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| Protein ID | Hirsu2|2405 |
| Gene name | |
| Location | Contig_1573:5515..5731 |
| Strand | + |
| Gene length (bp) | 216 |
| Transcript length (bp) | 216 |
| Coding sequence length (bp) | 216 |
| Protein length (aa) | 72 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00241 | Cofilin_ADF | Cofilin/tropomyosin-type actin-binding protein | 6.7E-08 | 7 | 63 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q56JZ9|GMFG_BOVIN | Glia maturation factor gamma OS=Bos taurus GN=GMFG PE=2 SV=1 | 11 | 63 | 2.0E-08 |
| sp|O60234|GMFG_HUMAN | Glia maturation factor gamma OS=Homo sapiens GN=GMFG PE=1 SV=1 | 11 | 63 | 3.0E-08 |
| sp|Q9ERL7|GMFG_MOUSE | Glia maturation factor gamma OS=Mus musculus GN=Gmfg PE=1 SV=1 | 11 | 63 | 3.0E-08 |
| sp|Q9CQI3|GMFB_MOUSE | Glia maturation factor beta OS=Mus musculus GN=Gmfb PE=1 SV=3 | 8 | 69 | 9.0E-08 |
| sp|Q5R6P6|GMFB_PONAB | Glia maturation factor beta OS=Pongo abelii GN=GMFB PE=2 SV=3 | 8 | 69 | 9.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q56JZ9|GMFG_BOVIN | Glia maturation factor gamma OS=Bos taurus GN=GMFG PE=2 SV=1 | 11 | 63 | 2.0E-08 |
| sp|O60234|GMFG_HUMAN | Glia maturation factor gamma OS=Homo sapiens GN=GMFG PE=1 SV=1 | 11 | 63 | 3.0E-08 |
| sp|Q9ERL7|GMFG_MOUSE | Glia maturation factor gamma OS=Mus musculus GN=Gmfg PE=1 SV=1 | 11 | 63 | 3.0E-08 |
| sp|Q9CQI3|GMFB_MOUSE | Glia maturation factor beta OS=Mus musculus GN=Gmfb PE=1 SV=3 | 8 | 69 | 9.0E-08 |
| sp|Q5R6P6|GMFB_PONAB | Glia maturation factor beta OS=Pongo abelii GN=GMFB PE=2 SV=3 | 8 | 69 | 9.0E-08 |
| sp|P60983|GMFB_HUMAN | Glia maturation factor beta OS=Homo sapiens GN=GMFB PE=1 SV=2 | 8 | 69 | 9.0E-08 |
| sp|P60984|GMFB_BOVIN | Glia maturation factor beta OS=Bos taurus GN=GMFB PE=1 SV=2 | 8 | 69 | 9.0E-08 |
| sp|Q63228|GMFB_RAT | Glia maturation factor beta OS=Rattus norvegicus GN=Gmfb PE=1 SV=2 | 8 | 69 | 1.0E-07 |
| sp|Q80T18|GMFG_RAT | Glia maturation factor gamma OS=Rattus norvegicus GN=Gmfg PE=2 SV=1 | 11 | 63 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003779 | actin binding | Yes |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0005515 | protein binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6338 | 0.4568 | 0.0175 | 0.1523 | 0.0395 | 0.0055 | 0.1542 | 0.1634 | 0.0618 | 0.0005 |
| Orthofinder run ID | 4 |
| Orthogroup | 2078 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2405 LTAAVAVSQPDGRVSVPYVLLYYLPETCNAEVRMLYAGAKELMRNTSEVGRVIDIGSADDLAEIPKKLGSE* |
| Coding | >Hirsu2|2405 CTGACCGCCGCCGTTGCCGTGTCGCAGCCGGACGGGCGGGTGTCGGTGCCGTATGTGCTACTCTATTATCTGCCC GAGACCTGCAATGCCGAGGTGCGGATGCTGTACGCCGGCGCCAAGGAACTCATGCGCAATACGAGCGAGGTGGGC AGGGTCATCGACATCGGGTCGGCCGACGACCTCGCCGAGATACCCAAGAAGCTGGGGTCCGAGTGA |
| Transcript | >Hirsu2|2405 CTGACCGCCGCCGTTGCCGTGTCGCAGCCGGACGGGCGGGTGTCGGTGCCGTATGTGCTACTCTATTATCTGCCC GAGACCTGCAATGCCGAGGTGCGGATGCTGTACGCCGGCGCCAAGGAACTCATGCGCAATACGAGCGAGGTGGGC AGGGTCATCGACATCGGGTCGGCCGACGACCTCGCCGAGATACCCAAGAAGCTGGGGTCCGAGTGA |
| Gene | >Hirsu2|2405 CTGACCGCCGCCGTTGCCGTGTCGCAGCCGGACGGGCGGGTGTCGGTGCCGTATGTGCTACTCTATTATCTGCCC GAGACCTGCAATGCCGAGGTGCGGATGCTGTACGCCGGCGCCAAGGAACTCATGCGCAATACGAGCGAGGTGGGC AGGGTCATCGACATCGGGTCGGCCGACGACCTCGCCGAGATACCCAAGAAGCTGGGGTCCGAGTGA |