Protein ID | Hirsu2|2403 |
Gene name | |
Location | Contig_1572:5139..5821 |
Strand | + |
Gene length (bp) | 682 |
Transcript length (bp) | 615 |
Coding sequence length (bp) | 615 |
Protein length (aa) | 205 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06991 | MFAP1 | Microfibril-associated/Pre-mRNA processing | 1.2E-11 | 126 | 197 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.2794 | 0.5121 | 0.0477 | 0.039 | 0.1026 | 0.0119 | 0.0356 | 0.0593 | 0.0681 | 0.0012 |
Orthofinder run ID | 4 |
Orthogroup | 520 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2403 MTANPARPARHRAGKPAGGASSSDSDSDAEAPPPAPTIPAPPKAASAGKIISSLSRVDLSARRQELEKAAEARRA AAQRAEALAAEQGFVTEEEDSEGEEDDDEDAESESGSGDDDDDDDDDDEESSEEEAPRRLMMRPKFVPKSQRGQT SKEADGEEARARQAEEEAEKKKRAADELVEEQIRKDLAARAAGKKHWDDEDASG* |
Coding | >Hirsu2|2403 ATGACTGCGAACCCGGCCAGGCCGGCGCGACACCGCGCCGGGAAGCCGGCCGGCGGCGCATCGTCCTCCGACTCG GACAGCGACGCCGAAGCGCCCCCCCCCGCGCCGACGATTCCCGCGCCGCCCAAGGCCGCCAGCGCGGGCAAGATC ATCAGCAGCCTGAGCCGGGTCGATCTCAGCGCGCGCCGCCAGGAGCTGGAGAAGGCTGCCGAGGCGCGCCGGGCC GCGGCGCAGAGGGCCGAGGCGCTGGCCGCCGAGCAGGGCTTCGTGACGGAGGAGGAAGACAGCGAAGGGGAGGAG GACGATGACGAGGACGCCGAGTCGGAGTCCGGGTCGGGCGACGACGACGACGACGACGACGACGACGACGAAGAA AGCAGCGAGGAAGAGGCGCCGCGCAGACTGATGATGCGGCCCAAGTTCGTGCCGAAAAGCCAACGAGGGCAAACG TCGAAGGAGGCGGACGGGGAAGAGGCGCGGGCGCGGCAGGCGGAGGAGGAGGCGGAGAAGAAGAAGAGGGCGGCG GACGAGCTGGTCGAGGAGCAGATCCGGAAGGACCTGGCGGCGCGGGCGGCCGGCAAGAAACACTGGGACGACGAG GACGCGTCCGGCTGA |
Transcript | >Hirsu2|2403 ATGACTGCGAACCCGGCCAGGCCGGCGCGACACCGCGCCGGGAAGCCGGCCGGCGGCGCATCGTCCTCCGACTCG GACAGCGACGCCGAAGCGCCCCCCCCCGCGCCGACGATTCCCGCGCCGCCCAAGGCCGCCAGCGCGGGCAAGATC ATCAGCAGCCTGAGCCGGGTCGATCTCAGCGCGCGCCGCCAGGAGCTGGAGAAGGCTGCCGAGGCGCGCCGGGCC GCGGCGCAGAGGGCCGAGGCGCTGGCCGCCGAGCAGGGCTTCGTGACGGAGGAGGAAGACAGCGAAGGGGAGGAG GACGATGACGAGGACGCCGAGTCGGAGTCCGGGTCGGGCGACGACGACGACGACGACGACGACGACGACGAAGAA AGCAGCGAGGAAGAGGCGCCGCGCAGACTGATGATGCGGCCCAAGTTCGTGCCGAAAAGCCAACGAGGGCAAACG TCGAAGGAGGCGGACGGGGAAGAGGCGCGGGCGCGGCAGGCGGAGGAGGAGGCGGAGAAGAAGAAGAGGGCGGCG GACGAGCTGGTCGAGGAGCAGATCCGGAAGGACCTGGCGGCGCGGGCGGCCGGCAAGAAACACTGGGACGACGAG GACGCGTCCGGCTGA |
Gene | >Hirsu2|2403 ATGACTGCGAACCCGGCCAGGCCGGCGCGACACCGCGCCGGGAAGCCGGCCGGCGGCGCATCGTCCTCCGACTCG GACAGCGACGCCGAAGCGCCCCCCCCCGCGCCGACGATTCCCGCGCCGCCCAAGGCCGCCAGCGCGGGCAAGATC ATCAGCAGCCTGAGCCGGGTCGATCTCAGCGCGCGCCGCCAGGAGCTGGAGAAGGCTGCCGAGGCGCGCCGGGCC GCGGCGCAGAGGGCCGAGGCGCTGGCCGCCGAGCAGGGCTTCGTGACGGAGGAGGAAGACAGCGAAGGGGAGGAG GACGATGACGAGGACGCCGAGTCGGAGTCCGGGTCGGGCGACGACGACGACGACGACGACGACGACGACGAAGAA AGCAGCGAGGAAGAGGCGCCGCGCAGACTGATGATGCGGCCCAAGTTCGTGCCGAAAAGCCAACGAGGGCAAACG TCGAAGGAGGCGGACGGGGAAGAGGCGCGGGCGCGGCAGGCGGAGGAGGAGGCGGAGAAGAAGAAGAGGGCGGCG GACGAGCTGGTCGAGGAGCAGATCCGGAAGGACCTGGCGGCGCGGGCGGCCGGCAAGAAACACTGGGACGACGAG GACGCGTCCGGGTCGGACGTGGACACGACGGACGGGCTCGACCCGGAAGCGGAGGAGGCGGCGTGGCGGGTGCGG GAGCTGA |