© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2400 |
| Gene name | |
| Location | Contig_1571:593..1271 |
| Strand | + |
| Gene length (bp) | 678 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5 | 0.7144 | 0.2246 | 0.073 | 0.1249 | 0.1353 | 0.1347 | 0.1457 | 0.1486 | 0.0304 |
| Orthofinder run ID | 4 |
| Orthogroup | 9055 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|2400 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2400 MDKPDGKARGRQEDTSEGLAAAAVATLVDVADADLGTDTLVSSPFSSSSSSSSSSLSWAAPQGLPGPSGCRRPCL AWAVLDSSNAAGACPWRGGEERGVGEVESRALVTTQAWRAGMRRRDGNMQLCTEGEVPGSDDQLAGRGQRNGGKG AVGRDRRRARKRREAPEEDLDREPGAGQRIKERKEKGKRKNRGGEGGRRKGESHVDLMTKAAELVAGGVSSPKYR * |
| Coding | >Hirsu2|2400 ATGGACAAGCCGGACGGAAAGGCTCGGGGGCGACAAGAGGATACTAGCGAGGGTTTGGCGGCAGCTGCAGTAGCA ACCCTTGTTGATGTGGCTGACGCGGATCTCGGGACCGACACTCTCGTCTCCTCGCCTTTCTCGTCGTCTTCCTCG TCGTCTTCCTCGTCGCTCTCCTGGGCTGCGCCTCAAGGCCTGCCCGGTCCGTCCGGCTGCCGTCGCCCTTGTCTC GCCTGGGCCGTCCTCGACTCGTCCAATGCGGCGGGAGCCTGCCCGTGGCGTGGCGGCGAGGAGAGAGGTGTGGGT GAAGTGGAAAGCCGGGCCCTGGTCACGACCCAAGCGTGGCGGGCCGGTATGCGTCGAAGGGATGGGAATATGCAG CTATGTACTGAAGGCGAGGTCCCCGGCAGCGATGACCAGCTCGCGGGGCGGGGGCAAAGGAATGGCGGCAAAGGG GCTGTAGGAAGAGACAGGAGACGGGCAAGGAAGAGAAGAGAGGCTCCTGAGGAGGATCTGGATCGAGAGCCCGGC GCGGGCCAGAGGATCAAAGAAAGAAAGGAAAAAGGAAAAAGGAAAAACAGGGGAGGCGAAGGAGGGAGACGAAAA GGGGAGAGCCACGTTGACTTGATGACTAAGGCGGCCGAGCTTGTCGCTGGGGGCGTGAGTTCCCCCAAGTACCGC TAG |
| Transcript | >Hirsu2|2400 ATGGACAAGCCGGACGGAAAGGCTCGGGGGCGACAAGAGGATACTAGCGAGGGTTTGGCGGCAGCTGCAGTAGCA ACCCTTGTTGATGTGGCTGACGCGGATCTCGGGACCGACACTCTCGTCTCCTCGCCTTTCTCGTCGTCTTCCTCG TCGTCTTCCTCGTCGCTCTCCTGGGCTGCGCCTCAAGGCCTGCCCGGTCCGTCCGGCTGCCGTCGCCCTTGTCTC GCCTGGGCCGTCCTCGACTCGTCCAATGCGGCGGGAGCCTGCCCGTGGCGTGGCGGCGAGGAGAGAGGTGTGGGT GAAGTGGAAAGCCGGGCCCTGGTCACGACCCAAGCGTGGCGGGCCGGTATGCGTCGAAGGGATGGGAATATGCAG CTATGTACTGAAGGCGAGGTCCCCGGCAGCGATGACCAGCTCGCGGGGCGGGGGCAAAGGAATGGCGGCAAAGGG GCTGTAGGAAGAGACAGGAGACGGGCAAGGAAGAGAAGAGAGGCTCCTGAGGAGGATCTGGATCGAGAGCCCGGC GCGGGCCAGAGGATCAAAGAAAGAAAGGAAAAAGGAAAAAGGAAAAACAGGGGAGGCGAAGGAGGGAGACGAAAA GGGGAGAGCCACGTTGACTTGATGACTAAGGCGGCCGAGCTTGTCGCTGGGGGCGTGAGTTCCCCCAAGTACCGC TAG |
| Gene | >Hirsu2|2400 ATGGACAAGCCGGACGGAAAGGCTCGGGGGCGACAAGAGGATACTAGCGAGGGTTTGGCGGCAGCTGCAGTAGCA ACCCTTGTTGATGTGGCTGACGCGGATCTCGGGACCGACACTCTCGTCTCCTCGCCTTTCTCGTCGTCTTCCTCG TCGTCTTCCTCGTCGCTCTCCTGGGCTGCGCCTCAAGGCCTGCCCGGTCCGTCCGGCTGCCGTCGCCCTTGTCTC GCCTGGGCCGTCCTCGACTCGTCCAATGCGGCGGGAGCCTGCCCGTGGCGTGGCGGCGAGGAGAGAGGTGTGGGT GAAGTGGAAAGCCGGGCCCTGGTCACGACCCAAGCGTGGCGGGCCGGTATGCGTCGAAGGGATGGGAATATGCAG CTATGTACTGAAGGCGAGGTCCCCGGCAGCGATGACCAGCTCGCGGGGCGGGGGCAAAGGAATGGCGGCAAAGGG GCTGTAGGAAGAGACAGGAGACGGGCAAGGAAGAGAAGAGAGGCTCCTGAGGAGGATCTGGATCGAGAGCCCGGC GCGGGCCAGAGGATCAAAGAAAGAAAGGAAAAAGGAAAAAGGAAAAACAGGGGAGGCGAAGGAGGGAGACGAAAA GGGGAGAGCCACGTTGACTTGATGACTAAGGCGGCCGAGCTTGTCGCTGGGGGCGTGAGTTCCCCCAAGTACCGC TAG |