Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2402
Gene name
LocationContig_1572:3283..4604
Strand-
Gene length (bp)1321
Transcript length (bp)1005
Coding sequence length (bp)1005
Protein length (aa) 335

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04321 RmlD_sub_bind RmlD substrate binding domain 6.2E-43 6 153
PF04321 RmlD_sub_bind RmlD substrate binding domain 2.7E-11 172 313
PF01370 Epimerase NAD dependent epimerase/dehydratase family 4.0E-20 6 150
PF16363 GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 6.5E-10 39 148
PF02719 Polysacc_synt_2 Polysaccharide biosynthesis protein 5.9E-07 46 115

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1 4 314 5.0E-59
sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 1 314 2.0E-58
sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1 1 314 2.0E-58
sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1 1 314 6.0E-58
sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta OS=Bos taurus GN=MAT2B PE=2 SV=1 1 314 7.0E-58
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Swissprot ID Swissprot Description Start End E-value
sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1 4 314 5.0E-59
sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 1 314 2.0E-58
sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1 1 314 2.0E-58
sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1 1 314 6.0E-58
sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta OS=Bos taurus GN=MAT2B PE=2 SV=1 1 314 7.0E-58
sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=1 SV=1 1 314 3.0E-57
sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1 1 314 3.0E-57
sp|Q5BJJ6|MAT2B_DANRE Methionine adenosyltransferase 2 subunit beta OS=Danio rerio GN=mat2b PE=2 SV=1 4 333 3.0E-56
sp|A0QTF8|RMLD_MYCS2 dTDP-4-dehydrorhamnose reductase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=rmlD PE=1 SV=1 1 149 1.0E-20
sp|D4GU71|AGL14_HALVD Probable low-salt glycan biosynthesis reductase Agl14 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=agl14 PE=3 SV=1 6 150 4.0E-20
sp|P26392|RMLD_SALTY dTDP-4-dehydrorhamnose reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rfbD PE=1 SV=1 5 155 1.0E-17
sp|P29781|RMLD_STRGR dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL PE=1 SV=1 7 150 2.0E-17
sp|P37760|RMLD_ECOLI dTDP-4-dehydrorhamnose reductase OS=Escherichia coli (strain K12) GN=rfbD PE=3 SV=2 5 148 2.0E-16
sp|P37778|RMLD_SHIFL dTDP-4-dehydrorhamnose reductase OS=Shigella flexneri GN=rfbD PE=1 SV=2 5 148 5.0E-16
sp|Q9L9E9|NOVS_STRNV dTDP-4-keto-6-deoxy-D-glucose reductase OS=Streptomyces niveus GN=novS PE=3 SV=1 7 150 1.0E-15
sp|Q46769|RMLD_ECOLX dTDP-4-dehydrorhamnose reductase OS=Escherichia coli GN=rfbD PE=1 SV=1 5 149 6.0E-15
sp|P9WH09|RMLD_MYCTU dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=rmlD PE=1 SV=1 7 152 1.0E-12
sp|P9WH08|RMLD_MYCTO dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=rmlD PE=3 SV=1 7 152 1.0E-12
sp|O66251|RMLD_AGGAC dTDP-4-dehydrorhamnose reductase OS=Aggregatibacter actinomycetemcomitans GN=rmlD PE=1 SV=1 7 149 1.0E-12
sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus subtilis (strain 168) GN=spsK PE=3 SV=3 5 314 7.0E-12
sp|Q2SYI1|RMLD_BURTA dTDP-4-dehydrorhamnose reductase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rmlD PE=1 SV=1 7 148 7.0E-11
sp|P55463|RMLD_RHISN Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03570 PE=3 SV=1 47 148 5.0E-08
sp|P56985|GALE_NEIMB UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B (strain MC58) GN=galE PE=3 SV=1 3 150 9.0E-07
sp|P56986|GALE_NEIMC UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1 3 150 1.0E-06
sp|P56997|GALE_NEIMA UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=galE PE=3 SV=1 3 150 2.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6454 0.539 0.1733 0.0541 0.3913 0.0411 0.0226 0.0559 0.0436 0.0144

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2076
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4147
Ophiocordyceps australis map64 (Brazil) OphauB2|7766
Ophiocordyceps camponoti-floridani Ophcf2|05880
Ophiocordyceps camponoti-floridani Ophcf2|07451
Ophiocordyceps camponoti-rufipedis Ophun1|7206
Ophiocordyceps kimflemingae Ophio5|452
Ophiocordyceps subramaniannii Hirsu2|2402 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2402
MAQRNALVTGATGLLGREVVKAFRTGGWKVKGTGYSRADGIDILRADLTNENEVARVMDEAEPHVVVHCAAEKAP
DKVEQEPERARALNVSASTSLARLTARRGILLIYISTDYVFAGTVGEAPYEADATPKPSNLYGQLKLAGERAVLD
EFDRQQQQQQQQQQQQQQHQQQGGVGVVLRVPLLYGHAETPGESAVNTLMDSVWKAQTEGARIRMDDWARRYPTN
TEDVGRVCRDVAAKYVDAGATLQGLPRILHFSSEDQTTKYGICQRFGEVMGLSTAGIEPNRQGNEAGASSAQRPY
DCHLSTRGLVELGIDVSACDFTAWWRREVGAFRR*
Coding >Hirsu2|2402
ATGGCCCAACGAAACGCGCTCGTGACGGGTGCCACCGGTCTATTGGGCCGGGAGGTCGTCAAGGCCTTTCGGACG
GGCGGATGGAAGGTCAAAGGCACAGGTTATTCGCGGGCGGACGGCATCGACATCCTCAGGGCCGACCTTACCAAC
GAGAACGAGGTGGCGAGGGTGATGGATGAAGCCGAACCGCACGTCGTCGTTCACTGCGCGGCGGAAAAGGCGCCC
GACAAGGTCGAGCAGGAGCCGGAGAGGGCCCGGGCGCTCAACGTGTCGGCCAGCACAAGCCTGGCCAGGCTGACG
GCCCGGCGGGGCATCCTGCTCATCTACATCTCGACCGACTACGTCTTCGCCGGGACGGTGGGCGAGGCCCCCTAC
GAGGCGGATGCGACGCCCAAGCCGAGCAACCTGTACGGGCAGCTGAAGCTAGCGGGCGAGCGGGCGGTGCTGGAC
GAGTTCGACCGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCATCAGCAGCAGGGCGGCGTG
GGGGTGGTGCTGCGCGTGCCGCTGCTGTACGGGCACGCGGAGACGCCGGGCGAGAGCGCCGTCAACACGCTGATG
GACTCGGTCTGGAAAGCCCAGACGGAGGGGGCGAGGATTAGGATGGATGATTGGGCGCGCCGGTATCCAACCAAC
ACGGAGGATGTAGGGCGCGTGTGTCGCGACGTGGCGGCCAAGTATGTGGACGCGGGCGCGACGCTGCAAGGGCTG
CCCCGGATCCTGCACTTCTCGAGCGAGGACCAGACGACCAAGTACGGCATCTGCCAGCGGTTCGGCGAGGTCATG
GGGCTGTCGACGGCGGGCATCGAGCCCAACCGGCAGGGCAACGAGGCGGGTGCGTCGTCGGCGCAGCGGCCGTAC
GACTGCCATCTCAGCACCAGGGGCCTCGTGGAGCTGGGCATTGACGTGTCAGCGTGCGACTTCACCGCCTGGTGG
CGGCGCGAGGTCGGTGCCTTTCGAAGATGA
Transcript >Hirsu2|2402
ATGGCCCAACGAAACGCGCTCGTGACGGGTGCCACCGGTCTATTGGGCCGGGAGGTCGTCAAGGCCTTTCGGACG
GGCGGATGGAAGGTCAAAGGCACAGGTTATTCGCGGGCGGACGGCATCGACATCCTCAGGGCCGACCTTACCAAC
GAGAACGAGGTGGCGAGGGTGATGGATGAAGCCGAACCGCACGTCGTCGTTCACTGCGCGGCGGAAAAGGCGCCC
GACAAGGTCGAGCAGGAGCCGGAGAGGGCCCGGGCGCTCAACGTGTCGGCCAGCACAAGCCTGGCCAGGCTGACG
GCCCGGCGGGGCATCCTGCTCATCTACATCTCGACCGACTACGTCTTCGCCGGGACGGTGGGCGAGGCCCCCTAC
GAGGCGGATGCGACGCCCAAGCCGAGCAACCTGTACGGGCAGCTGAAGCTAGCGGGCGAGCGGGCGGTGCTGGAC
GAGTTCGACCGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCATCAGCAGCAGGGCGGCGTG
GGGGTGGTGCTGCGCGTGCCGCTGCTGTACGGGCACGCGGAGACGCCGGGCGAGAGCGCCGTCAACACGCTGATG
GACTCGGTCTGGAAAGCCCAGACGGAGGGGGCGAGGATTAGGATGGATGATTGGGCGCGCCGGTATCCAACCAAC
ACGGAGGATGTAGGGCGCGTGTGTCGCGACGTGGCGGCCAAGTATGTGGACGCGGGCGCGACGCTGCAAGGGCTG
CCCCGGATCCTGCACTTCTCGAGCGAGGACCAGACGACCAAGTACGGCATCTGCCAGCGGTTCGGCGAGGTCATG
GGGCTGTCGACGGCGGGCATCGAGCCCAACCGGCAGGGCAACGAGGCGGGTGCGTCGTCGGCGCAGCGGCCGTAC
GACTGCCATCTCAGCACCAGGGGCCTCGTGGAGCTGGGCATTGACGTGTCAGCGTGCGACTTCACCGCCTGGTGG
CGGCGCGAGGTCGGTGCCTTTCGAAGATGA
Gene >Hirsu2|2402
ATGGCCCAACGAAACGCGCTCGTGACGGGTGCCACCGGTCTATTGGGCCGGGAGGTCGTCAAGGCCTTTCGGACG
GGCGGATGGAAGGTCAAAGGCACAGGTTATTCGCGGGCGGACGGCATCGACATCCTCAGGGCCGACCTTACCAAC
GAGAACGAGGTGGCGAGGGTGATGGATGAAGCCGAGTTGAGCGAGCCCTCCTCCCCCGTCCCAGACGAAAGCCGG
GGCTGCTCGCTGACCGAGACTGGGGACATCAAGACCGCACGTCGTCGTTCACTGTGAGTGGGAAGTCCCGGCAAC
GGCCGTCCGCCCGCTGCTCGCCGGACGACGGACGGCGGAGAGGAGGAGGAGGGAGGGGAATCGACAGCCGAACGG
GCCGCTGACACGGGACGCCTTCTGCCAGGCGCGGCGGAAAAGGCGCCCGACAAGGTCGAGCAGGAGCCGGAGAGG
GCCCGGGCGCTCAACGTGTCGGCCAGCACAAGCCTGGCCAGGCTGACGGCCCGGCGGGGCATCCTGCTCATCTAC
ATCTCGACCGACTACGTCTTCGCCGGGACGGTGGGCGAGGCCCCCTACGAGGCGGATGCGACGCCCAAGCCGAGC
AACCTGTACGGGCAGCTGAAGCTAGCGGGCGAGCGGGCGGTGCTGGACGAGTTCGACCGGCAGCAGCAGCAGCAG
CAGCAGCAACAGCAACAGCAACAGCAGCATCAGCAGCAGGGCGGCGTGGGGGTGGTGCTGCGCGTGCCGCTGCTG
TACGGGCACGCGGAGACGCCGGGCGAGAGCGCCGTCAACACGCTGATGGACTCGGTCTGGAAAGCCCAGACGGAG
GGGGCGAGGATTAGGATGGATGATTGGGCGCGCCGGTATCCAACCAACACGGAGGATGTAGGGCGCGTGTGTCGC
GGTATGTCTCACCGGAACGTCTTGGCTGGAGGCGGGCGAGTCGGTTCGCATTAGGCCACGGCGGCCGTTGCATCC
ATGGCGCTGACGCTTCAACACATGCATCGACGCACGGGCAAAAGACGTGGCGGCCAAGTATGTGGACGCGGGCGC
GACGCTGCAAGGGCTGCCCCGGATCCTGCACTTCTCGAGCGAGGACCAGACGACCAAGTACGGCATCTGCCAGCG
GTTCGGCGAGGTCATGGGGCTGTCGACGGCGGGCATCGAGCCCAACCGGCAGGGCAACGAGGCGGGTGCGTCGTC
GGCGCAGCGGCCGTACGACTGCCATCTCAGCACCAGGGGCCTCGTGGAGCTGGGCATTGACGTGTCAGCGTGCGA
CTTCACCGCCTGGTGGCGGCGCGAGGTCGGTGCCTTTCGAAGATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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