 6.0E-06
sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tup12 PE=1 SV=2 18 94 6.0E-06
sp|Q6S7B0|TAF5_ARATH Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 PE=1 SV=1 30 97 7.0E-06
[Show less]

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.5334 0.3408 0.0694 0.0846 0.3065 0.0763 0.1032 0.3235 0.2826 0.1299

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5003
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6948
Ophiocordyceps australis map64 (Brazil) OphauB2|5843
Ophiocordyceps camponoti-floridani Ophcf2|04840
Ophiocordyceps camponoti-rufipedis Ophun1|5865
Ophiocordyceps kimflemingae Ophio5|7840
Ophiocordyceps subramaniannii Hirsu2|2409 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2409
MAFPDKPVAHLLGSNGPVHAVAYSASPGTYILTGSADRTVRLYNPQGGEAAAGRGRLIQTYAAHGYEVLSLDVAG
DNEQFVSAGGDRSVFVWDVATATATRRRTDS*
Coding >Hirsu2|2409
ATGGCCTTCCCCGATAAGCCTGTGGCGCATCTGCTCGGCTCGAATGGACCGGTCCACGCCGTCGCGTACTCGGCC
TCGCCGGGGACGTACATCCTGACGGGGTCGGCGGACCGGACGGTGCGGCTGTACAACCCGCAGGGCGGCGAGGCG
GCGGCGGGGCGGGGCCGGCTGATCCAGACGTACGCGGCGCACGGGTACGAGGTGCTGAGCCTGGACGTGGCGGGC
GACAACGAGCAGTTCGTGTCGGCGGGCGGCGACCGCAGCGTCTTCGTGTGGGACGTGGCGACGGCGACGGCGACG
CGGCGGCGGACGGACTCGTAA
Transcript >Hirsu2|2409
ATGGCCTTCCCCGATAAGCCTGTGGCGCATCTGCTCGGCTCGAATGGACCGGTCCACGCCGTCGCGTACTCGGCC
TCGCCGGGGACGTACATCCTGACGGGGTCGGCGGACCGGACGGTGCGGCTGTACAACCCGCAGGGCGGCGAGGCG
GCGGCGGGGCGGGGCCGGCTGATCCAGACGTACGCGGCGCACGGGTACGAGGTGCTGAGCCTGGACGTGGCGGGC
GACAACGAGCAGTTCGTGTCGGCGGGCGGCGACCGCAGCGTCTTCGTGTGGGACGTGGCGACGGCGACGGCGACG
CGGCGGCGGACGGACTCGTAA
Gene >Hirsu2|2409
ATGGCCTTCCCCGATAAGCCTGTGGCGCATCTGCTCGGCTCGAATGGTGCGTCCTGCGCAATCCCTTCCCCCTTT
TGCTTTCCGGTCTACTGCTGCTCCGGCGCGGCCGTTTCCGGCGTGTGAAGCTAAGGCCGGGGGTCCTAATCCGCG
TTGCGCTGCCACAGGACCGGTCCACGCCGTCGCGTACTCGGCCTCGCCGGGGACGTACATCCTGACGGGGTCGGC
GGACCGGACGGTGCGGCTGTACAACCCGCAGGGCGGCGAGGCGGCGGCGGGGCGGGGCCGGCTGATCCAGACGTA
CGCGGCGCACGGGTACGAGGTGCTGAGCCTGGACGTGGCGGGCGACAACGAGCAGTTCGTGTCGGCGGGCGGCGA
CCGCAGCGTCTTCGTGTGGGACGTGGCGACGGCGACGGCGACGCGGCGGCGGACGGACTCGTGCTGGTGGCGGCC
GAGGACGAAGACGTCGTCGTCGACGGAGCTCCGACCGCGGCGGCAGCAGAGGGAGGCGGAGGAGGACGAGGAGCG
GAGGCGGTCGGGAGGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail